ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet98d08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC087546.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0012D19, complete sequence Length = 153276 Score = 123 bits (62), Expect = 5e-25 Identities = 131/154 (85%) Strand = Plus / Plus Query: 263 gctgcggctgtacatcgtgttctactccatgtacgggcacgtggaagcgctggcgcgtca 322 ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | Sbjct: 146036 gctgcggctgtacatcgtgttctactcgatgtacgggcacgtggaggcgctggcgcggcg 146095 Query: 323 cgcggcagcgggagcgggtgcggtagagggggtggaggccgtcctgcggcgggtgccgga 382 ||||| ||||| | | ||||| || ||||||||||| || |||||||| || || || Sbjct: 146096 ggcggcggcgggcgtcgcggcggtggacggggtggaggcggtgctgcggcgcgtccccga 146155 Query: 383 gactctctcggcggaggtgctggagaagatgcag 416 ||| ||| || ||| |||||||||||||||||| Sbjct: 146156 gacgctcccgccgggcgtgctggagaagatgcag 146189 Score = 115 bits (58), Expect = 1e-22 Identities = 82/90 (91%) Strand = Plus / Plus Query: 104 gccggagatgggcaagggcggcggctgcgtccccagcaagaagcgccagccgccagccac 163 ||||| |||||| |||||||||||||||||||||||||||||||| |||||||| |||| Sbjct: 145886 gccggtgatggggaagggcggcggctgcgtccccagcaagaagcggcagccgccggccag 145945 Query: 164 caccgtcgccaccgcgccctcgtcgtcgtc 193 |||||||||| |||||| ||||||||||| Sbjct: 145946 caccgtcgccggcgcgccgtcgtcgtcgtc 145975
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 123 bits (62), Expect = 5e-25 Identities = 131/154 (85%) Strand = Plus / Plus Query: 263 gctgcggctgtacatcgtgttctactccatgtacgggcacgtggaagcgctggcgcgtca 322 ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | Sbjct: 15087417 gctgcggctgtacatcgtgttctactcgatgtacgggcacgtggaggcgctggcgcggcg 15087476 Query: 323 cgcggcagcgggagcgggtgcggtagagggggtggaggccgtcctgcggcgggtgccgga 382 ||||| ||||| | | ||||| || ||||||||||| || |||||||| || || || Sbjct: 15087477 ggcggcggcgggcgtcgcggcggtggacggggtggaggcggtgctgcggcgcgtccccga 15087536 Query: 383 gactctctcggcggaggtgctggagaagatgcag 416 ||| ||| || ||| |||||||||||||||||| Sbjct: 15087537 gacgctcccgccgggcgtgctggagaagatgcag 15087570 Score = 115 bits (58), Expect = 1e-22 Identities = 82/90 (91%) Strand = Plus / Plus Query: 104 gccggagatgggcaagggcggcggctgcgtccccagcaagaagcgccagccgccagccac 163 ||||| |||||| |||||||||||||||||||||||||||||||| |||||||| |||| Sbjct: 15087267 gccggtgatggggaagggcggcggctgcgtccccagcaagaagcggcagccgccggccag 15087326 Query: 164 caccgtcgccaccgcgccctcgtcgtcgtc 193 |||||||||| |||||| ||||||||||| Sbjct: 15087327 caccgtcgccggcgcgccgtcgtcgtcgtc 15087356 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 ggcaagggcggcggctgcgt 133 |||||||||||||||||||| Sbjct: 21290687 ggcaagggcggcggctgcgt 21290668 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 179 gccctcgtcgtcgtccgccaccgc 202 ||||||||||||||||||| |||| Sbjct: 265572 gccctcgtcgtcgtccgccgccgc 265595
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 123 bits (62), Expect = 5e-25 Identities = 131/154 (85%) Strand = Plus / Plus Query: 263 gctgcggctgtacatcgtgttctactccatgtacgggcacgtggaagcgctggcgcgtca 322 ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | Sbjct: 15095658 gctgcggctgtacatcgtgttctactcgatgtacgggcacgtggaggcgctggcgcggcg 15095717 Query: 323 cgcggcagcgggagcgggtgcggtagagggggtggaggccgtcctgcggcgggtgccgga 382 ||||| ||||| | | ||||| || ||||||||||| || |||||||| || || || Sbjct: 15095718 ggcggcggcgggcgtcgcggcggtggacggggtggaggcggtgctgcggcgcgtccccga 15095777 Query: 383 gactctctcggcggaggtgctggagaagatgcag 416 ||| ||| || ||| |||||||||||||||||| Sbjct: 15095778 gacgctcccgccgggcgtgctggagaagatgcag 15095811 Score = 115 bits (58), Expect = 1e-22 Identities = 82/90 (91%) Strand = Plus / Plus Query: 104 gccggagatgggcaagggcggcggctgcgtccccagcaagaagcgccagccgccagccac 163 ||||| |||||| |||||||||||||||||||||||||||||||| |||||||| |||| Sbjct: 15095508 gccggtgatggggaagggcggcggctgcgtccccagcaagaagcggcagccgccggccag 15095567 Query: 164 caccgtcgccaccgcgccctcgtcgtcgtc 193 |||||||||| |||||| ||||||||||| Sbjct: 15095568 caccgtcgccggcgcgccgtcgtcgtcgtc 15095597 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 ggcaagggcggcggctgcgt 133 |||||||||||||||||||| Sbjct: 21301951 ggcaagggcggcggctgcgt 21301932 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 179 gccctcgtcgtcgtccgccaccgc 202 ||||||||||||||||||| |||| Sbjct: 265569 gccctcgtcgtcgtccgccgccgc 265592
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 104 gccggagatgggcaagggcggcggctgcgtccccagcaagaagcgccagccgccagccac 163 ||||| |||| | ||||||||| |||||||||||| ||||||||| ||||||| |||| Sbjct: 24078914 gccggtgatgaggaagggcggcagctgcgtccccaacaagaagcggtagccgccggccaa 24078973 Query: 164 caccgtc 170 ||||||| Sbjct: 24078974 caccgtc 24078980 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 171 gccaccgcgccctcgtcgtcgtccgcca 198 |||||| |||||||| |||||||||||| Sbjct: 19753434 gccaccccgccctcggcgtcgtccgcca 19753461
>dbj|AP004376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0481F05 Length = 139739 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 104 gccggagatgggcaagggcggcggctgcgtccccagcaagaagcgccagccgccagccac 163 ||||| |||| | ||||||||| |||||||||||| ||||||||| ||||||| |||| Sbjct: 106314 gccggtgatgaggaagggcggcagctgcgtccccaacaagaagcggtagccgccggccaa 106373 Query: 164 caccgtc 170 ||||||| Sbjct: 106374 caccgtc 106380
>dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0028A08 Length = 150818 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 104 gccggagatgggcaagggcggcggctgcgtccccagcaagaagcgccagccgccagccac 163 ||||| |||| | ||||||||| |||||||||||| ||||||||| ||||||| |||| Sbjct: 32400 gccggtgatgaggaagggcggcagctgcgtccccaacaagaagcggtagccgccggccaa 32459 Query: 164 caccgtc 170 ||||||| Sbjct: 32460 caccgtc 32466
>ref|XM_469744.1| Oryza sativa (japonica cultivar-group), mRNA Length = 759 Score = 56.0 bits (28), Expect = 9e-05 Identities = 28/28 (100%) Strand = Plus / Plus Query: 277 tcgtgttctactccatgtacgggcacgt 304 |||||||||||||||||||||||||||| Sbjct: 143 tcgtgttctactccatgtacgggcacgt 170 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Plus Query: 111 atgggcaagggcggcggctgcgtccccagcaaga 144 ||||||||||||||||||||| |||| ||||||| Sbjct: 1 atgggcaagggcggcggctgcatcccgagcaaga 34
>gb|AY644646.1| Oryza sativa (indica cultivar-group) putative quinone reductase (QR) mRNA, complete cds Length = 963 Score = 56.0 bits (28), Expect = 9e-05 Identities = 28/28 (100%) Strand = Plus / Plus Query: 277 tcgtgttctactccatgtacgggcacgt 304 |||||||||||||||||||||||||||| Sbjct: 148 tcgtgttctactccatgtacgggcacgt 175 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 110 gatgggcaagggcggcggctgcgtccccagcaaga 144 |||||||||||||||||||||| |||| ||||||| Sbjct: 5 gatgggcaagggcggcggctgcatcccgagcaaga 39
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 56.0 bits (28), Expect = 9e-05 Identities = 28/28 (100%) Strand = Plus / Minus Query: 277 tcgtgttctactccatgtacgggcacgt 304 |||||||||||||||||||||||||||| Sbjct: 30516100 tcgtgttctactccatgtacgggcacgt 30516073 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 110 gatgggcaagggcggcggctgcgtccccagcaaga 144 |||||||||||||||||||||| |||| ||||||| Sbjct: 30516243 gatgggcaagggcggcggctgcatcccgagcaaga 30516209
>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete sequence Length = 139872 Score = 56.0 bits (28), Expect = 9e-05 Identities = 28/28 (100%) Strand = Plus / Minus Query: 277 tcgtgttctactccatgtacgggcacgt 304 |||||||||||||||||||||||||||| Sbjct: 47673 tcgtgttctactccatgtacgggcacgt 47646 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 110 gatgggcaagggcggcggctgcgtccccagcaaga 144 |||||||||||||||||||||| |||| ||||||| Sbjct: 47816 gatgggcaagggcggcggctgcatcccgagcaaga 47782
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 56.0 bits (28), Expect = 9e-05 Identities = 28/28 (100%) Strand = Plus / Minus Query: 277 tcgtgttctactccatgtacgggcacgt 304 |||||||||||||||||||||||||||| Sbjct: 30607522 tcgtgttctactccatgtacgggcacgt 30607495 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 110 gatgggcaagggcggcggctgcgtccccagcaaga 144 |||||||||||||||||||||| |||| ||||||| Sbjct: 30607665 gatgggcaagggcggcggctgcatcccgagcaaga 30607631
>dbj|AK110695.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-A09, full insert sequence Length = 952 Score = 56.0 bits (28), Expect = 9e-05 Identities = 28/28 (100%) Strand = Plus / Plus Query: 277 tcgtgttctactccatgtacgggcacgt 304 |||||||||||||||||||||||||||| Sbjct: 137 tcgtgttctactccatgtacgggcacgt 164 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 117 aagggcggcggctgcgtccccagcaaga 144 ||||||||||||||| |||| ||||||| Sbjct: 1 aagggcggcggctgcatcccgagcaaga 28
>gb|AY105207.1| Zea mays PCO125387 mRNA sequence Length = 603 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Plus Query: 381 gagactctctcggcggaggtgctggagaagatgcag 416 ||||| ||| || ||||||||||||||||||||||| Sbjct: 7 gagacgctcccgccggaggtgctggagaagatgcag 42
>ref|XM_652809.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0297.2), mRNA Length = 615 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Plus Query: 275 catcgtgttctactccatgtacgggcacgt 304 |||||| ||||||||||||||||| ||||| Sbjct: 18 catcgtcttctactccatgtacggccacgt 47
>gb|AF294228.1| Xanthomonas campestris pv. campestris phi-Lf phage-like gene sequence Length = 4445 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 157 cagccaccaccgtcgccaccgc 178 |||||||||||||||||||||| Sbjct: 3230 cagccaccaccgtcgccaccgc 3251
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 163 ccaccgtcgccaccgcgccctcgtcg 188 |||||| ||||||||||||||||||| Sbjct: 27458972 ccaccgccgccaccgcgccctcgtcg 27458997 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Plus Query: 147 cgccagccgccagccaccaccgtcgccacc 176 ||||||||||||||| |||||| ||||||| Sbjct: 14503378 cgccagccgccagccgccaccgccgccacc 14503407 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 tcgtcgtcgtccgccaccgc 202 |||||||||||||||||||| Sbjct: 626016 tcgtcgtcgtccgccaccgc 626035
>emb|AL928743.1|CNS08CBG Oryza sativa chromosome 12, . BAC OSJNBb0011N16 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 55237 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 163 ccaccgtcgccaccgcgccctcgtcg 188 |||||| ||||||||||||||||||| Sbjct: 22846 ccaccgccgccaccgcgccctcgtcg 22821
>dbj|AK110532.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-A05, full insert sequence Length = 1500 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 163 ccaccgtcgccaccgcgccctcgtcg 188 |||||| ||||||||||||||||||| Sbjct: 341 ccaccgccgccaccgcgccctcgtcg 366
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 163 ccaccgtcgccaccgcgccctcgtcg 188 |||||| ||||||||||||||||||| Sbjct: 27384572 ccaccgccgccaccgcgccctcgtcg 27384597 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Plus Query: 147 cgccagccgccagccaccaccgtcgccacc 176 ||||||||||||||| |||||| ||||||| Sbjct: 14457662 cgccagccgccagccgccaccgccgccacc 14457691 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 tcgtcgtcgtccgccaccgc 202 |||||||||||||||||||| Sbjct: 626016 tcgtcgtcgtccgccaccgc 626035
>emb|AL772414.3|CNS08C9S Oryza sativa chromosome 12, . BAC OSJNBa0040E18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 158261 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Minus Query: 147 cgccagccgccagccaccaccgtcgccacc 176 ||||||||||||||| |||||| ||||||| Sbjct: 157915 cgccagccgccagccgccaccgccgccacc 157886
>emb|AL732378.3|CNS08C91 Oryza sativa chromosome 12, . BAC OSJNBa0063N15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 109222 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 163 ccaccgtcgccaccgcgccctcgtcg 188 |||||| ||||||||||||||||||| Sbjct: 34886 ccaccgccgccaccgcgccctcgtcg 34911
>emb|AL731753.2|CNS08C82 Oryza sativa chromosome 12, . BAC OJ1112_B07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 118101 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Minus Query: 147 cgccagccgccagccaccaccgtcgccacc 176 ||||||||||||||| |||||| ||||||| Sbjct: 13914 cgccagccgccagccgccaccgccgccacc 13885
>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17, complete sequence Length = 148829 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 175 ccgcgccctcgtcgtcgtccgccaccgcg 203 |||||| |||||||||||| ||||||||| Sbjct: 86031 ccgcgcgctcgtcgtcgtcggccaccgcg 86059
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 285 tactccatgtacgggcacgtggaagcgctggcg 317 ||||||| ||||||||||||||||| |||||| Sbjct: 516779 tactccacctacgggcacgtggaagccctggcg 516811
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 302 cgtggaagcgctggcgcgtca 322 ||||||||||||||||||||| Sbjct: 117063 cgtggaagcgctggcgcgtca 117043
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 175 ccgcgccctcgtcgtcgtccgccaccgcg 203 |||||| |||||||||||| ||||||||| Sbjct: 18982833 ccgcgcgctcgtcgtcgtcggccaccgcg 18982861
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 163 ccaccgtcgccaccgcgccctcgtcgtcg 191 |||||| |||||||||| ||||||||||| Sbjct: 5042720 ccaccggcgccaccgcgacctcgtcgtcg 5042692
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 178 cgccctcgtcgtcgtccgccaccgc 202 |||| |||||||||||||||||||| Sbjct: 18840574 cgccatcgtcgtcgtccgccaccgc 18840550 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tctactccatgtacgggcac 302 |||||||||||||||||||| Sbjct: 31848982 tctactccatgtacgggcac 31849001 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 tcgtcgtcgtccgccaccgc 202 |||||||||||||||||||| Sbjct: 13894964 tcgtcgtcgtccgccaccgc 13894945
>dbj|AP004357.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1074C08 Length = 165701 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 178 cgccctcgtcgtcgtccgccaccgc 202 |||| |||||||||||||||||||| Sbjct: 12964 cgccatcgtcgtcgtccgccaccgc 12940
>dbj|AP004641.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1147B04 Length = 142956 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 178 cgccctcgtcgtcgtccgccaccgc 202 |||| |||||||||||||||||||| Sbjct: 47585 cgccatcgtcgtcgtccgccaccgc 47561
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 caccgcgccctcgtcgtcgtc 193 ||||||||||||||||||||| Sbjct: 518594 caccgcgccctcgtcgtcgtc 518574
>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0049I08 Length = 144379 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 163 ccaccgtcgccaccgcgccctcgtcgtcg 191 |||||| |||||||||| ||||||||||| Sbjct: 84409 ccaccggcgccaccgcgacctcgtcgtcg 84381
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 tccccagcaagaagcgccagc 153 ||||||||||||||||||||| Sbjct: 908944 tccccagcaagaagcgccagc 908924
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 175 ccgcgccctcgtcgtcgtccgccaccgcg 203 |||||| |||||||||||| ||||||||| Sbjct: 19141482 ccgcgcgctcgtcgtcgtcggccaccgcg 19141510
>ref|XM_482385.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2547 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 171 gccaccgcgccctcgtcgtcgtccgcca 198 |||||| |||||||| |||||||||||| Sbjct: 128 gccaccccgccctcggcgtcgtccgcca 101
>ref|NM_194505.1| Oryza sativa (japonica cultivar-group) putative homeobox protein HAT22 (OSJNBa0096E22.15), mRNA Length = 744 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 179 gccctcgtcgtcgtccgccaccgc 202 ||||||||||||||||||| |||| Sbjct: 267 gccctcgtcgtcgtccgccgccgc 244
>ref|NM_184014.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 627 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 tcgtcgtcgtccgccaccgc 202 |||||||||||||||||||| Sbjct: 521 tcgtcgtcgtccgccaccgc 502
>gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0071K19, complete sequence Length = 174752 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 179 gccctcgtcgtcgtccgccaccgc 202 ||||||||||||||||||| |||| Sbjct: 30630 gccctcgtcgtcgtccgccgccgc 30653
>ref|XM_366979.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG03055.4) partial mRNA Length = 2166 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 cgccaccgcgccctcgtcgtcgtc 193 ||||||| |||||||||||||||| Sbjct: 489 cgccacctcgccctcgtcgtcgtc 512
>gb|AY219173.1| Zea mays submergence induced protein SI397 mRNA, complete cds Length = 1564 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 ccaccaccgtcgccaccgcg 179 |||||||||||||||||||| Sbjct: 935 ccaccaccgtcgccaccgcg 916
>ref|XM_818375.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.389.1030) partial mRNA Length = 657 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 cggaggtgctggagaagatg 413 |||||||||||||||||||| Sbjct: 623 cggaggtgctggagaagatg 642
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 gggcaagggcggcggctgcg 132 |||||||||||||||||||| Sbjct: 1690733 gggcaagggcggcggctgcg 1690714
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 ccaccgtcgccaccgcgccc 182 |||||||||||||||||||| Sbjct: 2591268 ccaccgtcgccaccgcgccc 2591287
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 179 gccctcgtcgtcgtccgccaccgc 202 ||||||||||||||||||| |||| Sbjct: 265572 gccctcgtcgtcgtccgccgccgc 265595
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 236 cgcacccaccggggagtcgagcca 259 ||||||||||||||||| |||||| Sbjct: 2313636 cgcacccaccggggagttgagcca 2313613
>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16 Length = 348580 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 ccaccaccgtcgccaccgcg 179 |||||||||||||||||||| Sbjct: 13856 ccaccaccgtcgccaccgcg 13837
>emb|AJ243504.1|LPE243504 Lolium perenne mRNA for pollen allergen (5C gene) Length = 1215 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 gccaccaccgtcgccaccgcgccc 182 ||||||||||||||| |||||||| Sbjct: 703 gccaccaccgtcgccgccgcgccc 726
>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete sequence Length = 135510 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 ggcaagggcggcggctgcgt 133 |||||||||||||||||||| Sbjct: 43672 ggcaagggcggcggctgcgt 43691
>gb|AC099400.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0096E22, complete sequence Length = 133846 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 179 gccctcgtcgtcgtccgccaccgc 202 ||||||||||||||||||| |||| Sbjct: 115235 gccctcgtcgtcgtccgccgccgc 115258
>dbj|AB193030.1| Corynebacterium glutamicum DNA, strain specific island 3, strain: R Length = 56248 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 gggcaagggcggcggctgcg 132 |||||||||||||||||||| Sbjct: 9952 gggcaagggcggcggctgcg 9971
>dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1131G08 Length = 158241 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tctactccatgtacgggcac 302 |||||||||||||||||||| Sbjct: 35060 tctactccatgtacgggcac 35079
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 agggggtggaggccgtcctg 368 |||||||||||||||||||| Sbjct: 1154649 agggggtggaggccgtcctg 1154630 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 ggaggtgctggagaagatgc 414 |||||||||||||||||||| Sbjct: 966143 ggaggtgctggagaagatgc 966124 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 ggaggtgctggagaagatgc 414 |||||||||||||||||||| Sbjct: 227546 ggaggtgctggagaagatgc 227527
>dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, complete sequence Length = 256992 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 ggaggtgctggagaagatgc 414 |||||||||||||||||||| Sbjct: 239375 ggaggtgctggagaagatgc 239356
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 aggtgctggagaagatgcag 416 |||||||||||||||||||| Sbjct: 87281 aggtgctggagaagatgcag 87300
>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1051E10 Length = 207782 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 tcgtcgtcgtccgccaccgc 202 |||||||||||||||||||| Sbjct: 55266 tcgtcgtcgtccgccaccgc 55247
>dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0440D10 Length = 144340 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 tcgtcgtcgtccgccaccgc 202 |||||||||||||||||||| Sbjct: 132367 tcgtcgtcgtccgccaccgc 132348
>dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0007M04 Length = 176293 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 171 gccaccgcgccctcgtcgtcgtccgcca 198 |||||| |||||||| |||||||||||| Sbjct: 82385 gccaccccgccctcggcgtcgtccgcca 82412
>dbj|AK108540.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-D01, full insert sequence Length = 1589 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 tcgtcgtcgtccgccaccgc 202 |||||||||||||||||||| Sbjct: 738 tcgtcgtcgtccgccaccgc 757
>dbj|AK106924.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-B08, full insert sequence Length = 1682 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 ggcaagggcggcggctgcgt 133 |||||||||||||||||||| Sbjct: 1091 ggcaagggcggcggctgcgt 1110
>dbj|AK101557.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050C11, full insert sequence Length = 2087 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cacgcggcagcgggagcggg 340 |||||||||||||||||||| Sbjct: 446 cacgcggcagcgggagcggg 465
>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 115859 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 tcgtcgtcgtccgccaccgc 202 |||||||||||||||||||| Sbjct: 22827 tcgtcgtcgtccgccaccgc 22808
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 agggggtggaggccgtcctg 368 |||||||||||||||||||| Sbjct: 828601 agggggtggaggccgtcctg 828582
>gb|M38342.1|PPTKBG31 Poa pratensis pollen allergen (KBG 31) mRNA, complete cds Length = 1322 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 ccaccgtcgccaccgcgccc 182 |||||||||||||||||||| Sbjct: 941 ccaccgtcgccaccgcgccc 960 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,915,674 Number of Sequences: 3902068 Number of extensions: 2915674 Number of successful extensions: 73235 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71282 Number of HSP's gapped (non-prelim): 1949 length of query: 416 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 394 effective length of database: 17,147,199,772 effective search space: 6755996710168 effective search space used: 6755996710168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
