ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet98e11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB204556.1| Triticum aestivum Xip-III gene for xylanase inhibitor XIP-III, complete cds Length = 934 Score = 107 bits (54), Expect = 2e-20 Identities = 102/118 (86%) Strand = Plus / Plus Query: 122 cggggaagacaggccaggtggccgtgttctggggtaggaacaagaacgaggggtccctcc 181 |||||||||| ||||||||| | ||||||||||| |||||||| |||||||||||| | Sbjct: 109 cggggaagaccggccaggtgacggtgttctggggccggaacaaggccgaggggtccctgc 168 Query: 182 gcgaggcctgcgacactggcacgtacaccatagccatcatttccttcctcgacgtctt 239 |||||||||||||| | |||| ||||||||| | || ||| || |||||||||||||| Sbjct: 169 gcgaggcctgcgactccggcatgtacaccatggtcaccatgtctttcctcgacgtctt 226
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 97.6 bits (49), Expect = 2e-17 Identities = 118/141 (83%) Strand = Plus / Minus Query: 96 cttccttgccgtcccggccgcggccacggggaagacaggccaggtggccgtgttctgggg 155 |||||| |||| ||||||| ||||| ||||||||| ||||||||| |||| |||||||| Sbjct: 14490784 cttcctcgccggcccggccacggccgtggggaagaccggccaggtgaccgtcttctgggg 14490725 Query: 156 taggaacaagaacgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagc 215 |||||||| ||||||| |||||||||||||||||||| | || |||||||| | Sbjct: 14490724 ccggaacaaggacgagggcaccctccgcgaggcctgcgactccgggctctacaccatggt 14490665 Query: 216 catcatttccttcctcgacgt 236 |||||| ||||||||| |||| Sbjct: 14490664 catcatgtccttcctcaacgt 14490644
>dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021M10 Length = 163416 Score = 97.6 bits (49), Expect = 2e-17 Identities = 118/141 (83%) Strand = Plus / Minus Query: 96 cttccttgccgtcccggccgcggccacggggaagacaggccaggtggccgtgttctgggg 155 |||||| |||| ||||||| ||||| ||||||||| ||||||||| |||| |||||||| Sbjct: 83958 cttcctcgccggcccggccacggccgtggggaagaccggccaggtgaccgtcttctgggg 83899 Query: 156 taggaacaagaacgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagc 215 |||||||| ||||||| |||||||||||||||||||| | || |||||||| | Sbjct: 83898 ccggaacaaggacgagggcaccctccgcgaggcctgcgactccgggctctacaccatggt 83839 Query: 216 catcatttccttcctcgacgt 236 |||||| ||||||||| |||| Sbjct: 83838 catcatgtccttcctcaacgt 83818
>emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inhibitor protein I (xipI gene) Length = 915 Score = 81.8 bits (41), Expect = 1e-12 Identities = 98/117 (83%) Strand = Plus / Plus Query: 127 aagacaggccaggtggccgtgttctggggtaggaacaagaacgaggggtccctccgcgag 186 ||||| ||||||||| | ||||||||||| |||||||| |||||| ||||| || ||| Sbjct: 100 aagaccggccaggtgacggtgttctggggacggaacaaggccgagggctccctgcgtgag 159 Query: 187 gcctgcgacactggcacgtacaccatagccatcatttccttcctcgacgtcttcggc 243 ||||||||| | || | ||||||||| | || ||| ||||| ||||||||||||||| Sbjct: 160 gcctgcgactccggtatgtacaccatggtcaccatgtccttgctcgacgtcttcggc 216
>ref|NM_193094.1| Oryza sativa (japonica cultivar-group), mRNA Length = 951 Score = 79.8 bits (40), Expect = 4e-12 Identities = 91/108 (84%) Strand = Plus / Plus Query: 136 caggtggccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgac 195 |||||| | ||||||||||| |||||||| |||||||||| ||||| ||||| |||||| Sbjct: 115 caggtgacggtgttctggggccggaacaaggacgaggggtctctccgggaggcgtgcgac 174 Query: 196 actggcacgtacaccatagccatcatttccttcctcgacgtcttcggc 243 || ||| ||||||||| | | |||| ||||||||| |||||| |||| Sbjct: 175 accggcttgtacaccatggtcgtcatgtccttcctcaacgtctacggc 222
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 79.8 bits (40), Expect = 4e-12 Identities = 91/108 (84%) Strand = Plus / Plus Query: 136 caggtggccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgac 195 |||||| | ||||||||||| |||||||| |||||||||| ||||| ||||| |||||| Sbjct: 26161676 caggtgacggtgttctggggccggaacaaggacgaggggtctctccgggaggcgtgcgac 26161735 Query: 196 actggcacgtacaccatagccatcatttccttcctcgacgtcttcggc 243 || ||| ||||||||| | | |||| ||||||||| |||||| |||| Sbjct: 26161736 accggcttgtacaccatggtcgtcatgtccttcctcaacgtctacggc 26161783
>dbj|AK111717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022A01, full insert sequence Length = 1165 Score = 79.8 bits (40), Expect = 4e-12 Identities = 91/108 (84%) Strand = Plus / Plus Query: 136 caggtggccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgac 195 |||||| | ||||||||||| |||||||| |||||||||| ||||| ||||| |||||| Sbjct: 163 caggtgacggtgttctggggccggaacaaggacgaggggtctctccgggaggcgtgcgac 222 Query: 196 actggcacgtacaccatagccatcatttccttcctcgacgtcttcggc 243 || ||| ||||||||| | | |||| ||||||||| |||||| |||| Sbjct: 223 accggcttgtacaccatggtcgtcatgtccttcctcaacgtctacggc 270
>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0519E12 Length = 152448 Score = 79.8 bits (40), Expect = 4e-12 Identities = 91/108 (84%) Strand = Plus / Plus Query: 136 caggtggccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgac 195 |||||| | ||||||||||| |||||||| |||||||||| ||||| ||||| |||||| Sbjct: 53534 caggtgacggtgttctggggccggaacaaggacgaggggtctctccgggaggcgtgcgac 53593 Query: 196 actggcacgtacaccatagccatcatttccttcctcgacgtcttcggc 243 || ||| ||||||||| | | |||| ||||||||| |||||| |||| Sbjct: 53594 accggcttgtacaccatggtcgtcatgtccttcctcaacgtctacggc 53641
>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence Length = 179668 Score = 75.8 bits (38), Expect = 6e-11 Identities = 89/106 (83%) Strand = Plus / Plus Query: 144 cgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcac 203 |||||||||||| |||||||| ||||||| || ||||| |||||||||||||| ||| Sbjct: 60783 cgtgttctggggccggaacaaggacgagggctctctccgtgaggcctgcgacaccggcct 60842 Query: 204 gtacaccatagccatcatttccttcctcgacgtcttcggccgcggc 249 |||||| | |||||| |||||||||| ||||||||||| |||| Sbjct: 60843 ctacacctccgtcatcatctccttcctcgccgtcttcggccacggc 60888 Score = 69.9 bits (35), Expect = 4e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 143 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggca 202 |||| |||||||| |||||||| ||||||| || ||||| |||||||||||||| |||| Sbjct: 84412 ccgtcttctggggccggaacaaggacgagggctctctccgggaggcctgcgacaccggca 84353 Query: 203 cgtacaccatagccatcatttccttcctcgacgtcttcggccgcggc 249 |||| || | |||||| ||||||||| ||||||||||| |||| Sbjct: 84352 tctacaacaccgtcatcatctccttcctcaccgtcttcggccacggc 84306 Score = 46.1 bits (23), Expect = 0.055 Identities = 68/83 (81%) Strand = Plus / Plus Query: 167 acgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcct 226 ||||||| ||||||| |||||||||||||| ||| |||| || | |||||| |||| Sbjct: 63631 acgagggcaccctccgtgaggcctgcgacaccggccactacaacaccgtcatcatctcct 63690 Query: 227 tcctcgacgtcttcggccgcggc 249 ||||| ||||||||||| |||| Sbjct: 63691 tcctcagcgtcttcggccacggc 63713
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 75.8 bits (38), Expect = 6e-11 Identities = 89/106 (83%) Strand = Plus / Plus Query: 144 cgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcac 203 |||||||||||| |||||||| ||||||| || ||||| |||||||||||||| ||| Sbjct: 28101516 cgtgttctggggccggaacaaggacgagggctctctccgtgaggcctgcgacaccggcct 28101575 Query: 204 gtacaccatagccatcatttccttcctcgacgtcttcggccgcggc 249 |||||| | |||||| |||||||||| ||||||||||| |||| Sbjct: 28101576 ctacacctccgtcatcatctccttcctcgccgtcttcggccacggc 28101621 Score = 69.9 bits (35), Expect = 4e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 143 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggca 202 |||| |||||||| |||||||| ||||||| || ||||| |||||||||||||| |||| Sbjct: 28125857 ccgtcttctggggccggaacaaggacgagggctctctccgggaggcctgcgacaccggca 28125798 Query: 203 cgtacaccatagccatcatttccttcctcgacgtcttcggccgcggc 249 |||| || | |||||| ||||||||| ||||||||||| |||| Sbjct: 28125797 tctacaacaccgtcatcatctccttcctcaccgtcttcggccacggc 28125751 Score = 46.1 bits (23), Expect = 0.055 Identities = 68/83 (81%) Strand = Plus / Plus Query: 167 acgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcct 226 ||||||| ||||||| |||||||||||||| ||| |||| || | |||||| |||| Sbjct: 28105076 acgagggcaccctccgtgaggcctgcgacaccggccactacaacaccgtcatcatctcct 28105135 Query: 227 tcctcgacgtcttcggccgcggc 249 ||||| ||||||||||| |||| Sbjct: 28105136 tcctcagcgtcttcggccacggc 28105158 Score = 46.1 bits (23), Expect = 0.055 Identities = 68/83 (81%) Strand = Plus / Plus Query: 167 acgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcct 226 ||||||| ||||||| |||||||||||||| ||| |||| || | |||||| |||| Sbjct: 28104364 acgagggcaccctccgtgaggcctgcgacaccggccactacaacaccgtcatcatctcct 28104423 Query: 227 tcctcgacgtcttcggccgcggc 249 ||||| ||||||||||| |||| Sbjct: 28104424 tcctcagcgtcttcggccacggc 28104446
>dbj|AK073800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067D20, full insert sequence Length = 1106 Score = 75.8 bits (38), Expect = 6e-11 Identities = 89/106 (83%) Strand = Plus / Plus Query: 144 cgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcac 203 |||||||||||| |||||||| ||||||| || ||||| |||||||||||||| ||| Sbjct: 192 cgtgttctggggccggaacaaggacgagggctctctccgtgaggcctgcgacaccggcct 251 Query: 204 gtacaccatagccatcatttccttcctcgacgtcttcggccgcggc 249 |||||| | |||||| |||||||||| ||||||||||| |||| Sbjct: 252 ctacacctccgtcatcatctccttcctcgccgtcttcggccacggc 297
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 75.8 bits (38), Expect = 6e-11 Identities = 89/106 (83%) Strand = Plus / Plus Query: 144 cgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcac 203 |||||||||||| |||||||| ||||||| || ||||| |||||||||||||| ||| Sbjct: 28086394 cgtgttctggggccggaacaaggacgagggctctctccgtgaggcctgcgacaccggcct 28086453 Query: 204 gtacaccatagccatcatttccttcctcgacgtcttcggccgcggc 249 |||||| | |||||| |||||||||| ||||||||||| |||| Sbjct: 28086454 ctacacctccgtcatcatctccttcctcgccgtcttcggccacggc 28086499 Score = 69.9 bits (35), Expect = 4e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 143 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggca 202 |||| |||||||| |||||||| ||||||| || ||||| |||||||||||||| |||| Sbjct: 28110735 ccgtcttctggggccggaacaaggacgagggctctctccgggaggcctgcgacaccggca 28110676 Query: 203 cgtacaccatagccatcatttccttcctcgacgtcttcggccgcggc 249 |||| || | |||||| ||||||||| ||||||||||| |||| Sbjct: 28110675 tctacaacaccgtcatcatctccttcctcaccgtcttcggccacggc 28110629 Score = 46.1 bits (23), Expect = 0.055 Identities = 68/83 (81%) Strand = Plus / Plus Query: 167 acgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcct 226 ||||||| ||||||| |||||||||||||| ||| |||| || | |||||| |||| Sbjct: 28089954 acgagggcaccctccgtgaggcctgcgacaccggccactacaacaccgtcatcatctcct 28090013 Query: 227 tcctcgacgtcttcggccgcggc 249 ||||| ||||||||||| |||| Sbjct: 28090014 tcctcagcgtcttcggccacggc 28090036 Score = 46.1 bits (23), Expect = 0.055 Identities = 68/83 (81%) Strand = Plus / Plus Query: 167 acgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcct 226 ||||||| ||||||| |||||||||||||| ||| |||| || | |||||| |||| Sbjct: 28089242 acgagggcaccctccgtgaggcctgcgacaccggccactacaacaccgtcatcatctcct 28089301 Query: 227 tcctcgacgtcttcggccgcggc 249 ||||| ||||||||||| |||| Sbjct: 28089302 tcctcagcgtcttcggccacggc 28089324
>dbj|D55708.1| Oryza sativa (japonica cultivar-group) mRNA for chitinase, complete cds Length = 1049 Score = 75.8 bits (38), Expect = 6e-11 Identities = 89/106 (83%) Strand = Plus / Plus Query: 144 cgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcac 203 |||||||||||| |||||||| ||||||| || ||||| |||||||||||||| ||| Sbjct: 134 cgtgttctggggccggaacaaggacgagggctctctccgtgaggcctgcgacaccggcct 193 Query: 204 gtacaccatagccatcatttccttcctcgacgtcttcggccgcggc 249 |||||| | |||||| |||||||||| ||||||||||| |||| Sbjct: 194 ctacacctccgtcatcatctccttcctcgccgtcttcggccacggc 239
>dbj|AK106678.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-A12, full insert sequence Length = 938 Score = 69.9 bits (35), Expect = 4e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 143 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggca 202 |||| |||||||| |||||||| ||||||| || ||||| |||||||||||||| |||| Sbjct: 746 ccgtcttctggggccggaacaaggacgagggctctctccgggaggcctgcgacaccggca 687 Query: 203 cgtacaccatagccatcatttccttcctcgacgtcttcggccgcggc 249 |||| || | |||||| ||||||||| ||||||||||| |||| Sbjct: 686 tctacaacaccgtcatcatctccttcctcaccgtcttcggccacggc 640
>dbj|AK064281.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-G04, full insert sequence Length = 1161 Score = 69.9 bits (35), Expect = 4e-09 Identities = 89/107 (83%) Strand = Plus / Plus Query: 143 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggca 202 |||| |||||||| |||||||| ||||||| || ||||| |||||||||||||| |||| Sbjct: 191 ccgtcttctggggccggaacaaggacgagggctctctccgggaggcctgcgacaccggca 250 Query: 203 cgtacaccatagccatcatttccttcctcgacgtcttcggccgcggc 249 |||| || | |||||| ||||||||| ||||||||||| |||| Sbjct: 251 tctacaacaccgtcatcatctccttcctcaccgtcttcggccacggc 297
>gb|AC104270.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1037_G10, complete sequence Length = 181130 Score = 58.0 bits (29), Expect = 1e-05 Identities = 86/105 (81%) Strand = Plus / Plus Query: 145 gtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcacg 204 ||||||||||| |||||||| |||||| |||||||| |||||||||||||| ||| Sbjct: 59973 gtgttctggggccggaacaaggccgagggctccctccgtgaggcctgcgacaccggcctc 60032 Query: 205 tacaccatagccatcatttccttcctcgacgtcttcggccgcggc 249 |||| || | |||||| ||||||||| || |||||||||||| Sbjct: 60033 tacaacaccgtcatcatctccttcctcagcgcgttcggccgcggc 60077 Score = 52.0 bits (26), Expect = 9e-04 Identities = 62/74 (83%) Strand = Plus / Plus Query: 158 ggaacaagaacgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagcca 217 |||||||| ||||||| |||||| | ||||||||||| || ||| ||||||| | || Sbjct: 93527 ggaacaaggacgagggctccctcagggaggcctgcgataccggcctctacaccaccgtca 93586 Query: 218 tcatttccttcctc 231 |||||||||||||| Sbjct: 93587 tcatttccttcctc 93600 Score = 48.1 bits (24), Expect = 0.014 Identities = 54/64 (84%) Strand = Plus / Minus Query: 168 cgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcctt 227 ||||||||||||||| ||||| |||||||| ||| ||||||| | |||||| ||||| Sbjct: 15167 cgaggggtccctccgtgaggcgtgcgacaccggcctctacaccaccgtcatcatctcctt 15108 Query: 228 cctc 231 |||| Sbjct: 15107 cctc 15104 Score = 46.1 bits (23), Expect = 0.055 Identities = 41/47 (87%) Strand = Plus / Plus Query: 149 tctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgac 195 ||||||| |||||||| ||||||| |||||| | |||||||||||| Sbjct: 71134 tctggggccggaacaaggacgagggctccctcagggaggcctgcgac 71180
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 58.0 bits (29), Expect = 1e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 145 gtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacac 197 ||||||||||| |||||||| |||||| |||||||| |||||||||||||| Sbjct: 8848048 gtgttctggggccggaacaaggccgagggctccctccgtgaggcctgcgacac 8848100 Score = 52.0 bits (26), Expect = 9e-04 Identities = 62/74 (83%) Strand = Plus / Plus Query: 158 ggaacaagaacgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagcca 217 |||||||| ||||||| |||||| | ||||||||||| || ||| ||||||| | || Sbjct: 8881602 ggaacaaggacgagggctccctcagggaggcctgcgataccggcctctacaccaccgtca 8881661 Query: 218 tcatttccttcctc 231 |||||||||||||| Sbjct: 8881662 tcatttccttcctc 8881675 Score = 48.1 bits (24), Expect = 0.014 Identities = 54/64 (84%) Strand = Plus / Minus Query: 168 cgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcctt 227 ||||||||||||||| ||||| |||||||| ||| ||||||| | |||||| ||||| Sbjct: 8803242 cgaggggtccctccgtgaggcgtgcgacaccggcctctacaccaccgtcatcatctcctt 8803183 Query: 228 cctc 231 |||| Sbjct: 8803182 cctc 8803179 Score = 46.1 bits (23), Expect = 0.055 Identities = 41/47 (87%) Strand = Plus / Plus Query: 149 tctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgac 195 ||||||| |||||||| ||||||| |||||| | |||||||||||| Sbjct: 8859209 tctggggccggaacaaggacgagggctccctcagggaggcctgcgac 8859255
>gb|AC119290.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H06, complete sequence Length = 144457 Score = 48.1 bits (24), Expect = 0.014 Identities = 54/64 (84%) Strand = Plus / Minus Query: 168 cgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcctt 227 ||||||||||||||| ||||| |||||||| ||| ||||||| | |||||| ||||| Sbjct: 135684 cgaggggtccctccgtgaggcgtgcgacaccggcctctacaccaccgtcatcatctcctt 135625 Query: 228 cctc 231 |||| Sbjct: 135624 cctc 135621
>dbj|AK065866.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045O11, full insert sequence Length = 1198 Score = 48.1 bits (24), Expect = 0.014 Identities = 54/64 (84%) Strand = Plus / Plus Query: 168 cgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcctt 227 ||||||||||||||| ||||| |||||||| ||| ||||||| | |||||| ||||| Sbjct: 184 cgaggggtccctccgtgaggcgtgcgacaccggcctctacaccaccgtcatcatctcctt 243 Query: 228 cctc 231 |||| Sbjct: 244 cctc 247
>dbj|AK062114.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-C02, full insert sequence Length = 1199 Score = 48.1 bits (24), Expect = 0.014 Identities = 54/64 (84%) Strand = Plus / Plus Query: 168 cgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcctt 227 ||||||||||||||| ||||| |||||||| ||| ||||||| | |||||| ||||| Sbjct: 183 cgaggggtccctccgtgaggcgtgcgacaccggcctctacaccaccgtcatcatctcctt 242 Query: 228 cctc 231 |||| Sbjct: 243 cctc 246
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.055 Identities = 47/55 (85%) Strand = Plus / Minus Query: 143 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacac 197 |||| |||||||| | |||||||||||||| |||| |||||| |||||||||| Sbjct: 25772019 ccgtcttctggggacgcaacaagaacgagggcacccttcgcgagacctgcgacac 25771965
>dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0689E12 Length = 147516 Score = 46.1 bits (23), Expect = 0.055 Identities = 47/55 (85%) Strand = Plus / Minus Query: 143 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacac 197 |||| |||||||| | |||||||||||||| |||| |||||| |||||||||| Sbjct: 44230 ccgtcttctggggacgcaacaagaacgagggcacccttcgcgagacctgcgacac 44176
>dbj|AK106319.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-E05, full insert sequence Length = 1076 Score = 46.1 bits (23), Expect = 0.055 Identities = 68/83 (81%) Strand = Plus / Plus Query: 167 acgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcct 226 ||||||| ||||||| |||||||||||||| ||| |||| || | |||||| |||| Sbjct: 198 acgagggcaccctccgtgaggcctgcgacaccggccactacaacaccgtcatcatctcct 257 Query: 227 tcctcgacgtcttcggccgcggc 249 ||||| ||||||||||| |||| Sbjct: 258 tcctcagcgtcttcggccacggc 280
>dbj|AK073843.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068H05, full insert sequence Length = 1152 Score = 46.1 bits (23), Expect = 0.055 Identities = 41/47 (87%) Strand = Plus / Plus Query: 149 tctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgac 195 ||||||| |||||||| ||||||| |||||| | |||||||||||| Sbjct: 160 tctggggccggaacaaggacgagggctccctcagggaggcctgcgac 206
>dbj|D55710.1| Oryza sativa (japonica cultivar-group) mRNA for chitinase, complete cds Length = 1145 Score = 46.1 bits (23), Expect = 0.055 Identities = 68/83 (81%) Strand = Plus / Plus Query: 167 acgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcct 226 ||||||| ||||||| |||||||||||||| ||| |||| || | |||||| |||| Sbjct: 176 acgagggcaccctccgtgaggcctgcgacaccggccactacaacaccgtcatcatctcct 235 Query: 227 tcctcgacgtcttcggccgcggc 249 ||||| ||||||||||| |||| Sbjct: 236 tcctcagcgtcttcggccacggc 258
>ref|XM_550226.1| Oryza sativa (japonica cultivar-group), mRNA Length = 759 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 cctccgcgaggcctgcgaca 196 |||||||||||||||||||| Sbjct: 133 cctccgcgaggcctgcgaca 152
>ref|XM_549854.1| Oryza sativa (japonica cultivar-group), mRNA Length = 711 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 cctccgcgaggcctgcgaca 196 |||||||||||||||||||| Sbjct: 139 cctccgcgaggcctgcgaca 158
>ref|NM_170175.1| Drosophila melanogaster CG31105-PA (CG31105) mRNA, complete cds Length = 1629 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 ccttcctcgacgtcttcggc 243 |||||||||||||||||||| Sbjct: 527 ccttcctcgacgtcttcggc 546
>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 Length = 2324132 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cttcctcgacgtcttcggcc 244 |||||||||||||||||||| Sbjct: 1974712 cttcctcgacgtcttcggcc 1974731
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 cctccgcgaggcctgcgaca 196 |||||||||||||||||||| Sbjct: 24592100 cctccgcgaggcctgcgaca 24592119
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 cctccgcgaggcctgcgaca 196 |||||||||||||||||||| Sbjct: 3196087 cctccgcgaggcctgcgaca 3196068 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 cctccgcgaggcctgcgaca 196 |||||||||||||||||||| Sbjct: 403264 cctccgcgaggcctgcgaca 403245
>gb|AC008205.7|AC008205 Drosophila melanogaster, chromosome 3R, region 96A-96B, BAC clone BACR33F18, complete sequence Length = 215711 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 ccttcctcgacgtcttcggc 243 |||||||||||||||||||| Sbjct: 145304 ccttcctcgacgtcttcggc 145285
>dbj|AP003209.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1189A09 Length = 167761 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 cctccgcgaggcctgcgaca 196 |||||||||||||||||||| Sbjct: 13716 cctccgcgaggcctgcgaca 13697
>dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0041E11 Length = 146335 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 cctccgcgaggcctgcgaca 196 |||||||||||||||||||| Sbjct: 139875 cctccgcgaggcctgcgaca 139856
>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0005A05 Length = 190834 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 cctccgcgaggcctgcgaca 196 |||||||||||||||||||| Sbjct: 155102 cctccgcgaggcctgcgaca 155083
>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0482C06 Length = 182779 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 cctccgcgaggcctgcgaca 196 |||||||||||||||||||| Sbjct: 43465 cctccgcgaggcctgcgaca 43446
>gb|AE003749.3| Drosophila melanogaster chromosome 3R, section 87 of 118 of the complete sequence Length = 228433 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 ccttcctcgacgtcttcggc 243 |||||||||||||||||||| Sbjct: 148874 ccttcctcgacgtcttcggc 148855
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 cctccgcgaggcctgcgaca 196 |||||||||||||||||||| Sbjct: 24520306 cctccgcgaggcctgcgaca 24520325
>emb|AL954852.5|CNS08CD6 Oryza sativa chromosome 12, . BAC OJ1573_A06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 143895 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 cctccgcgaggcctgcgaca 196 |||||||||||||||||||| Sbjct: 36966 cctccgcgaggcctgcgaca 36985
>emb|CT573044.1| Pig DNA sequence from clone XX-BE156J14 on chromosome 14, complete sequence Length = 184551 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 cagcctccttcctactcctc 72 |||||||||||||||||||| Sbjct: 28263 cagcctccttcctactcctc 28244 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,701,530 Number of Sequences: 3902068 Number of extensions: 1701530 Number of successful extensions: 31361 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 31099 Number of HSP's gapped (non-prelim): 252 length of query: 263 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 241 effective length of database: 17,147,199,772 effective search space: 4132475145052 effective search space used: 4132475145052 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
