ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet98d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TRAD1_ECOLI (P09130) Protein traD 29 4.1
2UL14_VZVD (P09295) Hypothetical gene 46 protein 28 7.0
3PSAG_HORVU (Q00327) Photosystem I reaction center subunit V, chl... 28 7.0

>TRAD1_ECOLI (P09130) Protein traD|
          Length = 717

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 18  DQGLAARWSLSTHPPTQLQLRRRSEDHGHLHRRR 119
           D      W    HP  Q Q++RR E + ++HR R
Sbjct: 674 DMAAYEAWQQENHPDIQQQMQRREEVNINVHRER 707



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>UL14_VZVD (P09295) Hypothetical gene 46 protein|
          Length = 199

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 18  DQGLAARWSLSTHPPTQLQLR 80
           D+ L  +W L+THPPT   L+
Sbjct: 144 DEALLTQWMLTTHPPTSKYLQ 164



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>PSAG_HORVU (Q00327) Photosystem I reaction center subunit V, chloroplast|
           precursor (PSI-G) (Photosystem I 9 kDa protein)
          Length = 143

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +1

Query: 97  MATSTAAVLSPPA 135
           MATSTAAVLSPPA
Sbjct: 1   MATSTAAVLSPPA 13


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,601,071
Number of Sequences: 219361
Number of extensions: 186637
Number of successful extensions: 598
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 80,573,946
effective HSP length: 20
effective length of database: 76,186,726
effective search space used: 1828481424
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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