ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet98e04 |
|---|---|
| Clone Library Name | barley_pub |
>CWPX_ARATH (P47925) Putative cell wall protein precursor| Length = 140 Score = 48.9 bits (115), Expect = 6e-06 Identities = 37/95 (38%), Positives = 43/95 (45%), Gaps = 19/95 (20%) Frame = +3 Query: 195 RHLPAEKPAEDVVKRPDTF----QEGTALIPGIGRYELGTH-------YIPDIGG--LDH 335 RH+P DV K PD + T LIPG+GR+ L Y P G Sbjct: 29 RHVPKSPKTTDV-KHPDFLVTIEPKPTILIPGVGRFLLPPKCKKPFYPYNPVTGAPLTGG 87 Query: 336 SIPAAANGQF------IPGADDTWVPNPGFEVPNP 422 IP+ GQ +PG DDT VPNPGFE P P Sbjct: 88 GIPSYNGGQGAGPHTQLPGGDDTLVPNPGFEAPTP 122
>ERP_MYCTU (P0A5P4) Exported repetitive protein precursor (Cell surface| protein pirG) (EXP53) Length = 284 Score = 34.3 bits (77), Expect = 0.16 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Frame = -3 Query: 454 THQGESEPGRKGLGTSKPGLGTQVSSAPGMNCP-LAAAGMLWSSPPMSGM*WVPSSYL-P 281 T G++ G G G + PGL + ++PG+ P L + G+ +P + G P + L P Sbjct: 80 TGSGDASTGLTGPGLTSPGLTSPGLTSPGLTDPALTSPGL---TPTLPGSLAAPGTTLAP 136 Query: 280 IPGISAVPSWNVSGRFTTSSAGFSAG 203 PG+ A P+ ++ TS G + G Sbjct: 137 TPGVGANPA--LTNPALTSPTGATPG 160
>ERP_MYCBO (P0A5P5) Exported repetitive protein precursor (Cell surface| protein pirG) (EXP53) Length = 284 Score = 34.3 bits (77), Expect = 0.16 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Frame = -3 Query: 454 THQGESEPGRKGLGTSKPGLGTQVSSAPGMNCP-LAAAGMLWSSPPMSGM*WVPSSYL-P 281 T G++ G G G + PGL + ++PG+ P L + G+ +P + G P + L P Sbjct: 80 TGSGDASTGLTGPGLTSPGLTSPGLTSPGLTDPALTSPGL---TPTLPGSLAAPGTTLAP 136 Query: 280 IPGISAVPSWNVSGRFTTSSAGFSAG 203 PG+ A P+ ++ TS G + G Sbjct: 137 TPGVGANPA--LTNPALTSPTGATPG 160
>ADP2_MYCGA (Q9REM8) Adhesin P1 precursor (Cytadhesin P1) (Attachment protein)| (Adherence protein A) Length = 1122 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/54 (33%), Positives = 25/54 (46%) Frame = +3 Query: 243 DTFQEGTALIPGIGRYELGTHYIPDIGGLDHSIPAAANGQFIPGADDTWVPNPG 404 D + G AL P ++G H++P + S P ANG G+ TW N G Sbjct: 461 DATRNGLALAPASLGQDVGYHFVPRLAVGGVSSPRGANGNIFLGSAITWGTNGG 514
>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)| Length = 815 Score = 33.5 bits (75), Expect = 0.28 Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Frame = +2 Query: 254 GGDGADPG--DREVRTGHPLHPGHRRAR--PQHPGRRQRAVHPRGRR-HLGAQPRLRGAQ 418 GG G P DR G P P H P HPG HP G H+G P +RG Sbjct: 134 GGPGGHPHWEDRMGMGGGPPPPPHMHPHMHPHHPGGPMG--HPHGPHPHMGGPPPMRGMS 191 Query: 419 PFPP 430 P P Sbjct: 192 PMHP 195
>SAS_DROME (Q04164) Putative epidermal cell surface receptor precursor (Stranded| at second protein) Length = 1693 Score = 33.5 bits (75), Expect = 0.28 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 8/53 (15%) Frame = +2 Query: 296 GHPLHPGHRRARPQHPGRRQRAVHPRG--------RRHLGAQPRLRGAQPFPP 430 GHP+HPGH HPG+ Q+ H G +HL Q + G P PP Sbjct: 1107 GHPVHPGHGGPPRIHPGQTQKDNHNLGPQVRIEQILQHL--QQTVPGGPPPPP 1157
>ADP1_MYCGA (Q49379) Adhesin P1 precursor (Cytadhesin P1) (Attachment protein)| Length = 1122 Score = 32.0 bits (71), Expect = 0.80 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = +3 Query: 243 DTFQEGTALI-PGIGRYELGTHYIPDIGGLDHSIPAAANGQFIPGADDTWVPNPG 404 D + G AL P +G+ ++G H++P + S P ANG G+ TW N G Sbjct: 461 DATRNGLALAAPALGQ-DVGYHFVPRLAVGGVSSPRGANGNIFLGSAITWGTNGG 514
>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RPB1) Length = 1970 Score = 31.6 bits (70), Expect = 1.0 Identities = 22/80 (27%), Positives = 30/80 (37%) Frame = +3 Query: 207 AEKPAEDVVKRPDTFQEGTALIPGIGRYELGTHYIPDIGGLDHSIPAAANGQFIPGADDT 386 A P + + +G G +G+ P G S + A+G F PG Sbjct: 1506 APSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASG-FSPGYSPA 1564 Query: 387 WVPNPGFEVPNPFRPGSDSP 446 W P PG +P PG SP Sbjct: 1565 WSPTPG----SPGSPGPSSP 1580
>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RPB1) Length = 1970 Score = 31.6 bits (70), Expect = 1.0 Identities = 22/80 (27%), Positives = 30/80 (37%) Frame = +3 Query: 207 AEKPAEDVVKRPDTFQEGTALIPGIGRYELGTHYIPDIGGLDHSIPAAANGQFIPGADDT 386 A P + + +G G +G+ P G S + A+G F PG Sbjct: 1506 APSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASG-FSPGYSPA 1564 Query: 387 WVPNPGFEVPNPFRPGSDSP 446 W P PG +P PG SP Sbjct: 1565 WSPTPG----SPGSPGPSSP 1580
>PUTX_EMENI (P18696) Proline-specific permease (Proline transport protein)| Length = 550 Score = 31.6 bits (70), Expect = 1.0 Identities = 23/63 (36%), Positives = 34/63 (53%) Frame = -3 Query: 391 TQVSSAPGMNCPLAAAGMLWSSPPMSGM*WVPSSYLPIPGISAVPSWNVSGRFTTSSAGF 212 TQ AP + + A ++W + G ++YLPI G+S VP + GRFT S GF Sbjct: 68 TQTGPAPLLMSYIVMASIVWFVMNVLGE---MTTYLPIRGVS-VPY--LIGRFTEPSIGF 121 Query: 211 SAG 203 ++G Sbjct: 122 ASG 124
>MSL5_YEAST (Q12186) Branchpoint-bridging protein MSL5 (MUD synthesis lethal 5| protein) Length = 476 Score = 30.8 bits (68), Expect = 1.8 Identities = 19/58 (32%), Positives = 27/58 (46%) Frame = -3 Query: 421 GLGTSKPGLGTQVSSAPGMNCPLAAAGMLWSSPPMSGM*WVPSSYLPIPGISAVPSWN 248 GL +S G + P + P + +S PP GM V SS P PG+S P ++ Sbjct: 398 GLTSSSFSSGVPGIAPPPLQSPPESEQPKFSLPPPPGMTTVQSSIAPPPGLSGPPGFS 455
>GIPC1_HUMAN (O14908) GIPC PDZ domain-containing protein 1 (RGS19-interacting| protein 1) (GAIP C-terminus-interacting protein) (RGS-GAIP-interacting protein) (Tax interaction protein 2) (TIP-2) Length = 333 Score = 30.8 bits (68), Expect = 1.8 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = -3 Query: 442 ESEPGRKGLGTSKPG-LGTQVSSAPGMNCP 356 E+EPGR GLG +PG LG S P M P Sbjct: 19 EAEPGRGGLGVGEPGPLGGGGSGGPQMGLP 48
>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (RPB1) (Fragment) Length = 467 Score = 30.4 bits (67), Expect = 2.3 Identities = 21/59 (35%), Positives = 26/59 (44%) Frame = +3 Query: 270 IPGIGRYELGTHYIPDIGGLDHSIPAAANGQFIPGADDTWVPNPGFEVPNPFRPGSDSP 446 IPG+G + P G S + A+G F PG W P PG +P PG SP Sbjct: 25 IPGLGAAGR-SGMTPGAAGFSPSAASDASG-FSPGYSPAWSPTPG----SPGSPGPSSP 77
>COLI_MACNE (P01201) Corticotropin-lipotropin precursor (Pro-opiomelanocortin)| (POMC) [Contains: NPP; Melanotropin gamma (Gamma-MSH); Potential peptide; Corticotropin (Adrenocorticotropic hormone) (ACTH); Melanotropin alpha (Alpha-MSH); Corticotropin-like Length = 264 Score = 30.4 bits (67), Expect = 2.3 Identities = 21/69 (30%), Positives = 29/69 (42%) Frame = +2 Query: 251 PGGDGADPGDREVRTGHPLHPGHRRARPQHPGRRQRAVHPRGRRHLGAQPRLRGAQPFPP 430 P GDGA PG RE + + + R +P RR V+P G A+ FP Sbjct: 120 PRGDGAGPGPREGKRSYSME-HFRWGKPVGKKRRPVKVYPNGAED-------ESAEAFPL 171 Query: 431 RLRLSLMGR 457 + L G+ Sbjct: 172 EFKRELTGQ 180
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 30.4 bits (67), Expect = 2.3 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 4/48 (8%) Frame = +2 Query: 308 HPGHRRARPQHPGRRQRAVHPRGRRHLGAQP----RLRGAQPFPPRLR 439 H R A P P +RQ+ PRGRR P R R P PP R Sbjct: 523 HSPSRSASPS-PRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRR 569
>SLDA1_GLUOX (Q70JN9) Glycerol dehydrogenase large subunit precursor (EC| 1.1.99.22) (Gluconate/polyol dehydrogenase large subunit) (D-sorbitol dehydrogenase subunit sldA) (SLDH) (D-arabitol dehydrogenase large subunit) (ARDH) Length = 743 Score = 29.6 bits (65), Expect = 4.0 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%) Frame = +3 Query: 342 PAAANGQFIP----GADDTWVPNPGFEVPNPFRPGSDSP 446 P AAN QF P G+ + VP PG N F P ++P Sbjct: 19 PLAANAQFAPAGSGGSPTSSVPGPGNGSGNSFEPTENTP 57
>JHD2A_MOUSE (Q6PCM1) JmjC domain-containing histone demethylation protein 2A| (EC 1.14.11.-) (Jumonji domain-containing protein 1A) Length = 1323 Score = 29.6 bits (65), Expect = 4.0 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 8/81 (9%) Frame = -3 Query: 460 CSTHQGE--SEPGRK------GLGTSKPGLGTQVSSAPGMNCPLAAAGMLWSSPPMSGM* 305 CS Q + S+P K L KP LGT V + + P+A G S P S Sbjct: 753 CSNRQFKLFSKPALKEDLKQTSLSGEKPTLGTMVQQSSPVLEPVAVCGEAASKPASSVKP 812 Query: 304 WVPSSYLPIPGISAVPSWNVS 242 P+S P+ ++ + S NV+ Sbjct: 813 TCPTSTSPLNWLADLTSGNVN 833
>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135 protein)| (IER 2.9/ER2.6) Length = 676 Score = 29.3 bits (64), Expect = 5.2 Identities = 31/141 (21%), Positives = 38/141 (26%), Gaps = 9/141 (6%) Frame = +2 Query: 68 PVPITASYPATRRGRHGQQXXXXXXXXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXH 247 P P A PA+ + G + Sbjct: 503 PAPAAAPGPASAGAQIGTPAAAAAVTAAAAAPSVARSSAPSPAVTAAATSTAAAISTRAP 562 Query: 248 VPGGDGADPGDREVRTGHPLHPGHRRA---RPQHPGRRQRAVHPRGRRHL------GAQP 400 P G P R G P G RA R +PGR +R R L AQ Sbjct: 563 TPSPAGRAPAADPRRAGAPALAGAARAEVGRNGNPGRERRPASAMARGDLDPGPESSAQK 622 Query: 401 RLRGAQPFPPRLRLSLMGRAR 463 R R +R SL+G R Sbjct: 623 RRRTEMEVAAWVRESLLGTPR 643
>WDR46_CANFA (Q5TJE7) WD-repeat protein 46| Length = 612 Score = 29.3 bits (64), Expect = 5.2 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 8/63 (12%) Frame = +2 Query: 263 GADPG-------DREVRTGHPLHPGHRRARPQHPGRRQRAVHPRGRRHLGAQPRLRGAQ- 418 GA PG +RE+R P + + + + PG+ Q PR +R+L Q L GAQ Sbjct: 39 GASPGPPRNKKRNRELRPQRPKNINLPK-KSRIPGKPQFPKKPREQRNLEPQRNLSGAQD 97 Query: 419 PFP 427 PFP Sbjct: 98 PFP 100
>YT44_STRFR (P20188) Hypothetical 44.4 kDa protein in transposon Tn4556| Length = 395 Score = 29.3 bits (64), Expect = 5.2 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = +2 Query: 305 LHPGHRRARPQHPGRRQRAVH-PRGRRHLGAQPRLRGA 415 L PG + R QH + QR VH PR H G Q R + A Sbjct: 162 LRPGQQLRRDQHLQQVQRVVHRPRREVHGGGQQRRQAA 199
>KI13A_MOUSE (Q9EQW7) Kinesin-like protein KIF13A| Length = 1749 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = +3 Query: 339 IPAAANGQFIPGADDTWVPNPGFEVPNP 422 +PA +G IPGA WVP PG E P Sbjct: 1136 VPAPGSG--IPGAPADWVPPPGMETHIP 1161
>EXP24_ARATH (Q9FL76) Alpha-expansin 24 precursor (AtEXPA24) (At-EXP24) (AtEx24)| (Ath-ExpAlpha-1.19) Length = 312 Score = 29.3 bits (64), Expect = 5.2 Identities = 22/60 (36%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Frame = +2 Query: 245 HVPGG-DGADPGDREVRTGHPLHPGHRRARPQHPGRRQRAVHPRGRRHLGAQPRLRGAQP 421 HVPGG GA P H HP H A P H HP GA P G P Sbjct: 33 HVPGGRPGAHPS-HGAHPAHGAHPSH-GAHPSHGAHPSHGAHPSH----GALPSHGGQVP 86
>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and| gyrB (ORF 3) Length = 437 Score = 28.9 bits (63), Expect = 6.8 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = +2 Query: 296 GHPLHPGHRRARPQHPGRRQRAVHPRGRRHLGAQPRLR-GAQPFPPRLR 439 G H G RRA RQ+ HPRGR A R++ GA P RLR Sbjct: 115 GRNRHAGDRRAPGVDSRLRQQHQHPRGRH---ASDRVQDGAHPRRQRLR 160
>KI13A_HUMAN (Q9H1H9) Kinesin-like protein KIF13A (Kinesin-like protein RBKIN)| Length = 1805 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 339 IPAAANGQFIPGADDTWVPNPGFEVPNP 422 +PA +G IPGA W+P PG E P Sbjct: 1149 VPAPGSG--IPGAPADWIPPPGMETHIP 1174
>GCF_HUMAN (P16383) GC-rich sequence DNA-binding factor (GCF) (Transcription| factor 9) (TCF-9) Length = 784 Score = 28.9 bits (63), Expect = 6.8 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 12/67 (17%) Frame = +2 Query: 293 TGHPLHPGHRRARPQHPGRRQRAVHPRGRRHLGAQPRLRG------------AQPFPPRL 436 T H HRR R + ++++ GRR LG +P L G A PR Sbjct: 6 TNRERHWTHRRRRQRTRKKKKKKKRVLGRRALGPRPWLTGRKGLFGSARLIPATAMAPRS 65 Query: 437 RLSLMGR 457 RL +GR Sbjct: 66 RLLSLGR 72
>UXUA_BACFR (Q650A0) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 396 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/42 (28%), Positives = 24/42 (57%) Frame = -2 Query: 236 LHHVLRGFLCRQMARRRALPGEARRGHQRREDQQGRRLAGHA 111 ++HV++ FL Q R+ ++P GHQ +D + + G++ Sbjct: 332 MYHVMKAFLELQQRRKVSIPMRPDHGHQMVDDLKKKTNPGYS 373
>UXUA_BACFN (Q5LIV6) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 396 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/42 (28%), Positives = 24/42 (57%) Frame = -2 Query: 236 LHHVLRGFLCRQMARRRALPGEARRGHQRREDQQGRRLAGHA 111 ++HV++ FL Q R+ ++P GHQ +D + + G++ Sbjct: 332 MYHVMKAFLELQQRRKVSIPMRPDHGHQMVDDLKKKTNPGYS 373
>ACVS1_PENCH (P19787) N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase| (EC 6.3.2.26) (Delta-(L-alpha-aminoadipyl)-L-cysteinyl-D-valine synthetase) (ACV synthetase) (ACVS) Length = 3746 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%) Frame = +3 Query: 318 IGGLDHSIPAAANGQFIPGADDT---WVPNP 401 + GLD +P+ ++ Q +P DDT WV NP Sbjct: 3699 LNGLDSLLPSDSDVQLVPLTDDTHFSWVGNP 3729
>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2161 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 3/40 (7%) Frame = +2 Query: 302 PLHPGHRRARPQHPGRRQRAVHPRG---RRHLGAQPRLRG 412 P P H A P HP + P R LG QP LRG Sbjct: 1010 PPQPHHHHAHPPHPPEMETGGSPDDPPPRLALGPQPSLRG 1049
>GUN16_TRIHA (Q8J0I9) Endo-1,6-beta-D-glucanase BGN16.3 precursor (EC 3.2.1.75)| (Beta-1,6-glucanase BGN16.3) (Glucan endo-1,6-beta-glucosidase BGN16.3) Length = 490 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Frame = -3 Query: 463 TCSTHQGESEPGRKG--LGTSKPGLGTQVSSAPGMNCPLAAAGMLWSSP 323 T + G ++PG G LG + T ++ G+N L G WS+P Sbjct: 135 TYDDNGGNADPGMTGFNLGDRGTAMATMLAQMKGLNSNLQIFGSPWSAP 183
>CLPP_PINCO (P36387) ATP-dependent Clp protease proteolytic subunit (EC| 3.4.21.92) (Endopeptidase Clp) Length = 205 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = +3 Query: 219 AEDVVKRPDTFQE--GTALIPGIGRYELGTHYIPDIGGLDHSIPAAANGQFI 368 AED K +F G ++IPG+G Y + +PD+ + + AA+ G FI Sbjct: 56 AEDANKEIFSFINCPGGSVIPGVGLYRMMQAIVPDVNTICMGV-AASMGSFI 106
>BRO1_ASPFU (Q4X0Z5) Vacuolar protein-sorting protein bro1 (BRO| domain-containing protein 1) Length = 976 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Frame = +3 Query: 273 PGIGRYELGTHYIPDIGGLDHSIP----AAANGQFIPGADDTWVPNPGFEVPNPFRPGSD 440 PGI ++ H+ P + G H IP A GQ++ + PF+ G+ Sbjct: 806 PGIASPQMSPHFAPGVAGQQHGIPLSHSPAPYGQYVAPPSGV-----SYMQGQPFQQGAA 860 Query: 441 SP 446 +P Sbjct: 861 AP 862
>AMEL_TACAC (O97647) Amelogenin (Fragment)| Length = 121 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/55 (32%), Positives = 22/55 (40%) Frame = +2 Query: 272 PGDREVRTGHPLHPGHRRARPQHPGRRQRAVHPRGRRHLGAQPRLRGAQPFPPRL 436 PG + + P P HR +PQ P VHP P + QP PP L Sbjct: 62 PGQQPFQPQFPQKPTHRPIQPQAP------VHPMPPMPQPQLPPMFPLQPLPPLL 110
>PHAAB_RHIME (Q52978) Probable K(+)/H(+) antiporter subunit A/B (pH adaptation| potassium efflux system protein A/B) (Pha system subunit A/B) Length = 999 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = +3 Query: 246 TFQEGTALIPGIGRYELGTHYIPDIGGLDHSIPAAANGQFIPGADDTWVP 395 TF+ + GI +E GT I +GGL H +P A + A VP Sbjct: 363 TFKASLFMAAGIIDHESGTRDIRRLGGLFHFMPITATLAMVASAAMAGVP 412
>DNAA_STRCH (Q9ZH75) Chromosomal replication initiator protein dnaA| Length = 624 Score = 28.5 bits (62), Expect = 8.9 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +2 Query: 284 EVRTGHPLHPGHRRARP----QHPGRRQRAVHPRGRRHLGAQPRLRGAQPFP 427 + R+G P H G+ + RP Q G RQ H GR G+ P GAQP P Sbjct: 225 DYRSGPPEHQGYEQQRPDRQDQGQGPRQGG-HGPGRTG-GSVPGPMGAQPAP 274
>IF2_BACHD (Q9KA77) Translation initiation factor IF-2| Length = 730 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 6/45 (13%) Frame = +2 Query: 329 RPQHPGRRQRAVHP------RGRRHLGAQPRLRGAQPFPPRLRLS 445 +P+H G + + H R +R G QP + A+P P ++ S Sbjct: 110 KPKHKGNKNKKQHQKNNNNKRNQRGRGRQPEMNKAKPLPEKVTFS 154
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 3/40 (7%) Frame = +2 Query: 302 PLHPGHRRARPQHPGRRQRAVHPRG---RRHLGAQPRLRG 412 P P H A P HP + P R LG QP LRG Sbjct: 1018 PPQPHHHHAHPPHPPEMETGGSPDDPPPRLALGPQPSLRG 1057 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.301 0.113 0.330 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,521,434 Number of Sequences: 219361 Number of extensions: 1106066 Number of successful extensions: 2861 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 2673 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2833 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.8 bits)
