ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet98d10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469996.1| Oryza sativa (japonica cultivar-group), mRNA Length = 588 Score = 123 bits (62), Expect = 3e-25 Identities = 68/70 (97%) Strand = Plus / Plus Query: 221 ggacttcgcggcggacaaggcggagtgcgtggacaagctgatggggctggcgacgtgcct 280 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 75 ggacttcgcggcggacaaggcggagtgcgcggacaagctgatggcgctggcgacgtgcct 134 Query: 281 gacgtacgtg 290 |||||||||| Sbjct: 135 gacgtacgtg 144
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 123 bits (62), Expect = 3e-25 Identities = 68/70 (97%) Strand = Plus / Plus Query: 221 ggacttcgcggcggacaaggcggagtgcgtggacaagctgatggggctggcgacgtgcct 280 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 33259929 ggacttcgcggcggacaaggcggagtgcgcggacaagctgatggcgctggcgacgtgcct 33259988 Query: 281 gacgtacgtg 290 |||||||||| Sbjct: 33259989 gacgtacgtg 33259998 Score = 63.9 bits (32), Expect = 3e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 231 gcggacaaggcggagtgcgtggacaagctgatggggctggcgacgtgcctgacgtacgtg 290 ||||||| | ||||||||| |||| ||||| ||||||||||| |||||||| ||||||| Sbjct: 3608175 gcggacaggacggagtgcgcggaccagctggtggggctggcgccgtgcctgcagtacgtg 3608234 Query: 291 cagg 294 |||| Sbjct: 3608235 cagg 3608238
>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete sequence Length = 122815 Score = 123 bits (62), Expect = 3e-25 Identities = 68/70 (97%) Strand = Plus / Plus Query: 221 ggacttcgcggcggacaaggcggagtgcgtggacaagctgatggggctggcgacgtgcct 280 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 16445 ggacttcgcggcggacaaggcggagtgcgcggacaagctgatggcgctggcgacgtgcct 16504 Query: 281 gacgtacgtg 290 |||||||||| Sbjct: 16505 gacgtacgtg 16514
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 123 bits (62), Expect = 3e-25 Identities = 68/70 (97%) Strand = Plus / Plus Query: 221 ggacttcgcggcggacaaggcggagtgcgtggacaagctgatggggctggcgacgtgcct 280 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 33350439 ggacttcgcggcggacaaggcggagtgcgcggacaagctgatggcgctggcgacgtgcct 33350498 Query: 281 gacgtacgtg 290 |||||||||| Sbjct: 33350499 gacgtacgtg 33350508 Score = 63.9 bits (32), Expect = 3e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 231 gcggacaaggcggagtgcgtggacaagctgatggggctggcgacgtgcctgacgtacgtg 290 ||||||| | ||||||||| |||| ||||| ||||||||||| |||||||| ||||||| Sbjct: 3608286 gcggacaggacggagtgcgcggaccagctggtggggctggcgccgtgcctgcagtacgtg 3608345 Query: 291 cagg 294 |||| Sbjct: 3608346 cagg 3608349
>ref|XM_506217.1| PREDICTED Oryza sativa (japonica cultivar-group), P0417F02.20 mRNA Length = 865 Score = 99.6 bits (50), Expect = 5e-18 Identities = 65/70 (92%) Strand = Plus / Plus Query: 225 ttcgcggcggacaaggcggagtgcgtggacaagctgatggggctggcgacgtgcctgacg 284 ||||||||||||| ||||||||||| |||||||||||||| |||| |||||||||||||| Sbjct: 119 ttcgcggcggacagggcggagtgcgcggacaagctgatggcgctgtcgacgtgcctgacg 178 Query: 285 tacgtgcagg 294 | |||||||| Sbjct: 179 ttcgtgcagg 188
>ref|XM_477009.1| Oryza sativa (japonica cultivar-group), mRNA Length = 861 Score = 99.6 bits (50), Expect = 5e-18 Identities = 65/70 (92%) Strand = Plus / Plus Query: 225 ttcgcggcggacaaggcggagtgcgtggacaagctgatggggctggcgacgtgcctgacg 284 ||||||||||||| ||||||||||| |||||||||||||| |||| |||||||||||||| Sbjct: 129 ttcgcggcggacagggcggagtgcgcggacaagctgatggcgctgtcgacgtgcctgacg 188 Query: 285 tacgtgcagg 294 | |||||||| Sbjct: 189 ttcgtgcagg 198
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 99.6 bits (50), Expect = 5e-18 Identities = 65/70 (92%) Strand = Plus / Plus Query: 225 ttcgcggcggacaaggcggagtgcgtggacaagctgatggggctggcgacgtgcctgacg 284 ||||||||||||| ||||||||||| |||||||||||||| |||| |||||||||||||| Sbjct: 5346107 ttcgcggcggacagggcggagtgcgcggacaagctgatggcgctgtcgacgtgcctgacg 5346166 Query: 285 tacgtgcagg 294 | |||||||| Sbjct: 5346167 ttcgtgcagg 5346176 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 181 tgatggcggtggcggctgtgatggt 205 ||||||||||||||| ||||||||| Sbjct: 13276918 tgatggcggtggcgggtgtgatggt 13276942
>dbj|AP005257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0417F02 Length = 150660 Score = 99.6 bits (50), Expect = 5e-18 Identities = 65/70 (92%) Strand = Plus / Plus Query: 225 ttcgcggcggacaaggcggagtgcgtggacaagctgatggggctggcgacgtgcctgacg 284 ||||||||||||| ||||||||||| |||||||||||||| |||| |||||||||||||| Sbjct: 80471 ttcgcggcggacagggcggagtgcgcggacaagctgatggcgctgtcgacgtgcctgacg 80530 Query: 285 tacgtgcagg 294 | |||||||| Sbjct: 80531 ttcgtgcagg 80540
>dbj|AK071830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023117F24, full insert sequence Length = 861 Score = 99.6 bits (50), Expect = 5e-18 Identities = 65/70 (92%) Strand = Plus / Plus Query: 225 ttcgcggcggacaaggcggagtgcgtggacaagctgatggggctggcgacgtgcctgacg 284 ||||||||||||| ||||||||||| |||||||||||||| |||| |||||||||||||| Sbjct: 129 ttcgcggcggacagggcggagtgcgcggacaagctgatggcgctgtcgacgtgcctgacg 188 Query: 285 tacgtgcagg 294 | |||||||| Sbjct: 189 ttcgtgcagg 198
>dbj|AK060951.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-F08, full insert sequence Length = 865 Score = 99.6 bits (50), Expect = 5e-18 Identities = 65/70 (92%) Strand = Plus / Plus Query: 225 ttcgcggcggacaaggcggagtgcgtggacaagctgatggggctggcgacgtgcctgacg 284 ||||||||||||| ||||||||||| |||||||||||||| |||| |||||||||||||| Sbjct: 119 ttcgcggcggacagggcggagtgcgcggacaagctgatggcgctgtcgacgtgcctgacg 178 Query: 285 tacgtgcagg 294 | |||||||| Sbjct: 179 ttcgtgcagg 188
>gb|BT017888.1| Zea mays clone EL01N0514H07.c mRNA sequence Length = 867 Score = 63.9 bits (32), Expect = 3e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 231 gcggacaaggcggagtgcgtggacaagctgatggggctggcgacgtgcctgacgtacgtg 290 ||||||||| ||||||||| |||| ||||| |||| |||||| |||||||| ||||||| Sbjct: 147 gcggacaagacggagtgcgcggaccagctggtgggcctggcgccgtgcctgcagtacgtg 206 Query: 291 cagg 294 |||| Sbjct: 207 cagg 210
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19, complete sequence Length = 150620 Score = 63.9 bits (32), Expect = 3e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 231 gcggacaaggcggagtgcgtggacaagctgatggggctggcgacgtgcctgacgtacgtg 290 ||||||| | ||||||||| |||| ||||| ||||||||||| |||||||| ||||||| Sbjct: 125828 gcggacaggacggagtgcgcggaccagctggtggggctggcgccgtgcctgcagtacgtg 125887 Query: 291 cagg 294 |||| Sbjct: 125888 cagg 125891
>dbj|AK107307.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-D03, full insert sequence Length = 899 Score = 63.9 bits (32), Expect = 3e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 231 gcggacaaggcggagtgcgtggacaagctgatggggctggcgacgtgcctgacgtacgtg 290 ||||||| | ||||||||| |||| ||||| ||||||||||| |||||||| ||||||| Sbjct: 108 gcggacaggacggagtgcgcggaccagctggtggggctggcgccgtgcctgcagtacgtg 167 Query: 291 cagg 294 |||| Sbjct: 168 cagg 171
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Plus Query: 213 gccggcgcggacttcgcggcggac 236 |||||||||||||||||||||||| Sbjct: 2521108 gccggcgcggacttcgcggcggac 2521131
>ref|NM_188091.1| Oryza sativa (japonica cultivar-group), Ozsa8523 predicted mRNA Length = 774 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 224 cttcgcggcggacaaggcggag 245 |||||||||||||||||||||| Sbjct: 234 cttcgcggcggacaaggcggag 255
>ref|XM_542573.2| PREDICTED: Canis familiaris similar to Ubiquitin ligase Siah2 (Seven in absentia homolog 2) (Siah-2) (LOC485454), mRNA Length = 744 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Minus Query: 167 ggtggtgggggcgttgatggcggtgg 192 ||||||||||||| |||||||||||| Sbjct: 178 ggtggtgggggcggtgatggcggtgg 153
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 224 cttcgcggcggacaaggcggag 245 |||||||||||||||||||||| Sbjct: 9679135 cttcgcggcggacaaggcggag 9679156 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 ggtcgggctcgccggcgcgga 223 ||||||||||||||||||||| Sbjct: 30850961 ggtcgggctcgccggcgcgga 30850981
>dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0038F12 Length = 190014 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 224 cttcgcggcggacaaggcggag 245 |||||||||||||||||||||| Sbjct: 117138 cttcgcggcggacaaggcggag 117159
>dbj|AK108165.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-H04, full insert sequence Length = 953 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 224 cttcgcggcggacaaggcggag 245 |||||||||||||||||||||| Sbjct: 332 cttcgcggcggacaaggcggag 353
>ref|XM_472715.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2535 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 ggcgttgatggcggtggcggc 196 ||||||||||||||||||||| Sbjct: 2484 ggcgttgatggcggtggcggc 2504
>emb|AL731624.3|OSJN00266 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091C07, complete sequence Length = 138383 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 ggtcgggctcgccggcgcgga 223 ||||||||||||||||||||| Sbjct: 13910 ggtcgggctcgccggcgcgga 13890
>emb|AL731584.3|OSJN00224 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006M15, complete sequence Length = 143109 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 ggcgttgatggcggtggcggc 196 ||||||||||||||||||||| Sbjct: 84296 ggcgttgatggcggtggcggc 84276
>emb|AJ279812.1|ADP279812 Ascovirus DpAV4 genomic fragment containing gene for delta DNA polymerase, ORF1 to ORF26 Length = 12255 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 176 ggcgttgatggcggtggcggctgtgatgg 204 |||| |||||||||||||||| ||||||| Sbjct: 2065 ggcggtgatggcggtggcggcggtgatgg 2037
>gb|AF320253.1|AF320253 Azoarcus evansii aerobic 2-aminobenzoate metabolism type I operon, complete sequence Length = 11544 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 gtcgggctcgccggcgcggac 224 ||||||||||||||||||||| Sbjct: 4408 gtcgggctcgccggcgcggac 4428
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 ggcgttgatggcggtggcggc 196 ||||||||||||||||||||| Sbjct: 22747100 ggcgttgatggcggtggcggc 22747080 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 ggtcgggctcgccggcgcgga 223 ||||||||||||||||||||| Sbjct: 16763479 ggtcgggctcgccggcgcgga 16763459 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 gtcggcgtcgcacgcacggg 71 |||||||||||||||||||| Sbjct: 22841360 gtcggcgtcgcacgcacggg 22841341
>dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0638D12 Length = 161277 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 ggtcgggctcgccggcgcgga 223 ||||||||||||||||||||| Sbjct: 51328 ggtcgggctcgccggcgcgga 51348
>dbj|AP004264.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0025D09 Length = 142593 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 181 tgatggcggtggcggctgtgatggt 205 ||||||||||||||| ||||||||| Sbjct: 64781 tgatggcggtggcgggtgtgatggt 64805
>emb|AL132987.4|CNS01DTV Human chromosome 14 DNA sequence BAC R-188I13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 169505 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 167 ggtggtgggggcgttgatggcggtggcgg 195 |||||||| |||| ||||||||||||||| Sbjct: 166084 ggtggtggtggcggtgatggcggtggcgg 166112
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 gggggcgttgatggcggtgg 192 |||||||||||||||||||| Sbjct: 100709 gggggcgttgatggcggtgg 100690
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 ggctcgccggcgcggacttcgcgg 231 ||||||||| |||||||||||||| Sbjct: 497232 ggctcgccgacgcggacttcgcgg 497255
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ctcgccggcgcggacttcgc 229 |||||||||||||||||||| Sbjct: 2910610 ctcgccggcgcggacttcgc 2910591
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 tggtcgggctcgccggcgcg 221 |||||||||||||||||||| Sbjct: 2875099 tggtcgggctcgccggcgcg 2875118
>ref|XM_807206.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510241.40) partial mRNA Length = 1812 Score = 40.1 bits (20), Expect = 4.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 165 gcggtggtgggggcgttgatggcggtggcggc 196 |||||||||| |||| || ||||||||||||| Sbjct: 1180 gcggtggtggtggcggtggtggcggtggcggc 1149
>emb|AL117203.1|CEY48C3A Caenorhabditis elegans YAC Y48C3A, complete sequence Length = 165027 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 tgatggcggtggcggctgtgatgg 204 |||||||||||||||||| ||||| Sbjct: 133047 tgatggcggtggcggctgggatgg 133024
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 tggtcgggctcgccggcgcg 221 |||||||||||||||||||| Sbjct: 1053625 tggtcgggctcgccggcgcg 1053644
>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21, complete sequence Length = 138969 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 gtcggcgtcgcacgcacggg 71 |||||||||||||||||||| Sbjct: 50135 gtcggcgtcgcacgcacggg 50116
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 167 ggtggtgggggcgttgatggcggtggcg 194 ||||| || ||||||||||||||||||| Sbjct: 2288034 ggtggcggaggcgttgatggcggtggcg 2288007
>gb|AC023566.11| Homo sapiens chromosome 8, clone RP11-660D5, complete sequence Length = 184543 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 gggaaacaccagccaactgt 92 |||||||||||||||||||| Sbjct: 31542 gggaaacaccagccaactgt 31561
>ref|NM_064419.4| Caenorhabditis elegans Y48C3A.12 (Y48C3A.12) mRNA, complete cds Length = 2101 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 tgatggcggtggcggctgtgatgg 204 |||||||||||||||||| ||||| Sbjct: 1920 tgatggcggtggcggctgggatgg 1897
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 tggtcgggctcgccggcgcg 221 |||||||||||||||||||| Sbjct: 647417 tggtcgggctcgccggcgcg 647436
>gb|AC113186.6| Homo sapiens chromosome 8, clone RP11-941L11, complete sequence Length = 151000 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 gggaaacaccagccaactgt 92 |||||||||||||||||||| Sbjct: 91077 gggaaacaccagccaactgt 91096
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 cggcgcggacttcgcggcgg 234 |||||||||||||||||||| Sbjct: 263426 cggcgcggacttcgcggcgg 263407
>gb|AE005159.1| Halobacterium sp. NRC-1 plasmid pNRC200 section 20 of 32 of the complete genome Length = 11050 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 tgatggcggtggcggctgtg 200 |||||||||||||||||||| Sbjct: 6094 tgatggcggtggcggctgtg 6075
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 209 gctcgccggcgcggacttcgcggc 232 |||||||||||||||| ||||||| Sbjct: 1160890 gctcgccggcgcggacatcgcggc 1160913
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 acaagctgatggggctggcg 272 |||||||||||||||||||| Sbjct: 2105071 acaagctgatggggctggcg 2105090
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 acaagctgatggggctggcg 272 |||||||||||||||||||| Sbjct: 223061 acaagctgatggggctggcg 223080 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,525,016 Number of Sequences: 3902068 Number of extensions: 1525016 Number of successful extensions: 34936 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33850 Number of HSP's gapped (non-prelim): 1086 length of query: 303 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 281 effective length of database: 17,147,199,772 effective search space: 4818363135932 effective search space used: 4818363135932 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
