ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet98c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related ... 422 e-115
2emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor ... 264 1e-67
3gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, p... 50 0.003
4gb|BC108361.1| Mus musculus keratin complex 2, basic, gene 5, mR... 42 0.71
5gb|AC104862.15| Mus musculus chromosome 15, clone RP23-124I9, co... 42 0.71
6gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 42 0.71
7ref|NM_027011.1| Mus musculus keratin complex 2, basic, gene 5 (... 42 0.71
8gb|AC120787.14| Mus musculus chromosome 15, clone RP24-180L12, c... 42 0.71
9gb|AC102312.11| Mus musculus chromosome 10, clone RP24-428L4, co... 42 0.71
10gb|AF306785.1|AF306785 Mus musculus type II keratin 5 (K5) gene,... 42 0.71
11dbj|AK014363.1| Mus musculus 17 days embryo head cDNA, RIKEN ful... 42 0.71
12gb|BC006780.1| Mus musculus keratin complex 2, basic, gene 5, mR... 42 0.71
13gb|AC158595.25| Mus musculus 10 BAC RP24-216B14 (Roswell Park Ca... 42 0.71
14ref|XM_468027.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.8
15gb|AC023119.8| Homo sapiens BAC clone RP11-282B13 from 4, comple... 40 2.8
16dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
17dbj|AP004068.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
18gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 40 2.8 
>emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related peroxidase
          Length = 1245

 Score =  422 bits (213), Expect = e-115
 Identities = 213/213 (100%)
 Strand = Plus / Plus

                                                                       
Query: 7   gcaagccacacgaccctccctcagtcctaagtagctacctagctaggtccaggtgcaaga 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15  gcaagccacacgaccctccctcagtcctaagtagctacctagctaggtccaggtgcaaga 74

                                                                       
Query: 67  agaagctcagcttcagcaatggcgtccagagcagcagcggccatcgccgtcctggccttg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  agaagctcagcttcagcaatggcgtccagagcagcagcggccatcgccgtcctggccttg 134

                                                                       
Query: 127 gtctgcgccgccgtccactcgtcggagggccagctgtcaccaaacttccacgccgccacg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 gtctgcgccgccgtccactcgtcggagggccagctgtcaccaaacttccacgccgccacg 194

                                            
Query: 187 tgcccggacctggagcgcatcgtggagttccac 219
           |||||||||||||||||||||||||||||||||
Sbjct: 195 tgcccggacctggagcgcatcgtggagttccac 227
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>emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor (prx gene),
           cultivar Cheyenne
          Length = 1226

 Score =  264 bits (133), Expect = 1e-67
 Identities = 148/153 (96%)
 Strand = Plus / Plus

                                                                       
Query: 67  agaagctcagcttcagcaatggcgtccagagcagcagcggccatcgccgtcctggccttg 126
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  agaagctcagcttcagcgatggcgtccagagcagcagcggccatcgccgtcctggccttg 121

                                                                       
Query: 127 gtctgcgccgccgtccactcgtcggagggccagctgtcaccaaacttccacgccgccacg 186
           ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct: 122 gtctgcgccgccgtccactcgtcggagggccagctctcacccaacttccacgccgcgacg 181

                                            
Query: 187 tgcccggacctggagcgcatcgtggagttccac 219
           |||||||||||||||| ||||||||||||||||
Sbjct: 182 tgcccggacctggagcacatcgtggagttccac 214
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>gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, partial cds
          Length = 1308

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 80  cagcaatggcgtccagagcagcagcggcc 108
           |||| ||||||||||||||||||||||||
Sbjct: 23  cagccatggcgtccagagcagcagcggcc 51
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>gb|BC108361.1| Mus musculus keratin complex 2, basic, gene 5, mRNA (cDNA clone
            IMAGE:6312495), partial cds
          Length = 2253

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 71   gctcagcttcagcaatggcgt 91
            |||||||||||||||||||||
Sbjct: 1315 gctcagcttcagcaatggcgt 1295
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>gb|AC104862.15| Mus musculus chromosome 15, clone RP23-124I9, complete sequence
          Length = 168581

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 71   gctcagcttcagcaatggcgt 91
            |||||||||||||||||||||
Sbjct: 4166 gctcagcttcagcaatggcgt 4186
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>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 97     gcagcagcggccatcgccgtc 117
              |||||||||||||||||||||
Sbjct: 155467 gcagcagcggccatcgccgtc 155487
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>ref|NM_027011.1| Mus musculus keratin complex 2, basic, gene 5 (Krt2-5), mRNA
          Length = 2203

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 71   gctcagcttcagcaatggcgt 91
            |||||||||||||||||||||
Sbjct: 1318 gctcagcttcagcaatggcgt 1298
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>gb|AC120787.14| Mus musculus chromosome 15, clone RP24-180L12, complete sequence
          Length = 156603

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 71   gctcagcttcagcaatggcgt 91
            |||||||||||||||||||||
Sbjct: 1728 gctcagcttcagcaatggcgt 1708
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>gb|AC102312.11| Mus musculus chromosome 10, clone RP24-428L4, complete sequence
          Length = 182940

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 39    agctacctagctaggtccagg 59
             |||||||||||||||||||||
Sbjct: 47078 agctacctagctaggtccagg 47058
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>gb|AF306785.1|AF306785 Mus musculus type II keratin 5 (K5) gene, complete cds
          Length = 10700

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 71   gctcagcttcagcaatggcgt 91
            |||||||||||||||||||||
Sbjct: 6531 gctcagcttcagcaatggcgt 6511
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>dbj|AK014363.1| Mus musculus 17 days embryo head cDNA, RIKEN full-length enriched
           library, clone:3300001P10 product:KERATIN (FRAGMENT)
           homolog [Rattus norvegicus], full insert sequence
          Length = 969

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 71  gctcagcttcagcaatggcgt 91
           |||||||||||||||||||||
Sbjct: 102 gctcagcttcagcaatggcgt 82
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>gb|BC006780.1| Mus musculus keratin complex 2, basic, gene 5, mRNA (cDNA clone
            MGC:8116 IMAGE:3589013), complete cds
          Length = 2203

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 71   gctcagcttcagcaatggcgt 91
            |||||||||||||||||||||
Sbjct: 1318 gctcagcttcagcaatggcgt 1298
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>gb|AC158595.25| Mus musculus 10 BAC RP24-216B14 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 231740

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 39    agctacctagctaggtccagg 59
             |||||||||||||||||||||
Sbjct: 18129 agctacctagctaggtccagg 18149
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>ref|XM_468027.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1095

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  agcagcagcggccatcgccgtcct 119
           ||||||||| ||||||||||||||
Sbjct: 752 agcagcagcagccatcgccgtcct 775
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>gb|AC023119.8| Homo sapiens BAC clone RP11-282B13 from 4, complete sequence
          Length = 184121

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     gtcctaagtagctacctagc 49
              ||||||||||||||||||||
Sbjct: 104297 gtcctaagtagctacctagc 104278
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 96       agcagcagcggccatcgccgtcct 119
                ||||||||| ||||||||||||||
Sbjct: 32631155 agcagcagcagccatcgccgtcct 32631132
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>dbj|AP004068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1611_C08
          Length = 135386

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 96    agcagcagcggccatcgccgtcct 119
             ||||||||| ||||||||||||||
Sbjct: 58526 agcagcagcagccatcgccgtcct 58503
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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 100     gcagcggccatcgccgtcctggcc 123
               ||||| ||||||||||||||||||
Sbjct: 1205794 gcagcagccatcgccgtcctggcc 1205771


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,591,310
Number of Sequences: 3902068
Number of extensions: 1591310
Number of successful extensions: 116743
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116598
Number of HSP's gapped (non-prelim): 145
length of query: 219
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 197
effective length of database: 17,147,199,772
effective search space: 3377998355084
effective search space used: 3377998355084
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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