ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet98f02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_507291.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0016N23.125 mRNA Length = 1424 Score = 232 bits (117), Expect = 8e-58 Identities = 240/281 (85%) Strand = Plus / Plus Query: 136 catgaaggcgtctatcaagttccgcgacgacgaccggccgctgatgcgggccaaggtgcc 195 |||||||||||| |||||||||||||||||||||||||||||| |||| |||| |||||| Sbjct: 145 catgaaggcgtcgatcaagttccgcgacgacgaccggccgctgctgcgtgccagggtgcc 204 Query: 196 gatcggcgtgctcgggctgccgttccagtccggtctctccgctggcggcgatccccggga 255 |||| | ||||||||||||||| |||| ||||| |||||||| |||||||| || || || Sbjct: 205 gatcagggtgctcgggctgccgctccactccggcctctccgccggcggcgacccgcgcga 264 Query: 256 gctccgcttcgatctctccaccgctctcgcctccgggccagctctccgcttatcgtatcg 315 ||||||| |||| ||||||||||| || ||| ||| || || ||||| | ||||| || Sbjct: 265 gctccgcctcgacctctccaccgccttctccttcggcccggcgatccgcctctcgtaccg 324 Query: 316 ccccaacgaccccggtctccccttcgccatctccatccgcgccggtgtcggagccctcgg 375 |||||| ||||||| ||||||||| || ||||| |||||||||| ||||| ||||||| Sbjct: 325 ccccaatgaccccgccctccccttctccgtctccgtccgcgccggcgtcgggcccctcgg 384 Query: 376 ctcccctgtctgcgcccccttctctctcgctgccgagttca 416 |||||| | | |||| |||||||| ||||| |||||||||| Sbjct: 385 ctcccccgcccgcgcgcccttctccctcgccgccgagttca 425
>ref|XM_483295.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1411 Score = 232 bits (117), Expect = 8e-58 Identities = 240/281 (85%) Strand = Plus / Plus Query: 136 catgaaggcgtctatcaagttccgcgacgacgaccggccgctgatgcgggccaaggtgcc 195 |||||||||||| |||||||||||||||||||||||||||||| |||| |||| |||||| Sbjct: 131 catgaaggcgtcgatcaagttccgcgacgacgaccggccgctgctgcgtgccagggtgcc 190 Query: 196 gatcggcgtgctcgggctgccgttccagtccggtctctccgctggcggcgatccccggga 255 |||| | ||||||||||||||| |||| ||||| |||||||| |||||||| || || || Sbjct: 191 gatcagggtgctcgggctgccgctccactccggcctctccgccggcggcgacccgcgcga 250 Query: 256 gctccgcttcgatctctccaccgctctcgcctccgggccagctctccgcttatcgtatcg 315 ||||||| |||| ||||||||||| || ||| ||| || || ||||| | ||||| || Sbjct: 251 gctccgcctcgacctctccaccgccttctccttcggcccggcgatccgcctctcgtaccg 310 Query: 316 ccccaacgaccccggtctccccttcgccatctccatccgcgccggtgtcggagccctcgg 375 |||||| ||||||| ||||||||| || ||||| |||||||||| ||||| ||||||| Sbjct: 311 ccccaatgaccccgccctccccttctccgtctccgtccgcgccggcgtcgggcccctcgg 370 Query: 376 ctcccctgtctgcgcccccttctctctcgctgccgagttca 416 |||||| | | |||| |||||||| ||||| |||||||||| Sbjct: 371 ctcccccgcccgcgcgcccttctccctcgccgccgagttca 411
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 232 bits (117), Expect = 8e-58 Identities = 240/281 (85%) Strand = Plus / Minus Query: 136 catgaaggcgtctatcaagttccgcgacgacgaccggccgctgatgcgggccaaggtgcc 195 |||||||||||| |||||||||||||||||||||||||||||| |||| |||| |||||| Sbjct: 25327048 catgaaggcgtcgatcaagttccgcgacgacgaccggccgctgctgcgtgccagggtgcc 25326989 Query: 196 gatcggcgtgctcgggctgccgttccagtccggtctctccgctggcggcgatccccggga 255 |||| | ||||||||||||||| |||| ||||| |||||||| |||||||| || || || Sbjct: 25326988 gatcagggtgctcgggctgccgctccactccggcctctccgccggcggcgacccgcgcga 25326929 Query: 256 gctccgcttcgatctctccaccgctctcgcctccgggccagctctccgcttatcgtatcg 315 ||||||| |||| ||||||||||| || ||| ||| || || ||||| | ||||| || Sbjct: 25326928 gctccgcctcgacctctccaccgccttctccttcggcccggcgatccgcctctcgtaccg 25326869 Query: 316 ccccaacgaccccggtctccccttcgccatctccatccgcgccggtgtcggagccctcgg 375 |||||| ||||||| ||||||||| || ||||| |||||||||| ||||| ||||||| Sbjct: 25326868 ccccaatgaccccgccctccccttctccgtctccgtccgcgccggcgtcgggcccctcgg 25326809 Query: 376 ctcccctgtctgcgcccccttctctctcgctgccgagttca 416 |||||| | | |||| |||||||| ||||| |||||||||| Sbjct: 25326808 ctcccccgcccgcgcgcccttctccctcgccgccgagttca 25326768
>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23 Length = 147336 Score = 232 bits (117), Expect = 8e-58 Identities = 240/281 (85%) Strand = Plus / Minus Query: 136 catgaaggcgtctatcaagttccgcgacgacgaccggccgctgatgcgggccaaggtgcc 195 |||||||||||| |||||||||||||||||||||||||||||| |||| |||| |||||| Sbjct: 102233 catgaaggcgtcgatcaagttccgcgacgacgaccggccgctgctgcgtgccagggtgcc 102174 Query: 196 gatcggcgtgctcgggctgccgttccagtccggtctctccgctggcggcgatccccggga 255 |||| | ||||||||||||||| |||| ||||| |||||||| |||||||| || || || Sbjct: 102173 gatcagggtgctcgggctgccgctccactccggcctctccgccggcggcgacccgcgcga 102114 Query: 256 gctccgcttcgatctctccaccgctctcgcctccgggccagctctccgcttatcgtatcg 315 ||||||| |||| ||||||||||| || ||| ||| || || ||||| | ||||| || Sbjct: 102113 gctccgcctcgacctctccaccgccttctccttcggcccggcgatccgcctctcgtaccg 102054 Query: 316 ccccaacgaccccggtctccccttcgccatctccatccgcgccggtgtcggagccctcgg 375 |||||| ||||||| ||||||||| || ||||| |||||||||| ||||| ||||||| Sbjct: 102053 ccccaatgaccccgccctccccttctccgtctccgtccgcgccggcgtcgggcccctcgg 101994 Query: 376 ctcccctgtctgcgcccccttctctctcgctgccgagttca 416 |||||| | | |||| |||||||| ||||| |||||||||| Sbjct: 101993 ctcccccgcccgcgcgcccttctccctcgccgccgagttca 101953
>dbj|AK106031.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-D03, full insert sequence Length = 1411 Score = 232 bits (117), Expect = 8e-58 Identities = 240/281 (85%) Strand = Plus / Plus Query: 136 catgaaggcgtctatcaagttccgcgacgacgaccggccgctgatgcgggccaaggtgcc 195 |||||||||||| |||||||||||||||||||||||||||||| |||| |||| |||||| Sbjct: 131 catgaaggcgtcgatcaagttccgcgacgacgaccggccgctgctgcgtgccagggtgcc 190 Query: 196 gatcggcgtgctcgggctgccgttccagtccggtctctccgctggcggcgatccccggga 255 |||| | ||||||||||||||| |||| ||||| |||||||| |||||||| || || || Sbjct: 191 gatcagggtgctcgggctgccgctccactccggcctctccgccggcggcgacccgcgcga 250 Query: 256 gctccgcttcgatctctccaccgctctcgcctccgggccagctctccgcttatcgtatcg 315 ||||||| |||| ||||||||||| || ||| ||| || || ||||| | ||||| || Sbjct: 251 gctccgcctcgacctctccaccgccttctccttcggcccggcgatccgcctctcgtaccg 310 Query: 316 ccccaacgaccccggtctccccttcgccatctccatccgcgccggtgtcggagccctcgg 375 |||||| ||||||| ||||||||| || ||||| |||||||||| ||||| ||||||| Sbjct: 311 ccccaatgaccccgccctccccttctccgtctccgtccgcgccggcgtcgggcccctcgg 370 Query: 376 ctcccctgtctgcgcccccttctctctcgctgccgagttca 416 |||||| | | |||| |||||||| ||||| |||||||||| Sbjct: 371 ctcccccgcccgcgcgcccttctccctcgccgccgagttca 411
>dbj|AK072063.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110D22, full insert sequence Length = 1424 Score = 232 bits (117), Expect = 8e-58 Identities = 240/281 (85%) Strand = Plus / Plus Query: 136 catgaaggcgtctatcaagttccgcgacgacgaccggccgctgatgcgggccaaggtgcc 195 |||||||||||| |||||||||||||||||||||||||||||| |||| |||| |||||| Sbjct: 145 catgaaggcgtcgatcaagttccgcgacgacgaccggccgctgctgcgtgccagggtgcc 204 Query: 196 gatcggcgtgctcgggctgccgttccagtccggtctctccgctggcggcgatccccggga 255 |||| | ||||||||||||||| |||| ||||| |||||||| |||||||| || || || Sbjct: 205 gatcagggtgctcgggctgccgctccactccggcctctccgccggcggcgacccgcgcga 264 Query: 256 gctccgcttcgatctctccaccgctctcgcctccgggccagctctccgcttatcgtatcg 315 ||||||| |||| ||||||||||| || ||| ||| || || ||||| | ||||| || Sbjct: 265 gctccgcctcgacctctccaccgccttctccttcggcccggcgatccgcctctcgtaccg 324 Query: 316 ccccaacgaccccggtctccccttcgccatctccatccgcgccggtgtcggagccctcgg 375 |||||| ||||||| ||||||||| || ||||| |||||||||| ||||| ||||||| Sbjct: 325 ccccaatgaccccgccctccccttctccgtctccgtccgcgccggcgtcgggcccctcgg 384 Query: 376 ctcccctgtctgcgcccccttctctctcgctgccgagttca 416 |||||| | | |||| |||||||| ||||| |||||||||| Sbjct: 385 ctcccccgcccgcgcgcccttctccctcgccgccgagttca 425
>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBb0052C07, complete sequence Length = 154528 Score = 117 bits (59), Expect = 3e-23 Identities = 80/87 (91%) Strand = Plus / Plus Query: 135 ccatgaaggcgtctatcaagttccgcgacgacgaccggccgctgatgcgggccaaggtgc 194 ||||||||||||| ||||||||||| |||||||||||||||||| |||| |||||||||| Sbjct: 81291 ccatgaaggcgtcgatcaagttccgggacgacgaccggccgctggtgcgcgccaaggtgc 81350 Query: 195 cgatcggcgtgctcgggctgccgttcc 221 | ||||||| |||||||||||||||| Sbjct: 81351 ccgtcggcgtcctcgggctgccgttcc 81377 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 251 cgggagctccgcttcgatctctccaccgctctcgcctccgggccagctctccgcttatcg 310 ||||| ||||||||||| ||||||||||| |||||||||| || || |||||| | ||| Sbjct: 81413 cgggatctccgcttcgacctctccaccgccttcgcctccggcccggcgctccgcctctcg 81472 Query: 311 tatcgccccaacgaccc 327 || |||||||||||||| Sbjct: 81473 taccgccccaacgaccc 81489
>dbj|AK064834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F19, full insert sequence Length = 1601 Score = 117 bits (59), Expect = 3e-23 Identities = 80/87 (91%) Strand = Plus / Plus Query: 135 ccatgaaggcgtctatcaagttccgcgacgacgaccggccgctgatgcgggccaaggtgc 194 ||||||||||||| ||||||||||| |||||||||||||||||| |||| |||||||||| Sbjct: 60 ccatgaaggcgtcgatcaagttccgggacgacgaccggccgctggtgcgcgccaaggtgc 119 Query: 195 cgatcggcgtgctcgggctgccgttcc 221 | ||||||| |||||||||||||||| Sbjct: 120 ccgtcggcgtcctcgggctgccgttcc 146 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 251 cgggagctccgcttcgatctctccaccgctctcgcctccgggccagctctccgcttatcg 310 ||||| ||||||||||| ||||||||||| |||||||||| || || |||||| | ||| Sbjct: 182 cgggatctccgcttcgacctctccaccgccttcgcctccggcccggcgctccgcctctcg 241 Query: 311 tatcgccccaacgaccc 327 || |||||||||||||| Sbjct: 242 taccgccccaacgaccc 258
>dbj|AK062257.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G09, full insert sequence Length = 1508 Score = 117 bits (59), Expect = 3e-23 Identities = 80/87 (91%) Strand = Plus / Plus Query: 135 ccatgaaggcgtctatcaagttccgcgacgacgaccggccgctgatgcgggccaaggtgc 194 ||||||||||||| ||||||||||| |||||||||||||||||| |||| |||||||||| Sbjct: 116 ccatgaaggcgtcgatcaagttccgggacgacgaccggccgctggtgcgcgccaaggtgc 175 Query: 195 cgatcggcgtgctcgggctgccgttcc 221 | ||||||| |||||||||||||||| Sbjct: 176 ccgtcggcgtcctcgggctgccgttcc 202 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 251 cgggagctccgcttcgatctctccaccgctctcgcctccgggccagctctccgcttatcg 310 ||||| ||||||||||| ||||||||||| |||||||||| || || |||||| | ||| Sbjct: 238 cgggatctccgcttcgacctctccaccgccttcgcctccggcccggcgctccgcctctcg 297 Query: 311 tatcgccccaacgaccc 327 || |||||||||||||| Sbjct: 298 taccgccccaacgaccc 314
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Minus Query: 28 atctcgccggcgcgcaggcggcg 50 ||||||||||||||||||||||| Sbjct: 4355263 atctcgccggcgcgcaggcggcg 4355241 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 cgccggcgcgcaggcggcgccgtc 55 |||||||||||||||| ||||||| Sbjct: 5177546 cgccggcgcgcaggcgacgccgtc 5177569
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 190 ggtgccgatcggcgtgctcgggctgc 215 ||||||| |||||||||||||||||| Sbjct: 4961177 ggtgccggtcggcgtgctcgggctgc 4961202 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 190 ggtgccgatcggcgtgctcgggctgc 215 ||||||| |||||||||||||||||| Sbjct: 4023089 ggtgccggtcggcgtgctcgggctgc 4023114
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.37 Identities = 73/90 (81%), Gaps = 5/90 (5%) Strand = Plus / Plus Query: 332 ctccccttcgccatctccatccgcgccggtgtcggagccctcggctcccctgtctgcgcc 391 ||||| ||| |||||||| |||||| | |||||| |||||||||||| || ||||||| Sbjct: 3890841 ctcccattctccatctccgtccgcgtcaatgtcgggcccctcggctcccatgcctgcgcc 3890900 Query: 392 -----cccttctctctcgctgccgagttca 416 |||||||||||| | |||||||||| Sbjct: 3890901 gcacgcccttctctctcaccgccgagttca 3890930
>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013F10 Length = 163095 Score = 44.1 bits (22), Expect = 0.37 Identities = 73/90 (81%), Gaps = 5/90 (5%) Strand = Plus / Plus Query: 332 ctccccttcgccatctccatccgcgccggtgtcggagccctcggctcccctgtctgcgcc 391 ||||| ||| |||||||| |||||| | |||||| |||||||||||| || ||||||| Sbjct: 12745 ctcccattctccatctccgtccgcgtcaatgtcgggcccctcggctcccatgcctgcgcc 12804 Query: 392 -----cccttctctctcgctgccgagttca 416 |||||||||||| | |||||||||| Sbjct: 12805 gcacgcccttctctctcaccgccgagttca 12834
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 182 cgggccaaggtgccgatcggc 202 ||||||||||||||||||||| Sbjct: 3353967 cgggccaaggtgccgatcggc 3353987 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 tcgccggcgcgcaggcggcgc 51 ||||||||||||||||||||| Sbjct: 407441 tcgccggcgcgcaggcggcgc 407461
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 tcgccggcgcgcaggcggcgc 51 ||||||||||||||||||||| Sbjct: 71341 tcgccggcgcgcaggcggcgc 71321
>gb|BC024452.1| Mus musculus arylformamidase, mRNA (cDNA clone IMAGE:4975033), partial cds Length = 1638 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 tctccccttcgccatctccat 351 ||||||||||||||||||||| Sbjct: 219 tctccccttcgccatctccat 199
>gb|BC043309.1| Mus musculus arylformamidase, mRNA (cDNA clone IMAGE:5051986), partial cds Length = 2311 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 tctccccttcgccatctccat 351 ||||||||||||||||||||| Sbjct: 214 tctccccttcgccatctccat 194
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 gccggcgcgcaggcggcgccg 53 ||||||||||||||||||||| Sbjct: 69866 gccggcgcgcaggcggcgccg 69886
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 tcgccggcgcgcaggcggcgc 51 ||||||||||||||||||||| Sbjct: 1466903 tcgccggcgcgcaggcggcgc 1466883
>gb|BC066780.1| Mus musculus arylformamidase, mRNA (cDNA clone MGC:74090 IMAGE:30301832), complete cds Length = 1456 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 tctccccttcgccatctccat 351 ||||||||||||||||||||| Sbjct: 227 tctccccttcgccatctccat 207
>gb|AF399717.1| Mus musculus kynurenine formamidase mRNA, complete cds Length = 1468 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 tctccccttcgccatctccat 351 ||||||||||||||||||||| Sbjct: 243 tctccccttcgccatctccat 223
>gb|AC051634.6| Oryza sativa chromosome 10 BAC OSJNBb0018B10 genomic sequence, complete sequence Length = 135789 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 gccggcgcgcaggcggcgccg 53 ||||||||||||||||||||| Sbjct: 49068 gccggcgcgcaggcggcgccg 49048
>dbj|AK018563.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched library, clone:9030621K19 product:hypothetical alpha/beta-Hydrolases structure containing protein, full insert sequence Length = 1571 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 tctccccttcgccatctccat 351 ||||||||||||||||||||| Sbjct: 184 tctccccttcgccatctccat 164
>dbj|AK004030.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110032G03 product:synaptogyrin 2, full insert sequence Length = 1778 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 tctccccttcgccatctccat 351 ||||||||||||||||||||| Sbjct: 204 tctccccttcgccatctccat 184
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 gccggcgcgcaggcggcgccg 53 ||||||||||||||||||||| Sbjct: 19591877 gccggcgcgcaggcggcgccg 19591857
>gb|AC007502.6| Homo sapiens chromosome 16 clone RP11-98C8, complete sequence Length = 158696 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 tgccgagttcacctcctgccc 426 ||||||||||||||||||||| Sbjct: 108958 tgccgagttcacctcctgccc 108938
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 tcgccggcgcgcaggcggcgc 51 ||||||||||||||||||||| Sbjct: 2770533 tcgccggcgcgcaggcggcgc 2770513 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 ctcgccggcgcgcaggcggc 49 |||||||||||||||||||| Sbjct: 2521254 ctcgccggcgcgcaggcggc 2521235
>gb|AY099479.1| Mus musculus kynenurine formamidase mRNA, complete cds Length = 2332 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 tctccccttcgccatctccat 351 ||||||||||||||||||||| Sbjct: 243 tctccccttcgccatctccat 223
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 cggcgcgcaggcggcgccgtc 55 ||||||||||||||||||||| Sbjct: 2671484 cggcgcgcaggcggcgccgtc 2671504
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 ccggtctctccgctggcggcg 245 ||||||||||||||||||||| Sbjct: 3133003 ccggtctctccgctggcggcg 3133023
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 gccggcgcgcaggcggcgccg 53 ||||||||||||||||||||| Sbjct: 19603153 gccggcgcgcaggcggcgccg 19603133
>ref|NM_027827.2| Mus musculus arylformamidase (Afmid), mRNA Length = 2332 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 tctccccttcgccatctccat 351 ||||||||||||||||||||| Sbjct: 243 tctccccttcgccatctccat 223
>emb|AL591433.6| Mouse DNA sequence from clone RP23-268N22 on chromosome 11, complete sequence Length = 203336 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 tctccccttcgccatctccat 351 ||||||||||||||||||||| Sbjct: 8756 tctccccttcgccatctccat 8736
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 gttccgcgacgacgaccggc 173 |||||||||||||||||||| Sbjct: 2636682 gttccgcgacgacgaccggc 2636663
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 ctcgccggcgcgcaggcggc 49 |||||||||||||||||||| Sbjct: 1042493 ctcgccggcgcgcaggcggc 1042512
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16 Length = 343473 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 cgccggcgcgcaggcggcgc 51 |||||||||||||||||||| Sbjct: 253815 cgccggcgcgcaggcggcgc 253796
>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14 Length = 255260 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 cgccggcgcgcaggcggcgc 51 |||||||||||||||||||| Sbjct: 44853 cgccggcgcgcaggcggcgc 44834
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 gcgcgcaggcggcgccgtcc 56 |||||||||||||||||||| Sbjct: 31871 gcgcgcaggcggcgccgtcc 31852
>emb|AL606625.3|OSJN00039 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032I19, complete sequence Length = 145383 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 tctctctcgctgccgagttc 415 |||||||||||||||||||| Sbjct: 65272 tctctctcgctgccgagttc 65291
>gb|BC097700.1| Xenopus laevis cDNA clone MGC:115247 IMAGE:6638458, complete cds Length = 2648 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 ctcccctgtctgcgccccct 395 |||||||||||||||||||| Sbjct: 201 ctcccctgtctgcgccccct 182
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 tctctctcgctgccgagttc 415 |||||||||||||||||||| Sbjct: 15981059 tctctctcgctgccgagttc 15981078
>gb|AF104994.1|AF104994 Streptomyces coelicolor A3(2) periplasmic binding protein (atrA), permease (AtrB), ATP-binding protein (atrC), methyltransferase (metZ), signal peptidase, Ni-containing superoxide dismutase (sodN), puromycin N-acetyltransferase (pat), and geranyl transferase (gtr) genes, complete cds; and unknown genes Length = 8568 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 gcgcgcaggcggcgccgtcc 56 |||||||||||||||||||| Sbjct: 6829 gcgcgcaggcggcgccgtcc 6848
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 gttccgcgacgacgaccggc 173 |||||||||||||||||||| Sbjct: 5569669 gttccgcgacgacgaccggc 5569650
>emb|AL627350.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0302E05, complete sequence Length = 61795 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tgcgcccccttctctctcgc 405 |||||||||||||||||||| Sbjct: 38382 tgcgcccccttctctctcgc 38363
>gb|DQ328766.1| Ergasilus anchoratus strain EAH 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 981 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 gtcggagccctcggctcccc 381 |||||||||||||||||||| Sbjct: 234 gtcggagccctcggctcccc 253
>gb|AC167966.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940126D9, complete sequence Length = 125236 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 tcgccatctccatccgcgcc 358 |||||||||||||||||||| Sbjct: 32818 tcgccatctccatccgcgcc 32837 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,314,150 Number of Sequences: 3902068 Number of extensions: 2314150 Number of successful extensions: 44413 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42843 Number of HSP's gapped (non-prelim): 1562 length of query: 435 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 413 effective length of database: 17,147,199,772 effective search space: 7081793505836 effective search space used: 7081793505836 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
