ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet98c10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK071823.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 4e-49
2ref|NM_189782.1| Oryza sativa (japonica cultivar-group), predic... 200 2e-48
3dbj|AK100697.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 1e-46
4gb|AY106272.1| Zea mays PCO085431 mRNA sequence 135 8e-29
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 117 2e-23
6dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic D... 117 2e-23
7ref|XM_480200.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.015
8ref|NM_189784.1| Oryza sativa (japonica cultivar-group), predic... 48 0.015
9dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.015
10dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.015
11dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.015
12dbj|AK062729.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.015
13dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 0.90
14ref|NM_193024.2| Oryza sativa (japonica cultivar-group), mRNA 40 3.6
15gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 3.6
16gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genom... 40 3.6
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 3.6
18ref|XM_532566.2| PREDICTED: Canis familiaris similar to Splicing... 40 3.6
19ref|XM_992201.1| PREDICTED: Mus musculus RIKEN cDNA 1700080G18 g... 40 3.6
20ref|XM_001000195.1| PREDICTED: Mus musculus RIKEN cDNA 1700080G1... 40 3.6
21emb|AL445238.12| Human DNA sequence from clone RP11-394A14 on ch... 40 3.6
22gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 3.6
23emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome 40 3.6
24gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 3.6
25gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 40 3.6
26gb|AC093538.2| Homo sapiens chromosome 5 clone RP11-99I23, compl... 40 3.6
27dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
28dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
29dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
30dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 40 3.6
31dbj|AK120623.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.6
32dbj|AK062899.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.6
33dbj|AP004009.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
34gb|AY104392.1| Zea mays PCO148550 mRNA sequence 40 3.6
35gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.6
36emb|AL713905.6|CNS07YQ5 Oryza sativa chromosome 12, . BAC OJ1584... 40 3.6
37emb|AL731887.5|CNS08C8R Oryza sativa chromosome 12, . BAC OJ1559... 40 3.6
38gb|AC134897.4| Mus musculus BAC clone RP23-459D9 from 6, complet... 40 3.6
39gb|AC153632.2| Mus musculus 6 BAC RP23-450O1 (Roswell Park Cance... 40 3.6 
>dbj|AK071823.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120I15, full
           insert sequence
          Length = 956

 Score =  202 bits (102), Expect = 4e-49
 Identities = 165/186 (88%)
 Strand = Plus / Plus

                                                                       
Query: 77  catggaggtcgctgcggcgaagcccgtcctccgcgtggccgccgtctgcggctccctccg 136
           |||||||| ||| ||||||| ||||||| ||||||| |||||| ||||||||||||||||
Sbjct: 132 catggaggccgcggcggcgaggcccgtcatccgcgtcgccgccatctgcggctccctccg 191

                                                                       
Query: 137 cagggcgtcctacaaccgcggcctcctccgcgccgcggcggaggtgtgcgaggagtcggt 196
           || ||| ||||||||| ||||||||||||||||||| |||| |||||||||||||||  |
Sbjct: 192 caaggcctcctacaacggcggcctcctccgcgccgccgcgggggtgtgcgaggagtccat 251

                                                                       
Query: 197 tccggggatgcgcgtggagcacgtggacatctccgcgctgccgctgctcaacaccgacct 256
            |||||  ||||||| || ||||| ||||||||||  |||||||||||||||||||||||
Sbjct: 252 cccgggcctgcgcgtcgaccacgtcgacatctccggcctgccgctgctcaacaccgacct 311

                 
Query: 257 cgagac 262
           ||||||
Sbjct: 312 cgagac 317
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>ref|NM_189782.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 594

 Score =  200 bits (101), Expect = 2e-48
 Identities = 164/185 (88%)
 Strand = Plus / Plus

                                                                       
Query: 78  atggaggtcgctgcggcgaagcccgtcctccgcgtggccgccgtctgcggctccctccgc 137
           ||||||| ||| ||||||| ||||||| ||||||| |||||| |||||||||||||||||
Sbjct: 1   atggaggccgcggcggcgaggcccgtcatccgcgtcgccgccatctgcggctccctccgc 60

                                                                       
Query: 138 agggcgtcctacaaccgcggcctcctccgcgccgcggcggaggtgtgcgaggagtcggtt 197
           | ||| ||||||||| ||||||||||||||||||| |||| |||||||||||||||  | 
Sbjct: 61  aaggcctcctacaacggcggcctcctccgcgccgccgcgggggtgtgcgaggagtccatc 120

                                                                       
Query: 198 ccggggatgcgcgtggagcacgtggacatctccgcgctgccgctgctcaacaccgacctc 257
           |||||  ||||||| || ||||| ||||||||||  ||||||||||||||||||||||||
Sbjct: 121 ccgggcctgcgcgtcgaccacgtcgacatctccggcctgccgctgctcaacaccgacctc 180

                
Query: 258 gagac 262
           |||||
Sbjct: 181 gagac 185
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>dbj|AK100697.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114J09, full
           insert sequence
          Length = 3015

 Score =  194 bits (98), Expect = 1e-46
 Identities = 164/186 (88%)
 Strand = Plus / Plus

                                                                       
Query: 77  catggaggtcgctgcggcgaagcccgtcctccgcgtggccgccgtctgcggctccctccg 136
           |||||||| ||| ||||||| ||||||| ||||||| |||||| ||||||||||||||||
Sbjct: 93  catggaggccgcggcggcgaggcccgtcatccgcgtcgccgccatctgcggctccctccg 152

                                                                       
Query: 137 cagggcgtcctacaaccgcggcctcctccgcgccgcggcggaggtgtgcgaggagtcggt 196
           || ||| ||||||||| ||||||||||||||||||| |||| |||||||||||||||  |
Sbjct: 153 caaggcctcctacaacggcggcctcctccgcgccgccgcgggggtgtgcgaggagtccat 212

                                                                       
Query: 197 tccggggatgcgcgtggagcacgtggacatctccgcgctgccgctgctcaacaccgacct 256
            |||||  ||||||| || |||||  |||||||||  |||||||||||||||||||||||
Sbjct: 213 cccgggcctgcgcgtcgaccacgtccacatctccggcctgccgctgctcaacaccgacct 272

                 
Query: 257 cgagac 262
           ||||||
Sbjct: 273 cgagac 278
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>gb|AY106272.1| Zea mays PCO085431 mRNA sequence
          Length = 1019

 Score =  135 bits (68), Expect = 8e-29
 Identities = 92/100 (92%)
 Strand = Plus / Plus

                                                                       
Query: 91  cggcgaagcccgtcctccgcgtggccgccgtctgcggctccctccgcagggcgtcctaca 150
           |||||| ||||||||| |||||||| ||| |||||||||||||||||| ||| |||| ||
Sbjct: 170 cggcgaggcccgtcctgcgcgtggctgccatctgcggctccctccgcaaggcctccttca 229

                                                   
Query: 151 accgcggcctcctccgcgccgcggcggaggtgtgcgagga 190
           |||||||||||||||||||||| |||||||||||||||||
Sbjct: 230 accgcggcctcctccgcgccgccgcggaggtgtgcgagga 269
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  117 bits (59), Expect = 2e-23
 Identities = 86/95 (90%)
 Strand = Plus / Minus

                                                                            
Query: 77       catggaggtcgctgcggcgaagcccgtcctccgcgtggccgccgtctgcggctccctccg 136
                |||||||| ||| ||||||| ||||||| ||||||| |||||| ||||||||||||||||
Sbjct: 42002014 catggaggccgcggcggcgaggcccgtcatccgcgtcgccgccatctgcggctccctccg 42001955

                                                   
Query: 137      cagggcgtcctacaaccgcggcctcctccgcgccg 171
                || ||| ||||||||| ||||||||||||||||||
Sbjct: 42001954 caaggcctcctacaacggcggcctcctccgcgccg 42001920



 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                            
Query: 174      gcggaggtgtgcgaggagtcggttccggggatgcgcgtggagcacgtggacatctccgcg 233
                |||| |||||||||||||||  | |||||  ||||||| || ||||| ||||||||||  
Sbjct: 42001796 gcgggggtgtgcgaggagtccatcccgggcctgcgcgtcgaccacgtcgacatctccggc 42001737

                                             
Query: 234      ctgccgctgctcaacaccgacctcgagac 262
                |||||||||||||||||||||||||||||
Sbjct: 42001736 ctgccgctgctcaacaccgacctcgagac 42001708



 Score = 46.1 bits (23), Expect = 0.058
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                       
Query: 216      cacgtggacatctccgcgctgccgctgctcaacaccgac 254
                ||||| |||||| |||  |||||||||||||||||||||
Sbjct: 42010704 cacgtcgacatccccgacctgccgctgctcaacaccgac 42010742
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>dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0431G06
          Length = 140466

 Score =  117 bits (59), Expect = 2e-23
 Identities = 86/95 (90%)
 Strand = Plus / Minus

                                                                          
Query: 77     catggaggtcgctgcggcgaagcccgtcctccgcgtggccgccgtctgcggctccctccg 136
              |||||||| ||| ||||||| ||||||| ||||||| |||||| ||||||||||||||||
Sbjct: 104091 catggaggccgcggcggcgaggcccgtcatccgcgtcgccgccatctgcggctccctccg 104032

                                                 
Query: 137    cagggcgtcctacaaccgcggcctcctccgcgccg 171
              || ||| ||||||||| ||||||||||||||||||
Sbjct: 104031 caaggcctcctacaacggcggcctcctccgcgccg 103997



 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                          
Query: 174    gcggaggtgtgcgaggagtcggttccggggatgcgcgtggagcacgtggacatctccgcg 233
              |||| |||||||||||||||  | |||||  ||||||| || ||||| ||||||||||  
Sbjct: 103873 gcgggggtgtgcgaggagtccatcccgggcctgcgcgtcgaccacgtcgacatctccggc 103814

                                           
Query: 234    ctgccgctgctcaacaccgacctcgagac 262
              |||||||||||||||||||||||||||||
Sbjct: 103813 ctgccgctgctcaacaccgacctcgagac 103785



 Score = 46.1 bits (23), Expect = 0.058
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                     
Query: 216    cacgtggacatctccgcgctgccgctgctcaacaccgac 254
              ||||| |||||| |||  |||||||||||||||||||||
Sbjct: 112781 cacgtcgacatccccgacctgccgctgctcaacaccgac 112819
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>ref|XM_480200.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 174

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 97  agcccgtcctccgcgtggccgccg 120
           ||||||||||||||||||||||||
Sbjct: 83  agcccgtcctccgcgtggccgccg 60
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>ref|NM_189784.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 612

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 81/100 (81%)
 Strand = Plus / Plus

                                                                       
Query: 155 cggcctcctccgcgccgcggcggaggtgtgcgaggagtcggttccggggatgcgcgtgga 214
           ||||||| ||||||||||   |||| | |||||||||||  | |||||||||    | ||
Sbjct: 78  cggcctcatccgcgccgccaaggagatatgcgaggagtccatcccggggatggttattga 137

                                                   
Query: 215 gcacgtggacatctccgcgctgccgctgctcaacaccgac 254
            ||||| |||||| |||  |||||||||||||||||||||
Sbjct: 138 ccacgtcgacatccccgacctgccgctgctcaacaccgac 177
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 97      agcccgtcctccgcgtggccgccg 120
               ||||||||||||||||||||||||
Sbjct: 3492269 agcccgtcctccgcgtggccgccg 3492292
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>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0498E12
          Length = 153523

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 97     agcccgtcctccgcgtggccgccg 120
              ||||||||||||||||||||||||
Sbjct: 125688 agcccgtcctccgcgtggccgccg 125711
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>dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0672D01
          Length = 146954

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 97    agcccgtcctccgcgtggccgccg 120
             ||||||||||||||||||||||||
Sbjct: 47986 agcccgtcctccgcgtggccgccg 48009
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>dbj|AK062729.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-E03, full
           insert sequence
          Length = 764

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 81/100 (81%)
 Strand = Plus / Plus

                                                                       
Query: 155 cggcctcctccgcgccgcggcggaggtgtgcgaggagtcggttccggggatgcgcgtgga 214
           ||||||| ||||||||||   |||| | |||||||||||  | |||||||||    | ||
Sbjct: 106 cggcctcatccgcgccgccaaggagatatgcgaggagtccatcccggggatggttattga 165

                                                   
Query: 215 gcacgtggacatctccgcgctgccgctgctcaacaccgac 254
            ||||| |||||| |||  |||||||||||||||||||||
Sbjct: 166 ccacgtcgacatccccgacctgccgctgctcaacaccgac 205
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 166    gcgccgcggcggaggtgtgcg 186
              |||||||||||||||||||||
Sbjct: 437759 gcgccgcggcggaggtgtgcg 437739
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>ref|NM_193024.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 863

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 152 ccgcggcctcctccgcgccg 171
           ||||||||||||||||||||
Sbjct: 286 ccgcggcctcctccgcgccg 267
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 238     cgctgctcaacaccgacctc 257
               ||||||||||||||||||||
Sbjct: 2944410 cgctgctcaacaccgacctc 2944391
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>gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence, complete
              sequence
          Length = 141582

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    cgcggcctcctccgcgccgc 172
              ||||||||||||||||||||
Sbjct: 104269 cgcggcctcctccgcgccgc 104288
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 153      cgcggcctcctccgcgccgc 172
                ||||||||||||||||||||
Sbjct: 32775272 cgcggcctcctccgcgccgc 32775253
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>ref|XM_532566.2| PREDICTED: Canis familiaris similar to Splicing factor, proline-and
           glutamine-rich (Polypyrimidine tract-binding
           protein-associated splicing factor) (PTB-associated
           splicing factor) (PSF) (DNA-binding p52/p100 complex,
           100 kDa subunit) (100-kDa DNA-pairing protein)
           (hPOMp100)... (LOC475340), mRNA
          Length = 2325

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 152 ccgcggcctcctccgcgccg 171
           ||||||||||||||||||||
Sbjct: 65  ccgcggcctcctccgcgccg 46
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>ref|XM_992201.1| PREDICTED: Mus musculus RIKEN cDNA 1700080G18 gene (1700080G18Rik),
           mRNA
          Length = 1521

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 152 ccgcggcctcctccgcgccg 171
           ||||||||||||||||||||
Sbjct: 606 ccgcggcctcctccgcgccg 587
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>ref|XM_001000195.1| PREDICTED: Mus musculus RIKEN cDNA 1700080G18 gene (1700080G18Rik),
           mRNA
          Length = 1593

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 152 ccgcggcctcctccgcgccg 171
           ||||||||||||||||||||
Sbjct: 574 ccgcggcctcctccgcgccg 555
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>emb|AL445238.12| Human DNA sequence from clone RP11-394A14 on chromosome 13 Contains a
             protein phosphatase 1, regulatory (inhibitor) subunit 2
             (PPP1R2) pseudogene, a novel gene and an olfactory
             receptor pseudogene, complete sequence
          Length = 174801

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    agaacccacccacctacccc 48
             ||||||||||||||||||||
Sbjct: 98053 agaacccacccacctacccc 98072
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 162     ctccgcgccgcggcggaggt 181
               ||||||||||||||||||||
Sbjct: 3352571 ctccgcgccgcggcggaggt 3352552
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>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 19      aacccgaagcagaacccacc 38
               ||||||||||||||||||||
Sbjct: 4933159 aacccgaagcagaacccacc 4933178
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   gctgccgctgctcaacaccg 252
             ||||||||||||||||||||
Sbjct: 21354 gctgccgctgctcaacaccg 21373
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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 149     caaccgcggcctcctccgcgccgc 172
               ||||||||||||||||| ||||||
Sbjct: 2668403 caaccgcggcctcctccacgccgc 2668380



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 149     caaccgcggcctcctccgcgccgc 172
               ||||||||||||||||| ||||||
Sbjct: 2082982 caaccgcggcctcctccacgccgc 2082959



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 149    caaccgcggcctcctccgcgccgc 172
              ||||||||||||||||| ||||||
Sbjct: 852714 caaccgcggcctcctccacgccgc 852737
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>gb|AC093538.2| Homo sapiens chromosome 5 clone RP11-99I23, complete sequence
          Length = 200500

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     cagaacccacccacctaccc 47
              ||||||||||||||||||||
Sbjct: 176577 cagaacccacccacctaccc 176558
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 152      ccgcggcctcctccgcgccg 171
                ||||||||||||||||||||
Sbjct: 27109447 ccgcggcctcctccgcgccg 27109466



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 152      ccgcggcctcctccgcgccg 171
                ||||||||||||||||||||
Sbjct: 27109313 ccgcggcctcctccgcgccg 27109332
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 152      ccgcggcctcctccgcgccg 171
                ||||||||||||||||||||
Sbjct: 25877456 ccgcggcctcctccgcgccg 25877475
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 153      cgcggcctcctccgcgccgc 172
                ||||||||||||||||||||
Sbjct: 32865782 cgcggcctcctccgcgccgc 32865763
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>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 19      aacccgaagcagaacccacc 38
               ||||||||||||||||||||
Sbjct: 4999702 aacccgaagcagaacccacc 4999721
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>dbj|AK120623.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152L18, full
           insert sequence
          Length = 1995

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 153 cgcggcctcctccgcgccgc 172
           ||||||||||||||||||||
Sbjct: 401 cgcggcctcctccgcgccgc 382
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>dbj|AK062899.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-F02, full
           insert sequence
          Length = 863

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 152 ccgcggcctcctccgcgccg 171
           ||||||||||||||||||||
Sbjct: 286 ccgcggcctcctccgcgccg 267
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>dbj|AP004009.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1339_F05
          Length = 132708

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   ccgcggcctcctccgcgccg 171
             ||||||||||||||||||||
Sbjct: 47904 ccgcggcctcctccgcgccg 47923
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>gb|AY104392.1| Zea mays PCO148550 mRNA sequence
          Length = 458

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 126 ggctccctccgcagggcgtc 145
           ||||||||||||||||||||
Sbjct: 377 ggctccctccgcagggcgtc 358
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 152      ccgcggcctcctccgcgccg 171
                ||||||||||||||||||||
Sbjct: 27035043 ccgcggcctcctccgcgccg 27035062



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 152      ccgcggcctcctccgcgccg 171
                ||||||||||||||||||||
Sbjct: 27034909 ccgcggcctcctccgcgccg 27034928
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>emb|AL713905.6|CNS07YQ5 Oryza sativa chromosome 12, . BAC OJ1584_D02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131300

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   ccgcggcctcctccgcgccg 171
             ||||||||||||||||||||
Sbjct: 46924 ccgcggcctcctccgcgccg 46905



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   ccgcggcctcctccgcgccg 171
             ||||||||||||||||||||
Sbjct: 46790 ccgcggcctcctccgcgccg 46771
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>emb|AL731887.5|CNS08C8R Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 145816

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   ccgcggcctcctccgcgccg 171
             ||||||||||||||||||||
Sbjct: 48342 ccgcggcctcctccgcgccg 48361



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   ccgcggcctcctccgcgccg 171
             ||||||||||||||||||||
Sbjct: 48208 ccgcggcctcctccgcgccg 48227
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>gb|AC134897.4| Mus musculus BAC clone RP23-459D9 from 6, complete sequence
          Length = 173574

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   ccgcggcctcctccgcgccg 171
             ||||||||||||||||||||
Sbjct: 34653 ccgcggcctcctccgcgccg 34634
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>gb|AC153632.2| Mus musculus 6 BAC RP23-450O1 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 182517

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 152    ccgcggcctcctccgcgccg 171
              ||||||||||||||||||||
Sbjct: 121293 ccgcggcctcctccgcgccg 121274


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,455,007
Number of Sequences: 3902068
Number of extensions: 1455007
Number of successful extensions: 34484
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33985
Number of HSP's gapped (non-prelim): 497
length of query: 273
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 251
effective length of database: 17,147,199,772
effective search space: 4303947142772
effective search space used: 4303947142772
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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