ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet98d01 |
|---|---|
| Clone Library Name | barley_pub |
>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)| Length = 1513 Score = 32.3 bits (72), Expect = 0.61 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = -2 Query: 172 TFLHIS*TCFPRADATTSTSTPGYLSLSICTTGKKSTFS*TPPETTQHTRRT-SPRT 5 T HI+ T P TTST++P + T+ ST S TP TT T T SP T Sbjct: 1426 TTSHITSTVSPTTSPTTSTTSPTTSPTTSTTSPTTSTTSPTPSPTTSTTSPTPSPTT 1482
>CCPR_CRYNV (Q6URB0) Cytochrome c peroxidase, mitochondrial precursor (EC| 1.11.1.5) (CCP) Length = 377 Score = 30.8 bits (68), Expect = 1.8 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +3 Query: 351 YPNVNGAGAGLFLTEMFKPATTNLADGGLHMYQDMLE 461 Y +G G F T FKP + A+ GLH+ ++ +E Sbjct: 143 YSKADGTGGSNFATMRFKPEAEHSANNGLHVAREHME 179
>GLI3_PANTR (Q5IS56) Zinc finger protein GLI3| Length = 1580 Score = 30.4 bits (67), Expect = 2.3 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Frame = +3 Query: 102 YPGVLVDVVASARGKQVYEMCKNVRYANVYDPDDEWPEPAEYTHQLGVM---KNRYYDMV 272 Y +D + S M R + D PAEY HQ+ ++ ++ Y D++ Sbjct: 196 YINPYMDYIRSLHSSPSLSMISATRGLSPTDAPHAGVSPAEYYHQMALLTGQRSPYADII 255 Query: 273 LSTKLAGTG 299 S AGTG Sbjct: 256 PSAATAGTG 264
>GLI3_HUMAN (P10071) Zinc finger protein GLI3| Length = 1580 Score = 30.4 bits (67), Expect = 2.3 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Frame = +3 Query: 102 YPGVLVDVVASARGKQVYEMCKNVRYANVYDPDDEWPEPAEYTHQLGVM---KNRYYDMV 272 Y +D + S M R + D PAEY HQ+ ++ ++ Y D++ Sbjct: 196 YINPYMDYIRSLHSSPSLSMISATRGLSPTDAPHAGVSPAEYYHQMALLTGQRSPYADII 255 Query: 273 LSTKLAGTG 299 S AGTG Sbjct: 256 PSAATAGTG 264
>CCPR_CRYNE (Q5KIK5) Cytochrome c peroxidase, mitochondrial precursor (EC| 1.11.1.5) (CCP) Length = 377 Score = 29.6 bits (65), Expect = 3.9 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +3 Query: 351 YPNVNGAGAGLFLTEMFKPATTNLADGGLHMYQDMLE 461 Y +G G F T FKP + A+ GLH+ ++ +E Sbjct: 143 YNKEDGTGGSNFATMRFKPEAEHSANNGLHVAREHME 179
>PACC_EMENI (Q00202) pH-response transcription factor pacC/RIM101| Length = 678 Score = 29.3 bits (64), Expect = 5.1 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = -2 Query: 184 LAYRTFLHIS*TCFPRADATTSTSTPGYLSLSICTTGKKSTFS*TPPETTQ-HTRRTSPR 8 ++YRT H T P A ATT T+ +S + + ST + TPP + Q +T SP Sbjct: 378 ISYRT-THSPPTQLPSAHATTQTTAGPIISNTSAHSPSSSTPALTPPSSAQSYTSGRSPI 436 Query: 7 TL 2 +L Sbjct: 437 SL 438
>EDSP_CYNPY (P46058) Epidermal differentiation-specific protein| Length = 335 Score = 29.3 bits (64), Expect = 5.1 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = +3 Query: 348 VYPNVNGAGAGLFLTEMFKPATTNLADGGLH 440 VY +VNG G L LTE TNLA G +H Sbjct: 91 VYEHVNGGGKALVLTE-----ETNLAFGNMH 116
>GCSP_CHICK (P15505) Glycine dehydrogenase [decarboxylating], mitochondrial| precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 1004 Score = 28.9 bits (63), Expect = 6.7 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +3 Query: 69 FFPVVQMLKDRYPGVLVDVVASARGKQVYEMCKNVRYANV 188 FF V + L PG +V V A GK+VY + R ++ Sbjct: 317 FFAVKENLVRMMPGRMVGVTRDANGKEVYRLALQTREQHI 356
>NAS20_CAEEL (Q22396) Zinc metalloproteinase nas-20 precursor (EC 3.4.24.21)| (Nematode astacin 20) Length = 379 Score = 28.5 bits (62), Expect = 8.7 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 6/76 (7%) Frame = +3 Query: 84 QMLKDRYPGVLVDVVASARGKQVYEMCKNVRYANVY----DP--DDEWPEPAEYTHQLGV 245 Q DR ++VD S G + E Y +V DP D P EY +G Sbjct: 131 QARSDRDDYLIVDSTNSNDGIENTENLVPFDYGSVMLYARDPHSDKRIPIDPEYNFTMGS 190 Query: 246 MKNRYYDMVLSTKLAG 293 ++ +YDMVL K G Sbjct: 191 LRVAFYDMVLLNKFYG 206
>GCSP_HUMAN (P23378) Glycine dehydrogenase [decarboxylating], mitochondrial| precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 1020 Score = 28.5 bits (62), Expect = 8.7 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +3 Query: 69 FFPVVQMLKDRYPGVLVDVVASARGKQVYEMCKNVRYANV 188 FF V + L PG +V V A GK+VY + R ++ Sbjct: 333 FFAVRESLVRMMPGRMVGVTRDATGKEVYRLALQTREQHI 372
>GCSP_MOUSE (Q91W43) Glycine dehydrogenase [decarboxylating], mitochondrial| precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 1025 Score = 28.5 bits (62), Expect = 8.7 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +3 Query: 69 FFPVVQMLKDRYPGVLVDVVASARGKQVYEMCKNVRYANV 188 FF V + L PG +V V A GK+VY + R ++ Sbjct: 338 FFAVKENLVRMMPGRMVGVTRDATGKEVYRLALQTREQHI 377
>CLC4K_HUMAN (Q9UJ71) C-type lectin domain family 4 member K (Langerin) (CD207| antigen) Length = 328 Score = 28.5 bits (62), Expect = 8.7 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -3 Query: 312 GTARAPSLPAWSTGPCRSTY 253 G +APSL AW+ PC T+ Sbjct: 296 GNIKAPSLQAWNDAPCDKTF 315 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,345,944 Number of Sequences: 219361 Number of extensions: 690472 Number of successful extensions: 2606 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2540 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2603 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
