ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet98d12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloropla... 97 1e-20
2CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloropla... 95 4e-20
3CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloropl... 94 9e-20
4CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloropla... 91 8e-19
5CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloropl... 90 1e-18
6CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloropla... 88 5e-18
7CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast... 88 6e-18
8CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloropla... 88 6e-18
9CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloropl... 87 8e-18
10CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloropl... 87 1e-17
11CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast... 86 2e-17
12CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloropla... 86 2e-17
13CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast... 86 2e-17
14CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chl... 86 2e-17
15CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloropl... 86 2e-17
16CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloropl... 86 2e-17
17CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloropla... 86 3e-17
18CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast... 85 4e-17
19CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloropl... 84 7e-17
20CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chlorop... 84 9e-17
21CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast... 84 1e-16
22CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloropl... 84 1e-16
23CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chlorop... 84 1e-16
24CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloropl... 83 2e-16
25CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloropla... 83 2e-16
26CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloropl... 82 3e-16
27CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloropla... 82 5e-16
28CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloropla... 81 6e-16
29CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloropla... 81 6e-16
30CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloropl... 81 6e-16
31CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chlorop... 81 8e-16
32CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII typ... 80 1e-15
33CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast... 80 1e-15
34CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 membe... 77 9e-15
35CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 membe... 77 1e-14
36CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloropl... 76 3e-14
37CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chlorop... 66 2e-11
38CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII typ... 64 1e-10
39CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast... 64 1e-10
40CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloropl... 64 1e-10
41CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 membe... 63 2e-10
42CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast... 63 2e-10
43CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII ty... 62 4e-10
44CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloropla... 62 5e-10
45CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast ... 61 8e-10
46CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloropl... 61 8e-10
47CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloropl... 60 1e-09
48CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloropla... 60 1e-09
49CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloropla... 58 5e-09
50CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chlo... 57 9e-09
51CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type... 54 8e-08
52CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII typ... 53 2e-07
53CB2_MALDO (P15773) Chlorophyll a-b binding protein AB10, chlorop... 49 4e-06
54CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type... 47 1e-05
55CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type... 44 1e-04
56CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII typ... 44 1e-04
57CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloropl... 39 0.003
58CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloro... 37 0.010
59CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloropl... 35 0.064
60CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type... 28 7.8
61CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast... 28 7.8
62CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloropla... 28 7.8
63NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleo... 28 7.8
64RTP3_MOUSE (Q5QGU6) Receptor-transporting protein 3 (Transmembra... 28 7.8
65GLNA_TUBBO (Q86ZU6) Glutamine synthetase (EC 6.3.1.2) (Glutamate... 28 7.8 
>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 261

 Score = 97.1 bits (240), Expect = 1e-20
 Identities = 49/74 (66%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
 Frame = +3

Query: 72  MAATTMALSSPAMKLAGASYVLGGGRITMRXXXXXX--XXXXXPWYGPDRVLYLGPLSGE 245
           MAA TMALSSPA+    A+ V G GRITMR             PWYG DRVLYLGPLSGE
Sbjct: 1   MAAATMALSSPALAGKAAAKVFGEGRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGE 60

Query: 246 PPSYLSGEFPGDYG 287
           PPSYL+GEFPGDYG
Sbjct: 61  PPSYLTGEFPGDYG 74
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>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 266

 Score = 95.1 bits (235), Expect = 4e-20
 Identities = 50/78 (64%), Positives = 55/78 (70%), Gaps = 6/78 (7%)
 Frame = +3

Query: 72  MAATTMALSSPA-----MKLA-GASYVLGGGRITMRXXXXXXXXXXXPWYGPDRVLYLGP 233
           MAA+TMALSSPA     +KL+ GAS V G GR+TMR           PWYG DRV YLGP
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPGASEVFGTGRVTMRKTVKPTGPSGSPWYGSDRVKYLGP 60

Query: 234 LSGEPPSYLSGEFPGDYG 287
            SGEPPSYL+GEFPGDYG
Sbjct: 61  FSGEPPSYLTGEFPGDYG 78
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>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor|
           (LHCII type I CAB-1B) (LHCP)
          Length = 265

 Score = 94.0 bits (232), Expect = 9e-20
 Identities = 49/78 (62%), Positives = 53/78 (67%), Gaps = 6/78 (7%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXXXXXXPWYGPDRVLYLGP 233
           MAA TMALSSP     A+KL+  AS + G GRITMR           PWYGPDRV YLGP
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGP 60

Query: 234 LSGEPPSYLSGEFPGDYG 287
            SGE PSYL+GEFPGDYG
Sbjct: 61  FSGESPSYLTGEFPGDYG 78
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>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 265

 Score = 90.9 bits (224), Expect = 8e-19
 Identities = 48/78 (61%), Positives = 51/78 (65%), Gaps = 6/78 (7%)
 Frame = +3

Query: 72  MAATTMALSSPAMKLAG---ASYVLGGGRITMRXXXXX---XXXXXXPWYGPDRVLYLGP 233
           MAA TMALSSP M  A    +S + G  RITMR              PWYG DRVLYLGP
Sbjct: 1   MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGP 60

Query: 234 LSGEPPSYLSGEFPGDYG 287
           LSGEPPSYL+GEFPGDYG
Sbjct: 61  LSGEPPSYLTGEFPGDYG 78
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>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor|
           (LHCII type I CAB-21) (LHCP)
          Length = 265

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 46/78 (58%), Positives = 52/78 (66%), Gaps = 6/78 (7%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXXXXXXPWYGPDRVLYLGP 233
           MAA TMALSSP     A+KL+  A  + G GR++MR           PWYGPDRV YLGP
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGP 60

Query: 234 LSGEPPSYLSGEFPGDYG 287
            SGE PSYL+GEFPGDYG
Sbjct: 61  FSGESPSYLTGEFPGDYG 78
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>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor|
           (LHCII type I CAB-3) (LHCP)
          Length = 263

 Score = 88.2 bits (217), Expect = 5e-18
 Identities = 45/76 (59%), Positives = 52/76 (68%), Gaps = 5/76 (6%)
 Frame = +3

Query: 75  AATTMALSSPAMKLAGASYVLGG-----GRITMRXXXXXXXXXXXPWYGPDRVLYLGPLS 239
           AA++MALSSP+  LAG +  LG      GR++MR           PWYGPDRV YLGP S
Sbjct: 3   AASSMALSSPS--LAGKAVKLGPSAPEVGRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFS 60

Query: 240 GEPPSYLSGEFPGDYG 287
           GEPPSYL+GEFPGDYG
Sbjct: 61  GEPPSYLTGEFPGDYG 76
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>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 267

 Score = 87.8 bits (216), Expect = 6e-18
 Identities = 48/80 (60%), Positives = 54/80 (67%), Gaps = 8/80 (10%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLAG-ASYVLGGGRITMRXXXXX--XXXXXXPWYGPDRVLYL 227
           MA++TMALSSP     A+KL   AS ++G GRITMR             PWYGPDRV YL
Sbjct: 1   MASSTMALSSPSLAGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYL 60

Query: 228 GPLSGEPPSYLSGEFPGDYG 287
           GP SGE PSYL+GEFPGDYG
Sbjct: 61  GPFSGESPSYLTGEFPGDYG 80
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>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (CAB-140) (LHCP)
          Length = 267

 Score = 87.8 bits (216), Expect = 6e-18
 Identities = 49/79 (62%), Positives = 54/79 (68%), Gaps = 7/79 (8%)
 Frame = +3

Query: 72  MAATTMALSSPA-----MKLA-GASYVLGGGRITMRXXXXXXXX-XXXPWYGPDRVLYLG 230
           MAA+TMALSSPA     +KL+  AS VLG GR+TMR            PWYG DRV YLG
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 231 PLSGEPPSYLSGEFPGDYG 287
           P SGE PSYL+GEFPGDYG
Sbjct: 61  PFSGESPSYLTGEFPGDYG 79
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>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor|
           (LHCII type I CAB-40) (LHCP)
          Length = 267

 Score = 87.4 bits (215), Expect = 8e-18
 Identities = 46/80 (57%), Positives = 54/80 (67%), Gaps = 8/80 (10%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXXXXXX--PWYGPDRVLYL 227
           MAA+TMALSSP     A+KL+  +S + G G++TMR             PWYGPDRV YL
Sbjct: 1   MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYL 60

Query: 228 GPLSGEPPSYLSGEFPGDYG 287
           GP SGE PSYL+GEFPGDYG
Sbjct: 61  GPFSGESPSYLTGEFPGDYG 80
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>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor|
           (LHCII type I CAB-48) (LHCP)
          Length = 264

 Score = 86.7 bits (213), Expect = 1e-17
 Identities = 46/77 (59%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
 Frame = +3

Query: 72  MAATTMALSSPAM---KLAGASYVLGGGRITMRXXXXXX--XXXXXPWYGPDRVLYLGPL 236
           MAA TMA++S A+     AG   V G GRITMR             PWYG DRVLYLGPL
Sbjct: 1   MAAATMAITSRALVGKPAAGTRDVFGEGRITMRKTAAKPKPARSGSPWYGADRVLYLGPL 60

Query: 237 SGEPPSYLSGEFPGDYG 287
           SG PPSYL+GEFPGDYG
Sbjct: 61  SGSPPSYLTGEFPGDYG 77
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>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor|
           (Allergen Api g 3)
          Length = 264

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 46/78 (58%), Positives = 54/78 (69%), Gaps = 6/78 (7%)
 Frame = +3

Query: 72  MAATTMALSSPAM-----KLA-GASYVLGGGRITMRXXXXXXXXXXXPWYGPDRVLYLGP 233
           MAA+TMALSSPA+     K+A  +S + G GR++MR           PWYGPDRV YLGP
Sbjct: 1   MAASTMALSSPALAGKAVKVAPSSSELFGNGRVSMRKTVKAPVSDS-PWYGPDRVKYLGP 59

Query: 234 LSGEPPSYLSGEFPGDYG 287
            SGE PSYL+GEFPGDYG
Sbjct: 60  FSGEAPSYLTGEFPGDYG 77
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>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 262

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 47/77 (61%), Positives = 51/77 (66%), Gaps = 5/77 (6%)
 Frame = +3

Query: 72  MAATTMALSSPAMKLAGASYVLGG---GRITMRXXXXX--XXXXXXPWYGPDRVLYLGPL 236
           MAA+TMA+SS AM  AG    +G    GRITMR             PWYGPDRV YLGP 
Sbjct: 1   MAASTMAISSTAM--AGTPIKVGSFGEGRITMRKTVGKPKVAASGSPWYGPDRVKYLGPF 58

Query: 237 SGEPPSYLSGEFPGDYG 287
           SGEPPSYL+GEFPGDYG
Sbjct: 59  SGEPPSYLTGEFPGDYG 75
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>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 266

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 45/79 (56%), Positives = 52/79 (65%), Gaps = 7/79 (8%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLAGASYVLGGGRITMRXXXXXXX--XXXXPWYGPDRVLYLG 230
           MAATTM+LSS      A+K   +S ++G  R+ MR             PWYG DRVLYLG
Sbjct: 1   MAATTMSLSSSSFAGKAVKNLPSSALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLG 60

Query: 231 PLSGEPPSYLSGEFPGDYG 287
           PLSGEPPSYL+GEFPGDYG
Sbjct: 61  PLSGEPPSYLTGEFPGDYG 79
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>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast|
           precursor (LHCII type I CAB-165/180)
          Length = 267

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 47/79 (59%), Positives = 50/79 (63%), Gaps = 7/79 (8%)
 Frame = +3

Query: 72  MAATTMALSSPAMK------LAGASYVLGGGRITMRXXXXXXXX-XXXPWYGPDRVLYLG 230
           MAA+TMALSSPA           AS VLG GR+TMR            PWYG DRV YLG
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 231 PLSGEPPSYLSGEFPGDYG 287
           P SGE PSYL+GEFPGDYG
Sbjct: 61  PFSGESPSYLTGEFPGDYG 79
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>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor|
           (LHCII type I CAB-M9) (LHCP)
          Length = 265

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 45/78 (57%), Positives = 50/78 (64%), Gaps = 6/78 (7%)
 Frame = +3

Query: 72  MAATTMALSSPAMKLAGA---SYVLGGGRITMRXXXXXX---XXXXXPWYGPDRVLYLGP 233
           MA++TMALSS A         S + G  R+TMR              PWYGPDRVLYLGP
Sbjct: 1   MASSTMALSSTAFAGKAVNVPSSLFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGP 60

Query: 234 LSGEPPSYLSGEFPGDYG 287
           LSGEPPSYL+GEFPGDYG
Sbjct: 61  LSGEPPSYLTGEFPGDYG 78
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>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor|
           (LHCII type I CAB-16) (LHCP)
          Length = 266

 Score = 85.9 bits (211), Expect = 2e-17
 Identities = 46/79 (58%), Positives = 53/79 (67%), Gaps = 7/79 (8%)
 Frame = +3

Query: 72  MAATTMALSSP----AMKLA-GASYVLGGGRITMRXXXXXXX--XXXXPWYGPDRVLYLG 230
           MAA+T ALSSP    A+KL+  +S V G G++TMR             PWYGPDRV YLG
Sbjct: 1   MAASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLG 60

Query: 231 PLSGEPPSYLSGEFPGDYG 287
           P SGE PSYL+GEFPGDYG
Sbjct: 61  PFSGESPSYLTGEFPGDYG 79
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>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor|
           (LHCII type I CAB-E) (LHCP)
          Length = 266

 Score = 85.5 bits (210), Expect = 3e-17
 Identities = 46/79 (58%), Positives = 53/79 (67%), Gaps = 7/79 (8%)
 Frame = +3

Query: 72  MAATTMALSSP----AMKLA-GASYVLGGGRITMRXXXXXXX--XXXXPWYGPDRVLYLG 230
           MAA+T ALSSP    A+KL+  +S V G G++TMR             PWYGPDRV YLG
Sbjct: 1   MAASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLG 60

Query: 231 PLSGEPPSYLSGEFPGDYG 287
           P SGE PSYL+GEFPGDYG
Sbjct: 61  PFSGESPSYLTGEFPGDYG 79
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>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 265

 Score = 85.1 bits (209), Expect = 4e-17
 Identities = 45/78 (57%), Positives = 49/78 (62%), Gaps = 6/78 (7%)
 Frame = +3

Query: 72  MAATTMALSSPAMKLAGA---SYVLGGGRITMRXXXXXX---XXXXXPWYGPDRVLYLGP 233
           MA++TMALSS A         S   G  R+TMR              PWYGPDRVLYLGP
Sbjct: 1   MASSTMALSSTAFAGKAVNVPSSSFGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGP 60

Query: 234 LSGEPPSYLSGEFPGDYG 287
           LSGEPPSYL+GEFPGDYG
Sbjct: 61  LSGEPPSYLTGEFPGDYG 78
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>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor|
           (LHCII type I CAB-3C) (LHCP)
          Length = 267

 Score = 84.3 bits (207), Expect = 7e-17
 Identities = 45/80 (56%), Positives = 52/80 (65%), Gaps = 8/80 (10%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXX--XXXXXPWYGPDRVLYL 227
           MA +TMALSS      A+KL+  +S + G GR+TMR             PWYGPDRV YL
Sbjct: 1   MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYL 60

Query: 228 GPLSGEPPSYLSGEFPGDYG 287
           GP SGE PSYL+GEFPGDYG
Sbjct: 61  GPFSGESPSYLTGEFPGDYG 80
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>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor|
           (LHCII type I CAB-22R) (LHCP)
          Length = 267

 Score = 84.0 bits (206), Expect = 9e-17
 Identities = 45/80 (56%), Positives = 52/80 (65%), Gaps = 8/80 (10%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLAGASY-VLGGGRITMRXXXXXX--XXXXXPWYGPDRVLYL 227
           MAATTMALSS      A+KL+ +S  + G G++TMR             PWYGPDRV YL
Sbjct: 1   MAATTMALSSSSFAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYL 60

Query: 228 GPLSGEPPSYLSGEFPGDYG 287
           GP SGE PSYL+GEFP DYG
Sbjct: 61  GPFSGEAPSYLTGEFPSDYG 80
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>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCII type I CAB-8)
          Length = 268

 Score = 83.6 bits (205), Expect = 1e-16
 Identities = 44/81 (54%), Positives = 49/81 (60%), Gaps = 9/81 (11%)
 Frame = +3

Query: 72  MAATTMALSSPAM-------KLAGASYVLGGGRITMRXXXXXX--XXXXXPWYGPDRVLY 224
           MAA++MALSSP +           +S  LGG R TMR             PWYGPDRV Y
Sbjct: 1   MAASSMALSSPTLTGKPVETSANPSSQELGGARFTMRKSATTKKVASSGSPWYGPDRVKY 60

Query: 225 LGPLSGEPPSYLSGEFPGDYG 287
           LGP SGE PSYL+GEFPGDYG
Sbjct: 61  LGPFSGESPSYLTGEFPGDYG 81
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>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor|
           (LHCII type I CAB-50) (LHCP)
          Length = 267

 Score = 83.6 bits (205), Expect = 1e-16
 Identities = 45/80 (56%), Positives = 52/80 (65%), Gaps = 8/80 (10%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXX--XXXXPWYGPDRVLYL 227
           MAA TMALSS      A+KL+  +S + G G++TMR             PWYGPDRV YL
Sbjct: 1   MAAATMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYL 60

Query: 228 GPLSGEPPSYLSGEFPGDYG 287
           GP SGE PSYL+GEFPGDYG
Sbjct: 61  GPFSGESPSYLTGEFPGDYG 80
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>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor|
           (LHCII type I CAB-91R) (LHCP)
          Length = 267

 Score = 83.6 bits (205), Expect = 1e-16
 Identities = 45/80 (56%), Positives = 51/80 (63%), Gaps = 8/80 (10%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXX--XXXXPWYGPDRVLYL 227
           MAA TMALSSP     A+K +  +S + G G+ TMR             PWYGPDRV YL
Sbjct: 1   MAAATMALSSPSFAGKAVKFSPSSSEITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYL 60

Query: 228 GPLSGEPPSYLSGEFPGDYG 287
           GP SGE PSYL+GEFPGDYG
Sbjct: 61  GPFSGEAPSYLTGEFPGDYG 80
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>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast|
           precursor (LHCII type I CAB-AB80) (LHCP)
          Length = 269

 Score = 82.8 bits (203), Expect = 2e-16
 Identities = 43/80 (53%), Positives = 50/80 (62%), Gaps = 7/80 (8%)
 Frame = +3

Query: 69  AMAATTMALSSPAM-----KLAGASYVLGGGRITMRXXXXXX--XXXXXPWYGPDRVLYL 227
           A ++++MALSSP +     KL  +S  LG  R TMR             PWYGPDRV YL
Sbjct: 3   ASSSSSMALSSPTLAGKQLKLNPSSQELGAARFTMRKSATTKKVASSGSPWYGPDRVKYL 62

Query: 228 GPLSGEPPSYLSGEFPGDYG 287
           GP SGE PSYL+GEFPGDYG
Sbjct: 63  GPFSGESPSYLTGEFPGDYG 82
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>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor|
           (LHCII type I CAB-C) (LHCP)
          Length = 267

 Score = 82.8 bits (203), Expect = 2e-16
 Identities = 44/80 (55%), Positives = 53/80 (66%), Gaps = 8/80 (10%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXX--XXXXPWYGPDRVLYL 227
           MAA+TMALSS      A+KL+  +S + G G++TMR             PWYGP+RV YL
Sbjct: 1   MAASTMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYL 60

Query: 228 GPLSGEPPSYLSGEFPGDYG 287
           GP SGE PSYL+GEFPGDYG
Sbjct: 61  GPFSGESPSYLTGEFPGDYG 80
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>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor|
           (LHCII type I CAB-25) (LHCP)
          Length = 266

 Score = 82.4 bits (202), Expect = 3e-16
 Identities = 42/79 (53%), Positives = 49/79 (62%), Gaps = 7/79 (8%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLAGASYVLGGGRITMRXXXXXXX--XXXXPWYGPDRVLYLG 230
           MAA TMA+SS      A+ +  +S + G G+ TMR             PWYGPDRV YLG
Sbjct: 1   MAAATMAISSSSFAGKAVNVPSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLG 60

Query: 231 PLSGEPPSYLSGEFPGDYG 287
           P SGE PSYL+GEFPGDYG
Sbjct: 61  PFSGEAPSYLTGEFPGDYG 79
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>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCII type I CAB-7) (LHCP)
          Length = 267

 Score = 81.6 bits (200), Expect = 5e-16
 Identities = 44/80 (55%), Positives = 51/80 (63%), Gaps = 8/80 (10%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXX--XXXXPWYGPDRVLYL 227
           M A+TMALSSP     A+KL+  +S + G G+  MR             PWYGPDRV YL
Sbjct: 1   MTASTMALSSPSFAGNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYL 60

Query: 228 GPLSGEPPSYLSGEFPGDYG 287
           GP SGE PSYL+GEFPGDYG
Sbjct: 61  GPFSGEAPSYLTGEFPGDYG 80
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>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 256

 Score = 81.3 bits (199), Expect = 6e-16
 Identities = 43/74 (58%), Positives = 49/74 (66%), Gaps = 5/74 (6%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLAGASYVLGGGRITMRXXXXXXXXXXXPWYGPDRVLYLGPL 236
           MAA+TMALSS      AMKLA ++  LG GR++MR           PWYGPDRV YLGP 
Sbjct: 1   MAASTMALSSSSLAGQAMKLAPSTPELGVGRVSMRKTAPKTVSSGSPWYGPDRVKYLGPF 60

Query: 237 SGEPPSYLSGEFPG 278
           SGE PSYL+GEF G
Sbjct: 61  SGEAPSYLTGEFHG 74
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>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 264

 Score = 81.3 bits (199), Expect = 6e-16
 Identities = 43/78 (55%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
 Frame = +3

Query: 72  MAATTMALSSPAM------KLAGASYVLGGGRITMRXXXXXXXXXXXPWYGPDRVLYLGP 233
           MAA TMALSS          L+ +S V G  R++MR           PWYGPDRV YLGP
Sbjct: 1   MAAATMALSSSTFAGKAVKNLSSSSEVQGDARVSMRKTAATKKVGS-PWYGPDRVKYLGP 59

Query: 234 LSGEPPSYLSGEFPGDYG 287
            SGE PSYL+GEFPGDYG
Sbjct: 60  FSGESPSYLTGEFPGDYG 77
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>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type I CAB-13) (LHCP)
          Length = 266

 Score = 81.3 bits (199), Expect = 6e-16
 Identities = 42/79 (53%), Positives = 49/79 (62%), Gaps = 7/79 (8%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLAGASYVLGGGRITMRXXXXXXX--XXXXPWYGPDRVLYLG 230
           MAA TMALSS      A+ +  +S +   G++TMR             PWYGPDRV YLG
Sbjct: 1   MAAATMALSSSSFAGKAVNVPSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKYLG 60

Query: 231 PLSGEPPSYLSGEFPGDYG 287
           P SGE PSYL+GEFPGDYG
Sbjct: 61  PFSGEAPSYLTGEFPGDYG 79
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>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor|
           (LHCII type I CAB-22L) (LHCP)
          Length = 267

 Score = 80.9 bits (198), Expect = 8e-16
 Identities = 44/80 (55%), Positives = 50/80 (62%), Gaps = 8/80 (10%)
 Frame = +3

Query: 72  MAATTMALSSPA-----MKLA-GASYVLGGGRITMRXXXXXXX--XXXXPWYGPDRVLYL 227
           MAA TMALSS       +KL+  +S + G G+ TMR             PWYGPDRV YL
Sbjct: 1   MAAATMALSSSTFAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYL 60

Query: 228 GPLSGEPPSYLSGEFPGDYG 287
           GP SGE PSYL+GEFPGDYG
Sbjct: 61  GPFSGEAPSYLTGEFPGDYG 80
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>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP) (Fragment)
          Length = 255

 Score = 80.5 bits (197), Expect = 1e-15
 Identities = 37/66 (56%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
 Frame = +3

Query: 93  LSSPAMKLA-GASYVLGGGRITMRXXXXXXXXXXXPWYGPDRVLYLGPLSGEPPSYLSGE 269
           L+  A+KL+  A  + G  + TMR           PWYGPDRV YLGP SGEPPSYL+GE
Sbjct: 3   LAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGE 62

Query: 270 FPGDYG 287
           FPGDYG
Sbjct: 63  FPGDYG 68
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>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 245

 Score = 80.5 bits (197), Expect = 1e-15
 Identities = 34/51 (66%), Positives = 37/51 (72%)
 Frame = +3

Query: 135 LGGGRITMRXXXXXXXXXXXPWYGPDRVLYLGPLSGEPPSYLSGEFPGDYG 287
           LG GR++MR           PWYGPDRV YLGP SGEPPSYL+GEFPGDYG
Sbjct: 8   LGVGRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYG 58
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>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1B) (CAB) (LHCP)
          Length = 274

 Score = 77.4 bits (189), Expect = 9e-15
 Identities = 41/84 (48%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
 Frame = +3

Query: 51  CSIRQQAMAATTMALSSPAMK--LAGASYVLGGGRITMRXXXX---XXXXXXXPWYGPDR 215
           C I   A A   ++   P     L   + V G  R+TMR              PWYGPDR
Sbjct: 4   CGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDR 63

Query: 216 VLYLGPLSGEPPSYLSGEFPGDYG 287
           VLYLGP SGEPPSYL+GEFPGDYG
Sbjct: 64  VLYLGPFSGEPPSYLTGEFPGDYG 87
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>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1A) (CAB) (LHCP)
          Length = 278

 Score = 76.6 bits (187), Expect = 1e-14
 Identities = 36/62 (58%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
 Frame = +3

Query: 111 KLAGASYVLGGGRITMRXXX---XXXXXXXXPWYGPDRVLYLGPLSGEPPSYLSGEFPGD 281
           +L G     G  R+TMR              PWYGPDRVLYLGP SGEPPSYL+GEFPGD
Sbjct: 30  QLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGD 89

Query: 282 YG 287
           YG
Sbjct: 90  YG 91
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>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor|
           (LHCII type II CAB-1A) (LHCP)
          Length = 278

 Score = 75.9 bits (185), Expect = 3e-14
 Identities = 35/62 (56%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
 Frame = +3

Query: 111 KLAGASYVLGGGRITMRXXX---XXXXXXXXPWYGPDRVLYLGPLSGEPPSYLSGEFPGD 281
           +L G     G  R+TMR              PWYGPDRV+YLGP SGEPPSYL+GEFPGD
Sbjct: 30  QLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGD 89

Query: 282 YG 287
           YG
Sbjct: 90  YG 91
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>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor|
           (LHCII type II CAB-151) (LHCP)
          Length = 265

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 37/79 (46%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
 Frame = +3

Query: 54  SIRQQAMAA-TTMALSSPAMKLAGASYVLGGGRITMRXXXXXXXXXXXPWYGPDRVLYLG 230
           +I+Q A A  T +  S+  +   GA   +GGGR++MR            WYGPDR  YLG
Sbjct: 5   AIQQSAFAGQTALKQSNELVCKIGA---VGGGRVSMRRTVKSAPTSI--WYGPDRPKYLG 59

Query: 231 PLSGEPPSYLSGEFPGDYG 287
           P S + PSYL+GEFPGDYG
Sbjct: 60  PFSDQIPSYLTGEFPGDYG 78
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>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,|
           chloroplast precursor (CAB)
          Length = 268

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 39/92 (42%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
 Frame = +3

Query: 36  ISSLLCSIRQQAMAATTMALS--------SPAMKLAGASYVLGGGRITMRXXXXXXXXXX 191
           ++S + +   +A+ A T  LS        SP   +A A+     GRITM           
Sbjct: 1   MASTIMAAASRAVVAKTPFLSGQGRAASASPLRDIAAAT----NGRITMGNDL------- 49

Query: 192 XPWYGPDRVLYLGPLSGEPPSYLSGEFPGDYG 287
             WYGPDRV YLGP S + PSYL+GEFPGDYG
Sbjct: 50  --WYGPDRVKYLGPFSAQTPSYLNGEFPGDYG 79
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>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 263

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 30/49 (61%), Positives = 32/49 (65%)
 Frame = +3

Query: 141 GGRITMRXXXXXXXXXXXPWYGPDRVLYLGPLSGEPPSYLSGEFPGDYG 287
           GGRITMR            WYGPDR  YLGP S + PSYL+GEFPGDYG
Sbjct: 30  GGRITMRRTVKSAPQSI--WYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 76
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>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor|
           (LHCII type I CAB-37) (LHCP)
          Length = 265

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 36/78 (46%), Positives = 42/78 (53%)
 Frame = +3

Query: 54  SIRQQAMAATTMALSSPAMKLAGASYVLGGGRITMRXXXXXXXXXXXPWYGPDRVLYLGP 233
           +I+Q A A  T   S   +     S+  GGGR TMR            WYG DR  YLGP
Sbjct: 5   AIQQSAFAGQTALKSQNELVRKIGSF--GGGRATMRRTVKSAPQSI--WYGEDRPKYLGP 60

Query: 234 LSGEPPSYLSGEFPGDYG 287
            S + PSYL+GEFPGDYG
Sbjct: 61  FSEQTPSYLTGEFPGDYG 78
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>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,|
           chloroplast precursor (DE Chlorophyll a-b binding
           protein type I F3) (CAB-F3) (LHCP)
          Length = 265

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 26/30 (86%), Positives = 26/30 (86%)
 Frame = +3

Query: 198 WYGPDRVLYLGPLSGEPPSYLSGEFPGDYG 287
           WYG DR LYLGP SG PPSYLSGEFPGDYG
Sbjct: 49  WYGSDRPLYLGPFSGSPPSYLSGEFPGDYG 78
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>CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 205

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
 Frame = +3

Query: 54  SIRQQAMAATTMALSSPAM--KLAGASYVLGGGRITMRXXXXXXXXXXXPWYGPDRVLYL 227
           +I+Q A A  T+      +  K+ G      GGR++MR            WYGPDR  YL
Sbjct: 5   TIQQSAFAGQTLLKPQNELVRKVGG-----NGGRVSMRRTIKSAPESI--WYGPDRPKYL 57

Query: 228 GPLSGEPPSYLSGEFPGDYG 287
           GP S + PSYL+GEFPGDYG
Sbjct: 58  GPFSEQTPSYLTGEFPGDYG 77
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>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I|
           CAB-AB96) (LHCP) (Major 15) (Fragment)
          Length = 228

 Score = 62.0 bits (149), Expect = 4e-10
 Identities = 25/31 (80%), Positives = 27/31 (87%)
 Frame = +3

Query: 195 PWYGPDRVLYLGPLSGEPPSYLSGEFPGDYG 287
           PW+GPD V YLGP SGE PSYL+GEFPGDYG
Sbjct: 11  PWHGPDGVKYLGPFSGESPSYLTGEFPGDYG 41
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>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor|
           (LHCII type I CAB-4) (LHCP)
          Length = 265

 Score = 61.6 bits (148), Expect = 5e-10
 Identities = 34/79 (43%), Positives = 41/79 (51%)
 Frame = +3

Query: 51  CSIRQQAMAATTMALSSPAMKLAGASYVLGGGRITMRXXXXXXXXXXXPWYGPDRVLYLG 230
           C+I+Q A     +  S         ++  G GRITMR            WYG DR  YLG
Sbjct: 4   CAIQQSAFVGQAVGKSQNEFIRKVGNF--GEGRITMRRTVKSAPQSI--WYGEDRPKYLG 59

Query: 231 PLSGEPPSYLSGEFPGDYG 287
           P S + PSYL+GEFPGDYG
Sbjct: 60  PFSEQTPSYLTGEFPGDYG 78
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>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 269

 Score = 60.8 bits (146), Expect = 8e-10
 Identities = 36/78 (46%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
 Frame = +3

Query: 69  AMAATTMA---LSSPAMKLAGASYVLGG--GRITMRXXXXXXXXXXXPWYGPDRVLYLGP 233
           AM +T +A   L  P  +L+    VLG    R+TMR            WYG DR  +LGP
Sbjct: 6   AMHSTALAGQSLVKPVNELSRK--VLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGP 63

Query: 234 LSGEPPSYLSGEFPGDYG 287
            SGE PSYL+GEF GDYG
Sbjct: 64  FSGETPSYLNGEFAGDYG 81
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>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor|
           (LHCII type I CAB-36) (LHCP)
          Length = 265

 Score = 60.8 bits (146), Expect = 8e-10
 Identities = 35/78 (44%), Positives = 40/78 (51%)
 Frame = +3

Query: 54  SIRQQAMAATTMALSSPAMKLAGASYVLGGGRITMRXXXXXXXXXXXPWYGPDRVLYLGP 233
           +I Q A A  T   S   +     S+   GGR TMR            WYG DR  YLGP
Sbjct: 5   AIEQSAFAGQTALKSQNELVRKIGSF--NGGRATMRRTVKSAPQSI--WYGEDRPKYLGP 60

Query: 234 LSGEPPSYLSGEFPGDYG 287
            S + PSYL+GEFPGDYG
Sbjct: 61  FSEQTPSYLTGEFPGDYG 78
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>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type III CAB-13)
          Length = 265

 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 24/30 (80%), Positives = 26/30 (86%)
 Frame = +3

Query: 198 WYGPDRVLYLGPLSGEPPSYLSGEFPGDYG 287
           WYGPDRV YLGP S + PSYL+GEFPGDYG
Sbjct: 47  WYGPDRVKYLGPFSAQTPSYLNGEFPGDYG 76
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>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast precursor|
           (LHCII type I CAB-5) (LHCP) (Fragment)
          Length = 237

 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 28/49 (57%), Positives = 31/49 (63%)
 Frame = +3

Query: 141 GGRITMRXXXXXXXXXXXPWYGPDRVLYLGPLSGEPPSYLSGEFPGDYG 287
           GGR+TMR            WYG DR  YLGP S + PSYL+GEFPGDYG
Sbjct: 4   GGRVTMRRTVKSAPQSI--WYGEDRPKYLGPFSEQTPSYLTGEFPGDYG 50
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>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor|
           (LHCII type II CAB-215) (LHCP)
          Length = 265

 Score = 58.2 bits (139), Expect = 5e-09
 Identities = 28/50 (56%), Positives = 30/50 (60%)
 Frame = +3

Query: 138 GGGRITMRXXXXXXXXXXXPWYGPDRVLYLGPLSGEPPSYLSGEFPGDYG 287
           G  R TMR            WYGPDR  YLGP S + PSYL+GEFPGDYG
Sbjct: 31  GQARFTMRRTVKSAPESI--WYGPDRPKYLGPFSEQIPSYLTGEFPGDYG 78
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>CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chloroplast|
           precursor (CAB) (LHCP)
          Length = 266

 Score = 57.4 bits (137), Expect = 9e-09
 Identities = 28/47 (59%), Positives = 29/47 (61%)
 Frame = +3

Query: 147 RITMRXXXXXXXXXXXPWYGPDRVLYLGPLSGEPPSYLSGEFPGDYG 287
           RITMR            WYGPDR  YLGP S   PSYL+GEFPGDYG
Sbjct: 35  RITMRRTVRSAPESI--WYGPDRPKYLGPFSEGTPSYLTGEFPGDYG 79
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>CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 256

 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 21/30 (70%), Positives = 24/30 (80%)
 Frame = +3

Query: 198 WYGPDRVLYLGPLSGEPPSYLSGEFPGDYG 287
           WYGPDR  +LGP S   P+YL+GEFPGDYG
Sbjct: 39  WYGPDRAKWLGPFSTNTPAYLTGEFPGDYG 68
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>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 264

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 25/48 (52%), Positives = 29/48 (60%)
 Frame = +3

Query: 144 GRITMRXXXXXXXXXXXPWYGPDRVLYLGPLSGEPPSYLSGEFPGDYG 287
           GR +MR            WYG DR  +LGP S + PSYL+GEFPGDYG
Sbjct: 32  GRFSMRRTVKAVPQSI--WYGADRPKFLGPFSEQTPSYLTGEFPGDYG 77
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>CB2_MALDO (P15773) Chlorophyll a-b binding protein AB10, chloroplast|
           precursor (LHCII type I CAB-AB10) (LHCP)
          Length = 268

 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 21/25 (84%), Positives = 22/25 (88%)
 Frame = +3

Query: 213 RVLYLGPLSGEPPSYLSGEFPGDYG 287
           RV YLGP SGE PSYL+GEFPGDYG
Sbjct: 58  RVKYLGPFSGEWPSYLTGEFPGDYG 82
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>CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 253

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 20/31 (64%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
 Frame = +3

Query: 198 WYGPDRVLYLGPLS-GEPPSYLSGEFPGDYG 287
           +YGPDR  +LGP S  + P YL+GEFPGDYG
Sbjct: 33  FYGPDRAKFLGPFSENDTPEYLTGEFPGDYG 63
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>CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 253

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 19/31 (61%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
 Frame = +3

Query: 198 WYGPDRVLYLGPLS-GEPPSYLSGEFPGDYG 287
           +YGP+R  +LGP S    P+YL+GEFPGDYG
Sbjct: 36  FYGPNRAKWLGPYSENATPAYLTGEFPGDYG 66
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>CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII type 1|
           (Chlorophyll a-b binding protein of LHCII type I) (CAB)
           (LHCP) (Fragment)
          Length = 206

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 231 PLSGEPPSYLSGEFPGDYG 287
           P SGEPPSYL+GEFPGDYG
Sbjct: 1   PFSGEPPSYLTGEFPGDYG 19
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>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast precursor|
           (LHCII type I CAB-1C) (LHCP) (Fragments)
          Length = 265

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 24/49 (48%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXXXXXXPW 200
           MAA TMALSSP     A+KL+  AS + G GRITMR           PW
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPW 49
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>CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloroplast|
           precursor (Light-harvesting complex II protein 5)
           (LHCB5) (LHCIIc)
          Length = 280

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 19/33 (57%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = +3

Query: 198 WYGPDRVLYL--GPLS-GEPPSYLSGEFPGDYG 287
           WYGPDR ++L  G L   E P YL+GE  GDYG
Sbjct: 62  WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYG 94
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>CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloroplast precursor|
           (LHCII type I CAB-1A) (LHCP) (Fragments)
          Length = 265

 Score = 34.7 bits (78), Expect = 0.064
 Identities = 23/49 (46%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXXXXXXPW 200
           MAA  MALSSP     A+KL+  AS   G GRITMR           PW
Sbjct: 1   MAAAAMALSSPSFAGQAVKLSPSASENSGNGRITMRKAVAKSAPSSSPW 49
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>CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 273

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 198 WYGPDRVLYLGPLSGEPPSYLSGEFPGDYG 287
           +YGPD       L  + P   +GEFPGDYG
Sbjct: 57  FYGPDATSGWD-LQHQHPRLPTGEFPGDYG 85
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>CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCI type II CAB)
          Length = 270

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 207 PDRVLYLGPLSGEPPSYLSGEFPGDYG 287
           PDR L+       PP +L G  PGD+G
Sbjct: 63  PDRPLWFP--GSTPPEWLDGSLPGDFG 87
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>CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCI type II CAB-7)
          Length = 270

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
 Frame = +3

Query: 87  MALSSPAMKLAGA------SYVLGGGRITMRXXXXXXXXXXXPWY----GPDRVLYLGPL 236
           +A SSP+ +  G+      +  LGG R+ +                    PDR L+    
Sbjct: 13  VAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFP-- 70

Query: 237 SGEPPSYLSGEFPGDYG 287
              PP +L G  PGD+G
Sbjct: 71  GSTPPPWLDGSLPGDFG 87
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>NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)|
           (214 kDa nucleoporin) (CAN protein)
          Length = 2090

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = +3

Query: 69  AMAATTMALSSPAMKLAGASYVLGGGRITMRXXXXXXXXXXXPWYGPDRVLYLGPLSGEP 248
           A A  ++  SSPA  +A  S +  GG  T+              +G   +     ++GEP
Sbjct: 452 AAAPASLPPSSPAAPIATFSLLPAGGAPTVFS------------FGSSSLKSSATVTGEP 499

Query: 249 PSYLSG 266
           PSY SG
Sbjct: 500 PSYSSG 505
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>RTP3_MOUSE (Q5QGU6) Receptor-transporting protein 3 (Transmembrane protein 7)|
          Length = 474

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 16/61 (26%)
 Frame = -3

Query: 145 PPPRTYEAPASFIAGEESAMVVAAIAC---------CRME-------QSKLLMCGCCCD* 14
           PP  +Y  P S      S+ V+  I+          C++E       QS+   CG CC+ 
Sbjct: 377 PPTSSYVPPTSSYVPPTSSSVIVPISSSWRLPENTICQVERNSHIHPQSQSSCCGACCES 436

Query: 13  W 11
           W
Sbjct: 437 W 437
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>GLNA_TUBBO (Q86ZU6) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia|
           ligase) (GS)
          Length = 358

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 195 PWYGPDRVLYLGPLSGEPPSYLSGEFPGDYG 287
           PW+G ++   L  L G P  +  G FPG  G
Sbjct: 128 PWFGLEQEYTLFDLYGNPYGWPKGGFPGPQG 158


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.309    0.131    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,783,404
Number of Sequences: 219361
Number of extensions: 363544
Number of successful extensions: 804
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 80,573,946
effective HSP length: 71
effective length of database: 64,999,315
effective search space used: 1559983560
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
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