ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet98c06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK072559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132A10, full insert sequence Length = 1274 Score = 383 bits (193), Expect = e-103 Identities = 329/375 (87%), Gaps = 6/375 (1%) Strand = Plus / Plus Query: 60 atggcaacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 119 ||||| ||||||| ||||||||| |||||| || ||||||||||||||||| | ||| Sbjct: 96 atggcgacgctcaccgtcccctccgccgtcccgcccgtcgccgacgactgcgaccagctc 155 Query: 120 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggccac 179 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 156 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctggcccac 215 Query: 180 cgcgacgccgcgcagcgccgcgccatccgcaagcactacgccgacacctacggcgaggag 239 |||||||| |||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 216 cgcgacgcggcgcagcggcgcgccatccgccgcgcctacgccgacacctacggcgaggag 275 Query: 240 ctgccccggagcatcaccgacgagatctcaggcgacttcgagagggccgtgaccctgtgg 299 || | ||| |||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct: 276 ctcctccgcagcatcaccgacgagatctccggcgacttcgagagggccgtgatcctgtgg 335 Query: 300 acgctggaccccgcggagcgggacgcggtgctcgccaacgagaccgccaagaagtggcac 359 ||||||||||| |||||||| ||||||||||||||||||||| ||| | ||||||| || Sbjct: 336 acgctggacccggcggagcgcgacgcggtgctcgccaacgaggtcgcgaggaagtggtac 395 Query: 360 cc------ggngaaccccgtgctcgtcgagatcgcctgctcgcgcggctccgcgcagctc 413 || | || || |||||| ||||||||||| ||| |||||||| |||||||||| Sbjct: 396 ccagggagcgggagccgcgtgctggtcgagatcgcgtgcgcgcgcggccccgcgcagctg 455 Query: 414 ttcgccgtcaggcag 428 ||||| ||||||||| Sbjct: 456 ttcgcggtcaggcag 470
>emb|X98244.2|ZMANNP33 Z.mays mRNA for annexin p33 Length = 1277 Score = 327 bits (165), Expect = 2e-86 Identities = 313/360 (86%), Gaps = 2/360 (0%) Strand = Plus / Plus Query: 60 atggcaacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 119 |||||||||||||||||||| ||| || || || ||||||| ||||||||| | || Sbjct: 85 atggcaacgctcaaggtcccagccactgttcctcccgtcgccgatgactgcgaccagctg 144 Query: 120 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggccac 179 ||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 145 cgcaaagcattccaagggtggggcacgaacgaggcgctcatcatctccatcctcggccac 204 Query: 180 cgcgacgccgcgcagcgccgcgccatccgcaagcact-acgccgacacctacggcgagga 238 |||||||||||||||||||||||||||||| || || ||||||| ||||||||||||| Sbjct: 205 cgcgacgccgcgcagcgccgcgccatccgcc-gcgcttacgccgaggcctacggcgagga 263 Query: 239 gctgccccggagcatcaccgacgagatctcaggcgacttcgagagggccgtgaccctgtg 298 ||| | ||| |||||| ||||||||||| |||||||||||||||||||||| |||||| Sbjct: 264 gctcctccgctccatcacggacgagatctccggcgacttcgagagggccgtgatcctgtg 323 Query: 299 gacgctggaccccgcggagcgggacgcggtgctcgccaacgagaccgccaagaagtggca 358 |||||||||||| |||||||| ||||||||||| ||||||||| | || ||||||| | Sbjct: 324 gacgctggacccagcggagcgcgacgcggtgctggccaacgaggcggcgcggaagtggaa 383 Query: 359 cccggngaaccccgtgctcgtcgagatcgcctgctcgcgcggctccgcgcagctcttcgc 418 || | ||||| ||||||||||||||||||||| ||||| |||||||||| ||||||| Sbjct: 384 gcccgggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctccgcgcagatcttcgc 443
>gb|AY105151.1| Zea mays PCO072293 mRNA sequence Length = 1369 Score = 327 bits (165), Expect = 2e-86 Identities = 313/360 (86%), Gaps = 2/360 (0%) Strand = Plus / Plus Query: 60 atggcaacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 119 |||||||||||||||||||| ||| || || || ||||||| ||||||||| | || Sbjct: 102 atggcaacgctcaaggtcccagccactgttcctcccgtcgccgatgactgcgaccagctg 161 Query: 120 cgcaaggccttccaagggtggggcacgaacgaggcgctcatcatctccatcctgggccac 179 ||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 162 cgcaaagcattccaagggtggggcacgaacgaggcgctcatcatctccatcctcggccac 221 Query: 180 cgcgacgccgcgcagcgccgcgccatccgcaagcact-acgccgacacctacggcgagga 238 |||||||||||||||||||||||||||||| || || ||||||| ||||||||||||| Sbjct: 222 cgcgacgccgcgcagcgccgcgccatccgcc-gcgcttacgccgaggcctacggcgagga 280 Query: 239 gctgccccggagcatcaccgacgagatctcaggcgacttcgagagggccgtgaccctgtg 298 ||| | ||| |||||| ||||||||||| |||||||||||||||||||||| |||||| Sbjct: 281 gctcctccgctccatcacggacgagatctccggcgacttcgagagggccgtgatcctgtg 340 Query: 299 gacgctggaccccgcggagcgggacgcggtgctcgccaacgagaccgccaagaagtggca 358 |||||||||||| |||||||| ||||||||||| ||||||||| | || ||||||| | Sbjct: 341 gacgctggacccagcggagcgcgacgcggtgctggccaacgaggcggcgcggaagtggaa 400 Query: 359 cccggngaaccccgtgctcgtcgagatcgcctgctcgcgcggctccgcgcagctcttcgc 418 || | ||||| ||||||||||||||||||||| ||||| |||||||||| ||||||| Sbjct: 401 gcccgggaaccgtgtgctcgtcgagatcgcctgcacgcgcacctccgcgcagatcttcgc 460
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 200 bits (101), Expect = 3e-48 Identities = 137/149 (91%) Strand = Plus / Plus Query: 133 aagggtggggcacgaacgaggcgctcatcatctccatcctgggccaccgcgacgccgcgc 192 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct: 6261826 aagggtggggcacgaacgaggcgctcatcatctccatcctggcccaccgcgacgcggcgc 6261885 Query: 193 agcgccgcgccatccgcaagcactacgccgacacctacggcgaggagctgccccggagca 252 |||| |||||||||||| ||||||||||||||||||||||||||| | ||| |||| Sbjct: 6261886 agcggcgcgccatccgccgcgcctacgccgacacctacggcgaggagctcctccgcagca 6261945 Query: 253 tcaccgacgagatctcaggcgacttcgag 281 |||||||||||||||| |||||||||||| Sbjct: 6261946 tcaccgacgagatctccggcgacttcgag 6261974 Score = 121 bits (61), Expect = 2e-24 Identities = 131/155 (84%), Gaps = 6/155 (3%) Strand = Plus / Plus Query: 280 agagggccgtgaccctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacg 339 |||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct: 6262084 agagggccgtgatcctgtggacgctggacccggcggagcgcgacgcggtgctcgccaacg 6262143 Query: 340 agaccgccaagaagtggcaccc------ggngaaccccgtgctcgtcgagatcgcctgct 393 || ||| | ||||||| |||| | || || |||||| ||||||||||| ||| Sbjct: 6262144 aggtcgcgaggaagtggtacccagggagcgggagccgcgtgctggtcgagatcgcgtgcg 6262203 Query: 394 cgcgcggctccgcgcagctcttcgccgtcaggcag 428 |||||||| |||||||||| ||||| ||||||||| Sbjct: 6262204 cgcgcggccccgcgcagctgttcgcggtcaggcag 6262238 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 60 atggcaacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 119 ||||| ||||||| ||||||||| |||||| || ||||||||||||||||| | ||| Sbjct: 6261629 atggcgacgctcaccgtcccctccgccgtcccgcccgtcgccgacgactgcgaccagctc 6261688 Query: 120 cgcaaggccttccaagg 136 ||||||||||||||||| Sbjct: 6261689 cgcaaggccttccaagg 6261705
>dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0516A04 Length = 145107 Score = 200 bits (101), Expect = 3e-48 Identities = 137/149 (91%) Strand = Plus / Plus Query: 133 aagggtggggcacgaacgaggcgctcatcatctccatcctgggccaccgcgacgccgcgc 192 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct: 55902 aagggtggggcacgaacgaggcgctcatcatctccatcctggcccaccgcgacgcggcgc 55961 Query: 193 agcgccgcgccatccgcaagcactacgccgacacctacggcgaggagctgccccggagca 252 |||| |||||||||||| ||||||||||||||||||||||||||| | ||| |||| Sbjct: 55962 agcggcgcgccatccgccgcgcctacgccgacacctacggcgaggagctcctccgcagca 56021 Query: 253 tcaccgacgagatctcaggcgacttcgag 281 |||||||||||||||| |||||||||||| Sbjct: 56022 tcaccgacgagatctccggcgacttcgag 56050 Score = 121 bits (61), Expect = 2e-24 Identities = 131/155 (84%), Gaps = 6/155 (3%) Strand = Plus / Plus Query: 280 agagggccgtgaccctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacg 339 |||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct: 56160 agagggccgtgatcctgtggacgctggacccggcggagcgcgacgcggtgctcgccaacg 56219 Query: 340 agaccgccaagaagtggcaccc------ggngaaccccgtgctcgtcgagatcgcctgct 393 || ||| | ||||||| |||| | || || |||||| ||||||||||| ||| Sbjct: 56220 aggtcgcgaggaagtggtacccagggagcgggagccgcgtgctggtcgagatcgcgtgcg 56279 Query: 394 cgcgcggctccgcgcagctcttcgccgtcaggcag 428 |||||||| |||||||||| ||||| ||||||||| Sbjct: 56280 cgcgcggccccgcgcagctgttcgcggtcaggcag 56314 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 60 atggcaacgctcaaggtcccctccaacgtccccgccctcgccgacgactgcgacaacctc 119 ||||| ||||||| ||||||||| |||||| || ||||||||||||||||| | ||| Sbjct: 55705 atggcgacgctcaccgtcccctccgccgtcccgcccgtcgccgacgactgcgaccagctc 55764 Query: 120 cgcaaggccttccaagg 136 ||||||||||||||||| Sbjct: 55765 cgcaaggccttccaagg 55781
>ref|XM_467846.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1223 Score = 196 bits (99), Expect = 4e-47 Identities = 251/302 (83%) Strand = Plus / Plus Query: 97 tcgccgacgactgcgacaacctccgcaaggccttccaagggtggggcacgaacgaggcgc 156 ||||||| |||||||| | || |||||||| ||| |||||||||||||||||||| || Sbjct: 153 tcgccgaggactgcgagcagctgcgcaaggcgttcaaagggtggggcacgaacgagaagc 212 Query: 157 tcatcatctccatcctgggccaccgcgacgccgcgcagcgccgcgccatccgcaagcact 216 |||||||||||||||| | |||||||||||| ||||||||||| || |||||| || Sbjct: 213 tcatcatctccatcctcgcccaccgcgacgcggcgcagcgccgggcgatccgccgcgcct 272 Query: 217 acgccgacacctacggcgaggagctgccccggagcatcaccgacgagatctcaggcgact 276 ||||||| | |||||||||||||||| ||| | ||| |||||||||| ||| | | Sbjct: 273 acgccgaggcgtacggcgaggagctgctccgcgccctcaacgacgagatccacggcaaat 332 Query: 277 tcgagagggccgtgaccctgtggacgctggaccccgcggagcgggacgcggtgctcgcca 336 |||||||||| |||| || ||||||||||||||| |||||||||||||||||||| || | Sbjct: 333 tcgagagggcggtgatccagtggacgctggacccggcggagcgggacgcggtgctggcga 392 Query: 337 acgagaccgccaagaagtggcacccggngaaccccgtgctcgtcgagatcgcctgctcgc 396 ||||| || | |||||||||||||| | || || ||||||||||||||| ||| ||| Sbjct: 393 acgaggaggcgaggaagtggcacccggggggccgcgcgctcgtcgagatcgcgtgcacgc 452 Query: 397 gc 398 || Sbjct: 453 gc 454
>dbj|AK101787.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065F07, full insert sequence Length = 1223 Score = 188 bits (95), Expect = 1e-44 Identities = 250/302 (82%) Strand = Plus / Plus Query: 97 tcgccgacgactgcgacaacctccgcaaggccttccaagggtggggcacgaacgaggcgc 156 ||||||| |||||||| | || |||||||| ||| |||||||||||||||||||| || Sbjct: 153 tcgccgaggactgcgagcagctgcgcaaggcgttcaaagggtggggcacgaacgagaagc 212 Query: 157 tcatcatctccatcctgggccaccgcgacgccgcgcagcgccgcgccatccgcaagcact 216 |||||||||||||||| | |||||||||||| ||||||||||| || |||||| || Sbjct: 213 tcatcatctccatcctcgcccaccgcgacgcggcgcagcgccgggcgatccgccgcgcct 272 Query: 217 acgccgacacctacggcgaggagctgccccggagcatcaccgacgagatctcaggcgact 276 ||||||| | |||||||||||||||| ||| | ||| |||||||||| ||| | | Sbjct: 273 acgccgaggcgtacggcgaggagctgctccgcgccctcaacgacgagatccacggcaaat 332 Query: 277 tcgagagggccgtgaccctgtggacgctggaccccgcggagcgggacgcggtgctcgcca 336 |||||||||| |||| || ||||||||||||||| |||||||||||||||||||| || Sbjct: 333 tcgagagggcggtgatccagtggacgctggacccggcggagcgggacgcggtgctggcgg 392 Query: 337 acgagaccgccaagaagtggcacccggngaaccccgtgctcgtcgagatcgcctgctcgc 396 ||||| || | |||||||||||||| | || || ||||||||||||||| ||| ||| Sbjct: 393 acgaggaggcgaggaagtggcacccggggggccgcgcgctcgtcgagatcgcgtgcacgc 452 Query: 397 gc 398 || Sbjct: 453 gc 454
>gb|AC169375.4| Sorghum bicolor clone SB_BBc0020O07, complete sequence Length = 117931 Score = 147 bits (74), Expect = 3e-32 Identities = 130/149 (87%) Strand = Plus / Minus Query: 280 agagggccgtgaccctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacg 339 |||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||| Sbjct: 48489 agagggccgtgatcctgtggacgctggacccagcggagcgcgacgcggtgctggccaacg 48430 Query: 340 agaccgccaagaagtggcacccggngaaccccgtgctcgtcgagatcgcctgctcgcgcg 399 || | || ||||||||| || | ||||| |||||||||||||||||||||| ||||| Sbjct: 48429 aggcggcgcggaagtggcagcccgggaaccgcgtgctcgtcgagatcgcctgcacgcgca 48370 Query: 400 gctccgcgcagctcttcgccgtcaggcag 428 |||||||||| ||||||| | ||||||| Sbjct: 48369 cctccgcgcaggtcttcgcggccaggcag 48341 Score = 85.7 bits (43), Expect = 1e-13 Identities = 88/103 (85%) Strand = Plus / Minus Query: 179 ccgcgacgccgcgcagcgccgcgccatccgcaagcactacgccgacacctacggcgagga 238 ||||||||||||||||||||||||||||||| ||||||||| || |||||||||| Sbjct: 48695 ccgcgacgccgcgcagcgccgcgccatccgccgcgcctacgccgaggcccacggcgagga 48636 Query: 239 gctgccccggagcatcaccgacgagatctcaggcgacttcgag 281 ||| | ||| |||||| ||||||||||| |||||||||||| Sbjct: 48635 gctcctccgctccatcacggacgagatctccggcgacttcgag 48593
>gb|AY105105.1| Zea mays PCO122403 mRNA sequence Length = 1401 Score = 111 bits (56), Expect = 2e-21 Identities = 107/124 (86%) Strand = Plus / Plus Query: 86 cgtccccgccctcgccgacgactgcgacaacctccgcaaggccttccaagggtggggcac 145 |||||| ||| ||||||| |||||||| | |||| |||||| ||| |||| |||||||| Sbjct: 252 cgtcccggccgtcgccgaggactgcgagcagctccacaaggctttcgaaggttggggcac 311 Query: 146 gaacgaggcgctcatcatctccatcctgggccaccgcgacgccgcgcagcgccgcgccat 205 |||||| ||| |||||||||||||||| ||||||| ||||||||||||||||||| || Sbjct: 312 caacgagaagctgatcatctccatcctggcccaccgcaacgccgcgcagcgccgcgcgat 371 Query: 206 ccgc 209 |||| Sbjct: 372 ccgc 375 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 276 ttcgagagggccgtgaccctgtggacgctggaccccgcggagcgggacgcggtgctcgcc 335 ||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||| || Sbjct: 442 ttcgagagggcggtgatcctgtggacgctggaccccgcggagagggacgcggtgctggcg 501 Query: 336 aacgag 341 |||||| Sbjct: 502 aacgag 507
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 99.6 bits (50), Expect = 7e-18 Identities = 95/110 (86%) Strand = Plus / Minus Query: 134 agggtggggcacgaacgaggcgctcatcatctccatcctgggccaccgcgacgccgcgca 193 ||||||||||||||||||| |||||||||||||||||| | |||||||||||| ||||| Sbjct: 31718644 agggtggggcacgaacgagaagctcatcatctccatcctcgcccaccgcgacgcggcgca 31718585 Query: 194 gcgccgcgccatccgcaagcactacgccgacacctacggcgaggagctgc 243 |||||| || |||||| ||||||||| | |||||||||||||||| Sbjct: 31718584 gcgccgggcgatccgccgcgcctacgccgaggcgtacggcgaggagctgc 31718535 Score = 95.6 bits (48), Expect = 1e-16 Identities = 101/119 (84%) Strand = Plus / Minus Query: 280 agagggccgtgaccctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacg 339 ||||||| |||| || ||||||||||||||| |||||||||||||||||||| || |||| Sbjct: 31718402 agagggcggtgatccagtggacgctggacccggcggagcgggacgcggtgctggcgaacg 31718343 Query: 340 agaccgccaagaagtggcacccggngaaccccgtgctcgtcgagatcgcctgctcgcgc 398 || || | |||||||||||||| | || || ||||||||||||||| ||| ||||| Sbjct: 31718342 aggaggcgaggaagtggcacccggggggccgcgcgctcgtcgagatcgcgtgcacgcgc 31718284
>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0627E03 Length = 159861 Score = 99.6 bits (50), Expect = 7e-18 Identities = 95/110 (86%) Strand = Plus / Minus Query: 134 agggtggggcacgaacgaggcgctcatcatctccatcctgggccaccgcgacgccgcgca 193 ||||||||||||||||||| |||||||||||||||||| | |||||||||||| ||||| Sbjct: 14442 agggtggggcacgaacgagaagctcatcatctccatcctcgcccaccgcgacgcggcgca 14383 Query: 194 gcgccgcgccatccgcaagcactacgccgacacctacggcgaggagctgc 243 |||||| || |||||| ||||||||| | |||||||||||||||| Sbjct: 14382 gcgccgggcgatccgccgcgcctacgccgaggcgtacggcgaggagctgc 14333 Score = 95.6 bits (48), Expect = 1e-16 Identities = 101/119 (84%) Strand = Plus / Minus Query: 280 agagggccgtgaccctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacg 339 ||||||| |||| || ||||||||||||||| |||||||||||||||||||| || |||| Sbjct: 14200 agagggcggtgatccagtggacgctggacccggcggagcgggacgcggtgctggcgaacg 14141 Query: 340 agaccgccaagaagtggcacccggngaaccccgtgctcgtcgagatcgcctgctcgcgc 398 || || | |||||||||||||| | || || ||||||||||||||| ||| ||||| Sbjct: 14140 aggaggcgaggaagtggcacccggggggccgcgcgctcgtcgagatcgcgtgcacgcgc 14082
>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1288_G09 Length = 109672 Score = 99.6 bits (50), Expect = 7e-18 Identities = 95/110 (86%) Strand = Plus / Minus Query: 134 agggtggggcacgaacgaggcgctcatcatctccatcctgggccaccgcgacgccgcgca 193 ||||||||||||||||||| |||||||||||||||||| | |||||||||||| ||||| Sbjct: 98431 agggtggggcacgaacgagaagctcatcatctccatcctcgcccaccgcgacgcggcgca 98372 Query: 194 gcgccgcgccatccgcaagcactacgccgacacctacggcgaggagctgc 243 |||||| || |||||| ||||||||| | |||||||||||||||| Sbjct: 98371 gcgccgggcgatccgccgcgcctacgccgaggcgtacggcgaggagctgc 98322 Score = 95.6 bits (48), Expect = 1e-16 Identities = 101/119 (84%) Strand = Plus / Minus Query: 280 agagggccgtgaccctgtggacgctggaccccgcggagcgggacgcggtgctcgccaacg 339 ||||||| |||| || ||||||||||||||| |||||||||||||||||||| || |||| Sbjct: 98189 agagggcggtgatccagtggacgctggacccggcggagcgggacgcggtgctggcgaacg 98130 Query: 340 agaccgccaagaagtggcacccggngaaccccgtgctcgtcgagatcgcctgctcgcgc 398 || || | |||||||||||||| | || || ||||||||||||||| ||| ||||| Sbjct: 98129 aggaggcgaggaagtggcacccggggggccgcgcgctcgtcgagatcgcgtgcacgcgc 98071
>gb|AF542967.1| Triticum aestivum annexin P35-like mRNA, partial sequence Length = 766 Score = 95.6 bits (48), Expect = 1e-16 Identities = 110/131 (83%) Strand = Plus / Plus Query: 298 ggacgctggaccccgcggagcgggacgcggtgctcgccaacgagaccgccaagaagtggc 357 ||||||||||||| |||||||||||||| | ||| ||| |||| ||||||||||||| Sbjct: 5 ggacgctggacccggcggagcgggacgcagagctggccggcgaggaggccaagaagtggc 64 Query: 358 acccggngaaccccgtgctcgtcgagatcgcctgctcgcgcggctccgcgcagctcttcg 417 | |||| | || || |||||| |||||||||||| ||||| | ||||||||||||||| Sbjct: 65 agccggggggccgcgcgctcgtggagatcgcctgcgcgcgcacccccgcgcagctcttcg 124 Query: 418 ccgtcaggcag 428 ||| ||||||| Sbjct: 125 ccgccaggcag 135
>emb|X98245.1|ZMANNP35 Z.mays mRNA for annexin p35 Length = 1257 Score = 95.6 bits (48), Expect = 1e-16 Identities = 105/124 (84%) Strand = Plus / Plus Query: 86 cgtccccgccctcgccgacgactgcgacaacctccgcaaggccttccaagggtggggcac 145 |||||| ||| ||||||| |||||||| | |||| |||||||||| |||| |||||||| Sbjct: 158 cgtcccggccgtcgccgaggactgcgagcagctccacaaggccttcgaaggttggggcac 217 Query: 146 gaacgaggcgctcatcatctccatcctgggccaccgcgacgccgcgcagcgccgcgccat 205 |||||| || |||||||||||||||| ||||||| ||||||||||| |||||| || Sbjct: 218 caacgagaaactgatcatctccatcctggcccaccgcaacgccgcgcaggcccgcgcgat 277 Query: 206 ccgc 209 |||| Sbjct: 278 ccgc 281 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 276 ttcgagagggccgtgaccctgtggacgctggaccccgcggagcgggacgcggtgctcgcc 335 ||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||| || Sbjct: 348 ttcgagagggcggtgatcctgtggacgctggaccccgcggagagggacgcggtgctggcg 407 Query: 336 aacgag 341 |||||| Sbjct: 408 aacgag 413
>ref|XM_365261.1| Magnaporthe grisea 70-15 predicted protein (MG01963.4) partial mRNA Length = 603 Score = 46.1 bits (23), Expect = 0.093 Identities = 23/23 (100%) Strand = Plus / Plus Query: 34 caccggcaggcaggcacccggtc 56 ||||||||||||||||||||||| Sbjct: 402 caccggcaggcaggcacccggtc 424
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 180 cgcgacgccgcgcagcgccgcgccat 205 |||| ||||||||||||||||||||| Sbjct: 2138425 cgcgtcgccgcgcagcgccgcgccat 2138450
>gb|U75930.2|OPU75930 Orgyia pseudotsugata multicapsid nucleopolyhedrovirus, complete genome Length = 131995 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 181 gcgacgccgcgcagcgccgcgc 202 |||||||||||||||||||||| Sbjct: 41779 gcgacgccgcgcagcgccgcgc 41758
>dbj|BA000013.4| Mesorhizobium loti MAFF303099 pMLa DNA, cpmplete genome Length = 351911 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 165 tccatcctgggccaccgcgacgccgc 190 |||||||||| ||||||||||||||| Sbjct: 81669 tccatcctggtccaccgcgacgccgc 81694
>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence Length = 142376 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 185 cgccgcgcagcgccgcgccatccgc 209 |||||||| |||||||||||||||| Sbjct: 44848 cgccgcgccgcgccgcgccatccgc 44872
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 ccgcgcagcgccgcgccatcc 207 ||||||||||||||||||||| Sbjct: 40183 ccgcgcagcgccgcgccatcc 40203
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 cgcgacgccgcgcagcgccgc 200 ||||||||||||||||||||| Sbjct: 62205 cgcgacgccgcgcagcgccgc 62225
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 182 cgacgccgcgcagcgccgcgccatc 206 |||||||||||||| |||||||||| Sbjct: 978422 cgacgccgcgcagctccgcgccatc 978398
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 180 cgcgacgccgcgcagcgccgc 200 ||||||||||||||||||||| Sbjct: 446565 cgcgacgccgcgcagcgccgc 446545
>ref|NM_204293.1| Gallus gallus calcium channel, voltage-dependent, L type, alpha 1B subunit (CACNA1B), mRNA Length = 7966 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 cctgggccaccgcgacgccgc 190 ||||||||||||||||||||| Sbjct: 6904 cctgggccaccgcgacgccgc 6924
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 ccgcgcagcgccgcgccatcc 207 ||||||||||||||||||||| Sbjct: 11253825 ccgcgcagcgccgcgccatcc 11253845 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 caacgtccccgccctcgccgacga 106 ||||||||||||| |||||||||| Sbjct: 25744572 caacgtccccgccttcgccgacga 25744595
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 330 ctcgccaacgagaccgccaag 350 ||||||||||||||||||||| Sbjct: 2896182 ctcgccaacgagaccgccaag 2896162
>gb|AF173015.1|AF173015 Gallus gallus N-type calcium channel alpha-1B cdB4 variant (CACHA1B) mRNA, complete cds Length = 7887 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 cctgggccaccgcgacgccgc 190 ||||||||||||||||||||| Sbjct: 6791 cctgggccaccgcgacgccgc 6811
>gb|AF173014.1|AF173014 Gallus gallus N-type calcium channel alpha-1B cdB3 variant (CACHA1B) mRNA, complete cds Length = 7892 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 cctgggccaccgcgacgccgc 190 ||||||||||||||||||||| Sbjct: 6796 cctgggccaccgcgacgccgc 6816
>gb|AF173013.1|AF173013 Gallus gallus N-type calcium channel alpha-1B cdB2 variant (CACHA1B) mRNA, complete cds Length = 7995 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 cctgggccaccgcgacgccgc 190 ||||||||||||||||||||| Sbjct: 6899 cctgggccaccgcgacgccgc 6919
>gb|AF173012.1|AF173012 Gallus gallus N-type calcium channel alpha-1B cdB1 variant (CACHA1B) mRNA, complete cds Length = 8000 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 cctgggccaccgcgacgccgc 190 ||||||||||||||||||||| Sbjct: 6904 cctgggccaccgcgacgccgc 6924
>gb|AF173017.1|AF173017 Gallus gallus N-type calcium channel alpha-1B cdB6 variant (CACHA1B) mRNA, complete cds Length = 7962 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 cctgggccaccgcgacgccgc 190 ||||||||||||||||||||| Sbjct: 6866 cctgggccaccgcgacgccgc 6886
>gb|AF173019.1|AF173019 Gallus gallus N-type calcium channel alpha-1B cdB8 variant (CACHA1B) mRNA, complete cds Length = 7920 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 cctgggccaccgcgacgccgc 190 ||||||||||||||||||||| Sbjct: 6824 cctgggccaccgcgacgccgc 6844
>gb|AF173018.1|AF173018 Gallus gallus N-type calcium channel alpha-1B cdB7 variant (CACHA1B) mRNA, complete cds Length = 7925 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 cctgggccaccgcgacgccgc 190 ||||||||||||||||||||| Sbjct: 6829 cctgggccaccgcgacgccgc 6849
>gb|AF173016.1|AF173016 Gallus gallus N-type calcium channel alpha-1B cdB5 variant (CACHA1B) mRNA, complete cds Length = 7967 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 cctgggccaccgcgacgccgc 190 ||||||||||||||||||||| Sbjct: 6871 cctgggccaccgcgacgccgc 6891
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 ccgcgcagcgccgcgccatcc 207 ||||||||||||||||||||| Sbjct: 11333014 ccgcgcagcgccgcgccatcc 11333034 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 caacgtccccgccctcgccgacga 106 ||||||||||||| |||||||||| Sbjct: 26063242 caacgtccccgccttcgccgacga 26063265
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgacgccgcgcagcgccgcg 201 |||||||||||||||||||| Sbjct: 398619 cgacgccgcgcagcgccgcg 398600
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 cgcgacgccgcgcagcgccgcgcc 203 |||| ||||||||||||||||||| Sbjct: 818197 cgcgtcgccgcgcagcgccgcgcc 818220
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 182 cgacgccgcgcagcgccgcgccat 205 ||||| |||||||||||||||||| Sbjct: 5093055 cgacggcgcgcagcgccgcgccat 5093078
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 acgtccccgccctcgccgac 104 |||||||||||||||||||| Sbjct: 247057 acgtccccgccctcgccgac 247038
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 gacgccgcgcagcgccgcgccatc 206 ||||||||||||||||||| |||| Sbjct: 3102973 gacgccgcgcagcgccgcggcatc 3102950
>gb|AE005970.1| Caulobacter crescentus CB15 section 296 of 359 of the complete genome Length = 12680 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 200 cgccatccgcaagcactacgccga 223 |||||||||||||| ||||||||| Sbjct: 726 cgccatccgcaagctctacgccga 703
>gb|AC125783.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0039K08, complete sequence Length = 122163 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 caacgtccccgccctcgccgacga 106 ||||||||||||| |||||||||| Sbjct: 56915 caacgtccccgccttcgccgacga 56938
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 cgcgacgccgcgcagcgccgcgcc 203 |||| ||||||||||||||||||| Sbjct: 1711686 cgcgtcgccgcgcagcgccgcgcc 1711709
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 ccatccgcaagcactacgccgaca 225 |||||||||||| ||||||||||| Sbjct: 1898660 ccatccgcaagctctacgccgaca 1898683
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 cctccgcaaggccttccaag 135 |||||||||||||||||||| Sbjct: 986455 cctccgcaaggccttccaag 986474
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 cggcaccggcaggcaggcacccgg 54 |||||||||||||||||| ||||| Sbjct: 2741828 cggcaccggcaggcaggctcccgg 2741805
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 caccgcgacgccgcgcagcg 196 |||||||||||||||||||| Sbjct: 4897709 caccgcgacgccgcgcagcg 4897690
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 ggccaccgcgacgccgcgcagcgc 197 |||||||||| ||||||||||||| Sbjct: 4026499 ggccaccgcgccgccgcgcagcgc 4026476
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 atccgcaagcactacgccga 223 |||||||||||||||||||| Sbjct: 1732392 atccgcaagcactacgccga 1732411
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 gacgccgcgcagcgccgcgccatc 206 ||||||||||||||||||| |||| Sbjct: 3110199 gacgccgcgcagcgccgcggcatc 3110176
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 308 ccccgcggagcgggacgcggtgctcgcc 335 |||||||| |||||||||||||||||| Sbjct: 2157010 ccccgcggcccgggacgcggtgctcgcc 2156983 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,226,523 Number of Sequences: 3902068 Number of extensions: 2226523 Number of successful extensions: 49407 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46311 Number of HSP's gapped (non-prelim): 3074 length of query: 428 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 406 effective length of database: 17,147,199,772 effective search space: 6961763107432 effective search space used: 6961763107432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
