ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet98e08 |
|---|---|
| Clone Library Name | barley_pub |
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 75.1 bits (183), Expect = 4e-14 Identities = 46/96 (47%), Positives = 56/96 (58%), Gaps = 3/96 (3%) Frame = +1 Query: 127 FDSIFAFGDSFTDTGNNPVVFGWYNIFDVVMRPPYGMTFFGGRPTGRNCNGRLIIDFIAQ 306 F +IF FGDS +DTG FG PP+G +FFG P GR C+GRL+IDFIA+ Sbjct: 28 FPAIFNFGDSNSDTGGLSAAFGQAG-------PPHGSSFFGS-PAGRYCDGRLVIDFIAE 79 Query: 307 GLGLRLVPPYLSHKGS-FRQGANFAVGSA--TALNS 405 LGL + +L GS F GANFA + ALNS Sbjct: 80 SLGLPYLSAFLDSVGSNFSHGANFATAGSPIRALNS 115
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 74.7 bits (182), Expect = 5e-14 Identities = 46/98 (46%), Positives = 55/98 (56%), Gaps = 1/98 (1%) Frame = +1 Query: 103 AYLRGGGPFDSIFAFGDSFTDTGNNPVVFGWYNIFDVVMRPPYGMTFFGGRPTGRNCNGR 282 AY F +IF FGDS +DTG F + PPYG TFF R TGR +GR Sbjct: 24 AYASETCDFPAIFNFGDSNSDTGGKAAAF-------YPLNPPYGETFFH-RSTGRYSDGR 75 Query: 283 LIIDFIAQGLGLRLVPPYLSHKGS-FRQGANFAVGSAT 393 LIIDFIA+ L + PYLS GS F+ GA+FA +T Sbjct: 76 LIIDFIAESFNLPYLSPYLSSLGSNFKHGADFATAGST 113
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 52.8 bits (125), Expect = 2e-07 Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 13/99 (13%) Frame = +1 Query: 133 SIFAFGDSFTDTGNNPVVFGWYNIFDVVMR---PPYGMTFFGGRPTGRNCNGRLIIDFIA 303 ++F FGDS DTGNN N D ++ PYGM F G TGR NGR+ D+I+ Sbjct: 125 AVFFFGDSIFDTGNN-------NNLDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYIS 177 Query: 304 QGLGLR-LVPPYLSHK---------GSFRQGANFAVGSA 390 + LG++ +VP Y+ K G +FA G A Sbjct: 178 KYLGVKEIVPAYVDKKLQQNNELQQSDLLTGVSFASGGA 216
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 48.5 bits (114), Expect = 4e-06 Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 7/93 (7%) Frame = +1 Query: 133 SIFAFGDSFTDTGNNPVVFGWYNIFDVVMRP---PYGMTFFGGRPTGRNCNGRLIIDFIA 303 ++F FGDS DTGNN N + ++ PYGM F TGR NG + D++A Sbjct: 204 AVFFFGDSVFDTGNN-------NNLETKIKSNYRPYGMDFKFRVATGRFSNGMVASDYLA 256 Query: 304 QGLGLR-LVPPYLSHK---GSFRQGANFAVGSA 390 + +G++ +VP YL K G +FA G A Sbjct: 257 KYMGVKEIVPAYLDPKIQPNDLLTGVSFASGGA 289
>LIP1_PHOLU (P40601) Lipase 1 precursor (EC 3.1.1.3) (Triacylglycerol lipase)| Length = 645 Score = 40.0 bits (92), Expect = 0.001 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 3/94 (3%) Frame = +1 Query: 127 FDSIFAFGDSFTDTGNNPVVFGWYNIFDVVMRPPYGMTFFGGRPTGRNCNG---RLIIDF 297 +++++ FGDS +D GNN GR T NG +L DF Sbjct: 25 YNNLYVFGDSLSDGGNN------------------------GRYTVDGINGTESKLYNDF 60 Query: 298 IAQGLGLRLVPPYLSHKGSFRQGANFAVGSATAL 399 IAQ LG+ LV S + G N+A G ATA+ Sbjct: 61 IAQQLGIELV-------NSKKGGTNYAAGGATAV 87
>YZR3_ARATH (Q8GZ43) RanBP2-type zinc-finger protein At1g67325| Length = 288 Score = 31.2 bits (69), Expect = 0.61 Identities = 26/88 (29%), Positives = 36/88 (40%) Frame = +1 Query: 91 SAEAAYLRGGGPFDSIFAFGDSFTDTGNNPVVFGWYNIFDVVMRPPYGMTFFGGRPTGRN 270 S+ AYL GGP ++ G + +F+ PPY + F GG P N Sbjct: 71 SSPGAYLGSGGP-PPVYMGGSPYGSP-----------LFNGSSMPPYDVPFSGGSPYHFN 118 Query: 271 CNGRLIIDFIAQGLGLRLVPPYLSHKGS 354 N R+ + L + PPY H GS Sbjct: 119 YNSRMPAGAHYRPLHMSGPPPY--HGGS 144
>SNF21_SCHPO (Q9UTN6) SNF2-family ATP dependent chromatin remodeling factor| snf21 (EC 3.6.1.-) (ATP-dependent helicase snf21) Length = 1199 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Frame = +3 Query: 180 RRLRLVQHL*RCDAPSLRHDLLRRSPHWSQLQRPPHHRLHCSRPRLASRAT--IPVAQGE 353 ++LRL++ SLRH ++ PH + R+ C RP+L +AT V + + Sbjct: 202 KKLRLIKQ-----QESLRHQVMHCQPHLRTIVNAVE-RMSCRRPKLVPQATRLTEVLERQ 255 Query: 354 LPAGRQLRCRQR 389 + R+ R +Q+ Sbjct: 256 QRSDRERRLKQK 267
>WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) Length = 487 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Frame = -1 Query: 254 RPPKKVMP*GGRITTSKMLYQPKTTGLLPV---SVKESPKAKMESNGPPPR 111 RPP ++P GGR T++K P G P + P + PPPR Sbjct: 121 RPP--ILPPGGRATSAKPFSSPSGPGRFPAPSPGHRSGPPEPPRNRMPPPR 169
>EMS_DROME (P18488) Homeotic protein empty spiracles| Length = 497 Score = 28.9 bits (63), Expect = 3.0 Identities = 18/69 (26%), Positives = 28/69 (40%) Frame = -1 Query: 320 RKPRP*AMKSMMRRPLQLRPVGRPPKKVMP*GGRITTSKMLYQPKTTGLLPVSVKESPKA 141 R P P AM+ +++P PPK V P QP ++ L +S + Sbjct: 184 RSPAPPAMEQAENPAQRIQPPHTPPKSVSP---------QSSQPSSSPTLLISSPHATPP 234 Query: 140 KMESNGPPP 114 + + PPP Sbjct: 235 QQQQQQPPP 243
>WASIP_MOUSE (Q8K1I7) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) Length = 493 Score = 28.9 bits (63), Expect = 3.0 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Frame = -1 Query: 254 RPPKKVMP*GGRITTSKMLYQPKTTGLLPV---SVKESPKAKMESNGPPPR 111 RPP ++P GGR T++K P G P + P + PPPR Sbjct: 126 RPP--ILPPGGRATSAKPFSPPSGPGRFPAPSPGHRSGPPEPPRNRMPPPR 174
>YHL1_EBV (P03181) Hypothetical protein BHLF1| Length = 660 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = +2 Query: 53 QPSWQRRSPFCSRQLRRPTSAVAGHSTP 136 Q W R+P C R RR + A GH P Sbjct: 145 QVQWSARNPGCPRTWRRRSGAQRGHPPP 172
>DYNA_MOUSE (O08788) Dynactin-1 (150 kDa dynein-associated polypeptide)| (DP-150) (DAP-150) (p150-glued) Length = 1281 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 4/76 (5%) Frame = -1 Query: 329 GTRRKPRP*AMKSMMRRPLQLRP----VGRPPKKVMP*GGRITTSKMLYQPKTTGLLPVS 162 G + K P A K+ RRP RP V P + P G +P T P++ Sbjct: 133 GLKPKKAPTARKTTTRRPKPTRPASTGVAGPSSSLGPSGSASAGELSSSEPSTPAQTPLA 192 Query: 161 VKESPKAKMESNGPPP 114 P + S G P Sbjct: 193 APIIPTPALTSPGAAP 208
>DYNA_RAT (P28023) Dynactin-1 (150 kDa dynein-associated polypeptide)| (DP-150) (DAP-150) (p150-glued) Length = 1280 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 4/76 (5%) Frame = -1 Query: 329 GTRRKPRP*AMKSMMRRPLQLRP----VGRPPKKVMP*GGRITTSKMLYQPKTTGLLPVS 162 G + K P A K+ RRP RP V P + P G +P T P++ Sbjct: 133 GLKPKKAPTARKTTTRRPKPTRPASTGVAGPSSSLGPSGSASAGELSSSEPSTPAQTPLA 192 Query: 161 VKESPKAKMESNGPPP 114 P + S G P Sbjct: 193 APIIPTPALTSPGAAP 208
>VGFR2_MOUSE (P35918) Vascular endothelial growth factor receptor 2 precursor| (EC 2.7.10.1) (VEGFR-2) (Protein-tyrosine kinase receptor flk-1) (Fetal liver kinase 1) (Kinase NYK) Length = 1367 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = +1 Query: 181 VVFGWYNIFDVVMRPPYGMTFFGGRPTGRNCNGR 282 VV Y I+DV++ PP+ + G NC R Sbjct: 218 VVVVGYRIYDVILSPPHEIELSAGEKLVLNCTAR 251
>Y337_MESFL (Q6F1C9) UPF0078 membrane protein Mfl337| Length = 256 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = +1 Query: 133 SIFAFGDSFTDTGNNPVVFGWYNIFDVVMRPPYGMTFFGGRPTGR 267 S+F DSF + +VF +YN+F +G F G TG+ Sbjct: 175 SLFNGYDSFIVAWDKHIVFSFYNLFHKFSSNIHGSNFADGMLTGQ 219
>VGFR2_RAT (O08775) Vascular endothelial growth factor receptor 2 precursor| (EC 2.7.10.1) (VEGFR-2) (Protein-tyrosine kinase receptor flk-1) (Fetal liver kinase 1) Length = 1343 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = +1 Query: 196 YNIFDVVMRPPYGMTFFGGRPTGRNCNGR 282 Y I+DVV+ PP+ + G NC R Sbjct: 221 YRIYDVVLSPPHEIELSAGEKLVLNCTAR 249
>IF2_PROMM (Q7V5M4) Translation initiation factor IF-2| Length = 1125 Score = 27.7 bits (60), Expect = 6.8 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Frame = -1 Query: 398 RAVALPTAKLAPCRKLPLCDRYGGTRRK-PRP*AMKSMMRRPLQLRPVGRPPKKVMP*GG 222 + V+ P + AP R P + RK P+P ++ RP RPV PP + P G Sbjct: 211 KIVSRPQSPTAPGRSAPPAKPSIPSERKAPKP----ELVGRPKPKRPVVAPPSRPDPEGQ 266 Query: 221 RITTSKMLYQPKTTG 177 R + P+ G Sbjct: 267 RPDKKRPGISPRPIG 281
>PHLPP_RAT (Q9WTR8) PH domain leucine-rich repeat protein phosphatase (EC| 3.1.3.16) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory protein) Length = 1696 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +3 Query: 279 PPHHRLHCSRPRLASRATIPVAQGELPAG 365 PPHH + S+PR S T + Q + P G Sbjct: 360 PPHHPVRSSQPRPPSPKTSALLQPKAPTG 388
>YKAA_CAEEL (P34261) Putative amino-acid permease B0303.11| Length = 903 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Frame = +1 Query: 274 NGRLIIDFIAQGLGLRLVPPYL-SHKGSFRQGANFAVGSAT 393 N R+ + ++ + GL ++ PYL + GSF +GA+ V + T Sbjct: 714 NARIDVFWLREAGGLTMLAPYLLTQAGSFLEGAHIRVFTKT 754
>GLK_SYNY3 (Q55855) Glucokinase (EC 2.7.1.2) (Glucose kinase)| Length = 355 Score = 27.3 bits (59), Expect = 8.8 Identities = 10/34 (29%), Positives = 21/34 (61%) Frame = +1 Query: 277 GRLIIDFIAQGLGLRLVPPYLSHKGSFRQGANFA 378 GR+ I+ + G+G+ ++ +L H+ R+ A F+ Sbjct: 201 GRISIERVVSGMGIAMIYEFLRHQYPERESAQFS 234
>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic| chromosome-associated protein) (MCAP) Length = 1400 Score = 27.3 bits (59), Expect = 8.8 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = -1 Query: 266 RPVGRPPKKVMP*GGRITTSKMLYQPKTTGLLPVSVKESPKAK 138 RPV RPP++ P G K +PKT PV+ K+ K K Sbjct: 1195 RPVIRPPEQSAPPPGAPDKDKQKQEPKT----PVAPKKDLKIK 1233
>PDXY_PROMI (Q51892) Pyridoxamine kinase (EC 2.7.1.35) (PM kinase)| Length = 289 Score = 27.3 bits (59), Expect = 8.8 Identities = 22/68 (32%), Positives = 29/68 (42%) Frame = +3 Query: 171 QQPRRLRLVQHL*RCDAPSLRHDLLRRSPHWSQLQRPPHHRLHCSRPRLASRATIPVAQG 350 QQ ++ LV+HL R RHD + L H H SRP + PV G Sbjct: 174 QQGPKIVLVKHLSRA---GFRHD------RFEMLLVTADHSWHVSRPLVDFGERQPVGVG 224 Query: 351 ELPAGRQL 374 +L +G L Sbjct: 225 DLTSGLML 232
>ITB4_RAT (Q64632) Integrin beta-4 precursor (GP150) (CD104 antigen)| Length = 1807 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Frame = -3 Query: 237 HAVG--RAHHNVKDVVPAEDDGVVASVREGVTKGKDGVEWPATAEVGR 100 H VG H+ +++ + A D +R G KG+D V W T V R Sbjct: 755 HMVGFKEDHYMLRENLMASDHLDTPMLRSGNLKGRDTVRWKITNNVQR 802
>VGFR2_HUMAN (P35968) Vascular endothelial growth factor receptor 2 precursor| (EC 2.7.10.1) (VEGFR-2) (Kinase insert domain receptor) (Protein-tyrosine kinase receptor Flk-1) (CD309 antigen) Length = 1356 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +1 Query: 181 VVFGWYNIFDVVMRPPYGMTFFGGRPTGRNCNGR 282 VV Y I+DVV+ P +G+ G NC R Sbjct: 216 VVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTAR 249
>ACEA_PICJA (Q9HFN2) Isocitrate lyase (EC 4.1.3.1) (Isocitrase)| (Isocitratase) (ICL) Length = 550 Score = 27.3 bits (59), Expect = 8.8 Identities = 8/17 (47%), Positives = 12/17 (70%) Frame = +2 Query: 20 RWVVFVEDWWRQPSWQR 70 R V VE WW++P W++ Sbjct: 17 REVAAVEQWWKEPRWRK 33 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,791,101 Number of Sequences: 219361 Number of extensions: 1160782 Number of successful extensions: 3775 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3628 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3766 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
