ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet98c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, com... 262 4e-67
2ref|NM_183815.1| Oryza sativa (japonica cultivar-group), predic... 62 8e-07
3emb|AJ401274.1|ZMA401274 Zea mays mRNA for peroxidase (pox1 gene) 62 8e-07
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 62 8e-07
5dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic D... 62 8e-07
6dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic D... 62 8e-07
7dbj|AK121616.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 8e-07
8tpe|BN000543.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 62 8e-07
9ref|NM_183810.1| Oryza sativa (japonica cultivar-group), predic... 56 5e-05
10dbj|AK068894.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 5e-05
11tpe|BN000541.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 56 5e-05
12ref|NM_183816.1| Oryza sativa (japonica cultivar-group), predic... 54 2e-04
13dbj|AK099187.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
14dbj|AK070715.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
15tpe|BN000544.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 54 2e-04
16dbj|AK060115.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.012
17gb|BC056999.1| Mus musculus neuropathy target esterase, mRNA (cD... 42 0.74
18gb|BC054789.1| Mus musculus neuropathy target esterase, mRNA (cD... 42 0.74
19dbj|AK162641.1| Mus musculus adult male bone cDNA, RIKEN full-le... 42 0.74
20dbj|AK040720.1| Mus musculus adult male aorta and vein cDNA, RIK... 42 0.74
21dbj|AK089095.1| Mus musculus 2 days neonate thymus thymic cells ... 42 0.74
22gb|AF173829.1|AF173829 Mus musculus neuropathy target esterase h... 42 0.74
23ref|NM_015801.1| Mus musculus neuropathy target esterase (Nte), ... 42 0.74
24gb|AC170806.2| Mus musculus BAC clone RP24-363P6 from chromosome... 42 0.74
25gb|AY816748.1| Synthetic construct clone pcNiV-Fopt C-terminal-A... 40 2.9
26gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 2.9
27gb|AC132936.9| Homo sapiens chromosome 11, clone RP13-569C6, com... 40 2.9
28dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 2.9
29dbj|AP006623.1| Homo sapiens genomic DNA, chromosome 11, clone:R... 40 2.9
30gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 2.9 
>gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, complete cds
          Length = 1282

 Score =  262 bits (132), Expect = 4e-67
 Identities = 144/148 (97%)
 Strand = Plus / Plus

                                                                       
Query: 78  ccatggcgagcagcggcagcctggccggtctggcggtgctgctcaccgccgtgctgtgcc 137
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  ccatggcgagcagcggcgggctggccggtctggcggtgctgctcaccgccgtgctgtgcc 122

                                                                       
Query: 138 tgcagctgccggtccacagccgcgcccagctgcgcgtcgggttctacaacaccacctgcc 197
           ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 123 tgcagctgccggtccacagccgcgcgcagctgcgcgtggggttctacaacaccacctgcc 182

                                       
Query: 198 ccaacgccgaggccatcgtccggcaggc 225
           ||||||||||||||||||||||||||||
Sbjct: 183 ccaacgccgaggccatcgtccggcaggc 210
to top
>ref|NM_183815.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1071

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                       
Query: 155 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 214
           ||||||| ||||||||  || |||||||||||||||| ||||||||| |||||| |  | 
Sbjct: 73  agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgagacgctg 132

                      
Query: 215 gtccggcaggc 225
           |||||||||||
Sbjct: 133 gtccggcaggc 143
to top
>emb|AJ401274.1|ZMA401274 Zea mays mRNA for peroxidase (pox1 gene)
          Length = 1398

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                          
Query: 179 ttctacaacaccacctgccccaacgccgaggccatcgtccggcaggc 225
           |||||| |||||| ||||||||||||||||||| ||||||| |||||
Sbjct: 168 ttctacgacaccagctgccccaacgccgaggccctcgtccgccaggc 214
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                            
Query: 155      agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 214
                ||||||| ||||||||  || |||||||||||||||| ||||||||| |||||| |  | 
Sbjct: 12534345 agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgagacgctg 12534404

                           
Query: 215      gtccggcaggc 225
                |||||||||||
Sbjct: 12534405 gtccggcaggc 12534415



 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                        
Query: 170      cgcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccggcaggc 225
                ||||||||||||||| | | || ||||||||||||||||||  ||||||| |||||
Sbjct: 12482977 cgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggc 12483032



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                            
Query: 155      agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 214
                ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||  | 
Sbjct: 12547310 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggcgctg 12547369

                           
Query: 215      gtccggcaggc 225
                |||||||||||
Sbjct: 12547370 gtccggcaggc 12547380
to top
>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0537A05
          Length = 152396

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                         
Query: 155   agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 214
             ||||||| ||||||||  || |||||||||||||||| ||||||||| |||||| |  | 
Sbjct: 45955 agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgagacgctg 46014

                        
Query: 215   gtccggcaggc 225
             |||||||||||
Sbjct: 46015 gtccggcaggc 46025



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                         
Query: 155   agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 214
             ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||  | 
Sbjct: 58920 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggcgctg 58979

                        
Query: 215   gtccggcaggc 225
             |||||||||||
Sbjct: 58980 gtccggcaggc 58990
to top
>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1135C02
          Length = 152306

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                          
Query: 155    agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 214
              ||||||| ||||||||  || |||||||||||||||| ||||||||| |||||| |  | 
Sbjct: 119960 agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgagacgctg 120019

                         
Query: 215    gtccggcaggc 225
              |||||||||||
Sbjct: 120020 gtccggcaggc 120030



 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                     
Query: 170   cgcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccggcaggc 225
             ||||||||||||||| | | || ||||||||||||||||||  ||||||| |||||
Sbjct: 68592 cgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggc 68647



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                          
Query: 155    agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 214
              ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||  | 
Sbjct: 132925 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggcgctg 132984

                         
Query: 215    gtccggcaggc 225
              |||||||||||
Sbjct: 132985 gtccggcaggc 132995
to top
>dbj|AK121616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044C11, full
           insert sequence
          Length = 5938

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                       
Query: 155 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 214
           ||||||| ||||||||  || |||||||||||||||| ||||||||| |||||| |  | 
Sbjct: 135 agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgagacgctg 194

                      
Query: 215 gtccggcaggc 225
           |||||||||||
Sbjct: 195 gtccggcaggc 205
to top
>tpe|BN000543.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx14 gene for
           class III peroxidase 14 precursor, exons 1-3
          Length = 5620

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                       
Query: 155 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 214
           ||||||| ||||||||  || |||||||||||||||| ||||||||| |||||| |  | 
Sbjct: 73  agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgagacgctg 132

                      
Query: 215 gtccggcaggc 225
           |||||||||||
Sbjct: 133 gtccggcaggc 143
to top
>ref|NM_183810.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1041

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 170 cgcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccggcaggc 225
           ||||||||||||||| | | || ||||||||||||||||||  ||||||| |||||
Sbjct: 70  cgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggc 125
to top
>dbj|AK068894.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001H23, full
           insert sequence
          Length = 1382

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 170 cgcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccggcaggc 225
           ||||||||||||||| | | || ||||||||||||||||||  ||||||| |||||
Sbjct: 177 cgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggc 232
to top
>tpe|BN000541.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx12 gene for
           class III peroxidase 12 precursor, exons 1-3
          Length = 3928

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 170 cgcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccggcaggc 225
           ||||||||||||||| | | || ||||||||||||||||||  ||||||| |||||
Sbjct: 70  cgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggc 125
to top
>ref|NM_183816.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1062

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                       
Query: 155 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 214
           ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||  | 
Sbjct: 76  agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggcgctg 135

                      
Query: 215 gtccggcaggc 225
           |||||||||||
Sbjct: 136 gtccggcaggc 146
to top
>dbj|AK099187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107P11, full
           insert sequence
          Length = 1271

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                       
Query: 155 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 214
           ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||  | 
Sbjct: 146 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggcgctg 205

                      
Query: 215 gtccggcaggc 225
           |||||||||||
Sbjct: 206 gtccggcaggc 216
to top
>dbj|AK070715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058L02, full
           insert sequence
          Length = 1492

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                       
Query: 155 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 214
           ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||  | 
Sbjct: 151 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggcgctg 210

                      
Query: 215 gtccggcaggc 225
           |||||||||||
Sbjct: 211 gtccggcaggc 221
to top
>tpe|BN000544.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx15 gene for
           class III peroxidase 15 precursor, exons 1-3
          Length = 5322

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                       
Query: 155 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 214
           ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||  | 
Sbjct: 76  agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggcgctg 135

                      
Query: 215 gtccggcaggc 225
           |||||||||||
Sbjct: 136 gtccggcaggc 146
to top
>dbj|AK060115.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E07, full
           insert sequence
          Length = 1008

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 155 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggc 210
           ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||
Sbjct: 149 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggc 204
to top
>gb|BC056999.1| Mus musculus neuropathy target esterase, mRNA (cDNA clone MGC:66981
           IMAGE:6831507), complete cds
          Length = 4461

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 108 tggcggtgctgctcaccgccgtgct 132
           ||||||||||| |||||||||||||
Sbjct: 289 tggcggtgctggtcaccgccgtgct 313
to top
>gb|BC054789.1| Mus musculus neuropathy target esterase, mRNA (cDNA clone MGC:65634
           IMAGE:6831507), complete cds
          Length = 4461

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 108 tggcggtgctgctcaccgccgtgct 132
           ||||||||||| |||||||||||||
Sbjct: 289 tggcggtgctggtcaccgccgtgct 313
to top
>dbj|AK162641.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched
           library, clone:9830134O04 product:neuropathy target
           esterase, full insert sequence
          Length = 3840

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 108 tggcggtgctgctcaccgccgtgct 132
           ||||||||||| |||||||||||||
Sbjct: 244 tggcggtgctggtcaccgccgtgct 268
to top
>dbj|AK040720.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
           enriched library, clone:A530020D05 product:neuropathy
           target esterase, full insert sequence
          Length = 2892

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 108 tggcggtgctgctcaccgccgtgct 132
           ||||||||||| |||||||||||||
Sbjct: 325 tggcggtgctggtcaccgccgtgct 349
to top
>dbj|AK089095.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430039F18
           product:neuropathy target esterase, full insert sequence
          Length = 4265

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 108 tggcggtgctgctcaccgccgtgct 132
           ||||||||||| |||||||||||||
Sbjct: 232 tggcggtgctggtcaccgccgtgct 256
to top
>gb|AF173829.1|AF173829 Mus musculus neuropathy target esterase homolog mRNA, complete cds
          Length = 4459

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 108 tggcggtgctgctcaccgccgtgct 132
           ||||||||||| |||||||||||||
Sbjct: 271 tggcggtgctggtcaccgccgtgct 295
to top
>ref|NM_015801.1| Mus musculus neuropathy target esterase (Nte), mRNA
          Length = 4459

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 108 tggcggtgctgctcaccgccgtgct 132
           ||||||||||| |||||||||||||
Sbjct: 271 tggcggtgctggtcaccgccgtgct 295
to top
>gb|AC170806.2| Mus musculus BAC clone RP24-363P6 from chromosome 8, complete sequence
          Length = 182564

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 108   tggcggtgctgctcaccgccgtgct 132
             ||||||||||| |||||||||||||
Sbjct: 43546 tggcggtgctggtcaccgccgtgct 43570
to top
>gb|AY816748.1| Synthetic construct clone pcNiV-Fopt C-terminal-Au1-tagged F protein
            gene, complete cds
          Length = 1659

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 183  acaacaccacctgccccaacgccg 206
            |||||||||||||||||| |||||
Sbjct: 1238 acaacaccacctgccccaccgccg 1261
to top
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 97     cctggccggtctggcggtgctgct 120
              ||||||||||||||| ||||||||
Sbjct: 952400 cctggccggtctggccgtgctgct 952377
to top
>gb|AC132936.9| Homo sapiens chromosome 11, clone RP13-569C6, complete sequence
          Length = 178778

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 129   tgctgtgcctgcagctgccggtcc 152
             ||||||||||||||||||| ||||
Sbjct: 65419 tgctgtgcctgcagctgcccgtcc 65442
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 202     cgccgaggccatcgtccggcaggc 225
               |||||||||||||| |||||||||
Sbjct: 4743057 cgccgaggccatcgaccggcaggc 4743034
to top
>dbj|AP006623.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-1391J07, complete
             sequence
          Length = 121103

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 129   tgctgtgcctgcagctgccggtcc 152
             ||||||||||||||||||| ||||
Sbjct: 54446 tgctgtgcctgcagctgcccgtcc 54423
to top
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 90      gcggcagcctggccggtctg 109
               ||||||||||||||||||||
Sbjct: 4650072 gcggcagcctggccggtctg 4650053


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,540,073
Number of Sequences: 3902068
Number of extensions: 1540073
Number of successful extensions: 38897
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38478
Number of HSP's gapped (non-prelim): 419
length of query: 228
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 206
effective length of database: 17,147,199,772
effective search space: 3532323153032
effective search space used: 3532323153032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top