ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet98b11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190406.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 573 Score = 159 bits (80), Expect = 5e-36 Identities = 139/158 (87%), Gaps = 3/158 (1%) Strand = Plus / Plus Query: 88 gagccgctgctcccggagttctcgggcgggcacggcggcggggcgtcggtctccggcgcg 147 ||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||||| Sbjct: 58 gagccgctgctgccggagttctctggcgg---cgggcatggggcgtcggtctccggcgcg 114 Query: 148 gtgttcaacctgtccacgagcatcatcggcgccggcatcatgtcgatcccggcggcaatg 207 ||||||||| |||| |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 115 gtgttcaacgtgtcgacgagcatcatcggcgccggaatcatgtcaatcccggcggcaatg 174 Query: 208 cgcgtcctcggggtcgtccccgcgctcgtcctcatcgc 245 || || ||||| || ||||||||||| |||||||||| Sbjct: 175 cgggtgctcggtgtgctccccgcgctcctcctcatcgc 212
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 159 bits (80), Expect = 5e-36 Identities = 139/158 (87%), Gaps = 3/158 (1%) Strand = Plus / Minus Query: 88 gagccgctgctcccggagttctcgggcgggcacggcggcggggcgtcggtctccggcgcg 147 ||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||||| Sbjct: 35320340 gagccgctgctgccggagttctctggcgg---cgggcatggggcgtcggtctccggcgcg 35320284 Query: 148 gtgttcaacctgtccacgagcatcatcggcgccggcatcatgtcgatcccggcggcaatg 207 ||||||||| |||| |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 35320283 gtgttcaacgtgtcgacgagcatcatcggcgccggaatcatgtcaatcccggcggcaatg 35320224 Query: 208 cgcgtcctcggggtcgtccccgcgctcgtcctcatcgc 245 || || ||||| || ||||||||||| |||||||||| Sbjct: 35320223 cgggtgctcggtgtgctccccgcgctcctcctcatcgc 35320186 Score = 83.8 bits (42), Expect = 2e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 141 cggcgcggtgttcaacctgtccacgagcatcatcggcgccggcatcatgtcgatcccggc 200 |||||||||||||||| |||| |||||| || | |||||||| ||||||||||||||||| Sbjct: 35316291 cggcgcggtgttcaacgtgtcgacgagcgtcgtgggcgccgggatcatgtcgatcccggc 35316232 Query: 201 ggcaatgcgcgtcctcgg 218 ||| ||||| || ||||| Sbjct: 35316231 ggccatgcgggtgctcgg 35316214
>dbj|AP003315.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439E11 Length = 146083 Score = 159 bits (80), Expect = 5e-36 Identities = 139/158 (87%), Gaps = 3/158 (1%) Strand = Plus / Minus Query: 88 gagccgctgctcccggagttctcgggcgggcacggcggcggggcgtcggtctccggcgcg 147 ||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||||| Sbjct: 84201 gagccgctgctgccggagttctctggcgg---cgggcatggggcgtcggtctccggcgcg 84145 Query: 148 gtgttcaacctgtccacgagcatcatcggcgccggcatcatgtcgatcccggcggcaatg 207 ||||||||| |||| |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 84144 gtgttcaacgtgtcgacgagcatcatcggcgccggaatcatgtcaatcccggcggcaatg 84085 Query: 208 cgcgtcctcggggtcgtccccgcgctcgtcctcatcgc 245 || || ||||| || ||||||||||| |||||||||| Sbjct: 84084 cgggtgctcggtgtgctccccgcgctcctcctcatcgc 84047 Score = 83.8 bits (42), Expect = 2e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 141 cggcgcggtgttcaacctgtccacgagcatcatcggcgccggcatcatgtcgatcccggc 200 |||||||||||||||| |||| |||||| || | |||||||| ||||||||||||||||| Sbjct: 80152 cggcgcggtgttcaacgtgtcgacgagcgtcgtgggcgccgggatcatgtcgatcccggc 80093 Query: 201 ggcaatgcgcgtcctcgg 218 ||| ||||| || ||||| Sbjct: 80092 ggccatgcgggtgctcgg 80075
>dbj|AK102220.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087L14, full insert sequence Length = 1580 Score = 159 bits (80), Expect = 5e-36 Identities = 139/158 (87%), Gaps = 3/158 (1%) Strand = Plus / Plus Query: 88 gagccgctgctcccggagttctcgggcgggcacggcggcggggcgtcggtctccggcgcg 147 ||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||||| Sbjct: 85 gagccgctgctgccggagttctctggcgg---cgggcatggggcgtcggtctccggcgcg 141 Query: 148 gtgttcaacctgtccacgagcatcatcggcgccggcatcatgtcgatcccggcggcaatg 207 ||||||||| |||| |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 142 gtgttcaacgtgtcgacgagcatcatcggcgccggaatcatgtcaatcccggcggcaatg 201 Query: 208 cgcgtcctcggggtcgtccccgcgctcgtcctcatcgc 245 || || ||||| || ||||||||||| |||||||||| Sbjct: 202 cgggtgctcggtgtgctccccgcgctcctcctcatcgc 239
>ref|XM_467580.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1935 Score = 87.7 bits (44), Expect = 2e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 137 tctccggcgcggtgttcaacctgtccacgagcatcatcggcgccggcatcatgtcgatcc 196 |||||||||||||||||||||||||||| | |||| ||||||||||||||||| || ||| Sbjct: 318 tctccggcgcggtgttcaacctgtccaccaccatcgtcggcgccggcatcatggcgctcc 377 Query: 197 cggc 200 |||| Sbjct: 378 cggc 381
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 87.7 bits (44), Expect = 2e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 137 tctccggcgcggtgttcaacctgtccacgagcatcatcggcgccggcatcatgtcgatcc 196 |||||||||||||||||||||||||||| | |||||||||||| ||||||||| || ||| Sbjct: 15834196 tctccggcgcggtgttcaacctgtccaccaccatcatcggcgcgggcatcatggcgctcc 15834255 Query: 197 cggc 200 |||| Sbjct: 15834256 cggc 15834259
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 87.7 bits (44), Expect = 2e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 137 tctccggcgcggtgttcaacctgtccacgagcatcatcggcgccggcatcatgtcgatcc 196 |||||||||||||||||||||||||||| | |||||||||||| ||||||||| || ||| Sbjct: 24369115 tctccggcgcggtgttcaacctgtccaccaccatcatcggcgcgggcatcatggcgctcc 24369174 Query: 197 cggc 200 |||| Sbjct: 24369175 cggc 24369178
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 87.7 bits (44), Expect = 2e-14 Identities = 59/64 (92%) Strand = Plus / Minus Query: 137 tctccggcgcggtgttcaacctgtccacgagcatcatcggcgccggcatcatgtcgatcc 196 |||||||||||||||||||||||||||| | |||| ||||||||||||||||| || ||| Sbjct: 30281626 tctccggcgcggtgttcaacctgtccaccaccatcgtcggcgccggcatcatggcgctcc 30281567 Query: 197 cggc 200 |||| Sbjct: 30281566 cggc 30281563
>dbj|AP005747.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0039E17 Length = 144126 Score = 87.7 bits (44), Expect = 2e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 137 tctccggcgcggtgttcaacctgtccacgagcatcatcggcgccggcatcatgtcgatcc 196 |||||||||||||||||||||||||||| | |||||||||||| ||||||||| || ||| Sbjct: 119382 tctccggcgcggtgttcaacctgtccaccaccatcatcggcgcgggcatcatggcgctcc 119441 Query: 197 cggc 200 |||| Sbjct: 119442 cggc 119445
>dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1579_C03 Length = 122851 Score = 87.7 bits (44), Expect = 2e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 137 tctccggcgcggtgttcaacctgtccacgagcatcatcggcgccggcatcatgtcgatcc 196 |||||||||||||||||||||||||||| | |||||||||||| ||||||||| || ||| Sbjct: 102308 tctccggcgcggtgttcaacctgtccaccaccatcatcggcgcgggcatcatggcgctcc 102367 Query: 197 cggc 200 |||| Sbjct: 102368 cggc 102371
>dbj|AP005284.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1121A12 Length = 138796 Score = 87.7 bits (44), Expect = 2e-14 Identities = 59/64 (92%) Strand = Plus / Minus Query: 137 tctccggcgcggtgttcaacctgtccacgagcatcatcggcgccggcatcatgtcgatcc 196 |||||||||||||||||||||||||||| | |||| ||||||||||||||||| || ||| Sbjct: 82543 tctccggcgcggtgttcaacctgtccaccaccatcgtcggcgccggcatcatggcgctcc 82484 Query: 197 cggc 200 |||| Sbjct: 82483 cggc 82480
>dbj|AK109890.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-E04, full insert sequence Length = 1514 Score = 87.7 bits (44), Expect = 2e-14 Identities = 59/64 (92%) Strand = Plus / Minus Query: 137 tctccggcgcggtgttcaacctgtccacgagcatcatcggcgccggcatcatgtcgatcc 196 |||||||||||||||||||||||||||| | |||||||||||| ||||||||| || ||| Sbjct: 1263 tctccggcgcggtgttcaacctgtccaccaccatcatcggcgcgggcatcatggcgctcc 1204 Query: 197 cggc 200 |||| Sbjct: 1203 cggc 1200
>dbj|AK069154.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006P21, full insert sequence Length = 1935 Score = 87.7 bits (44), Expect = 2e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 137 tctccggcgcggtgttcaacctgtccacgagcatcatcggcgccggcatcatgtcgatcc 196 |||||||||||||||||||||||||||| | |||| ||||||||||||||||| || ||| Sbjct: 318 tctccggcgcggtgttcaacctgtccaccaccatcgtcggcgccggcatcatggcgctcc 377 Query: 197 cggc 200 |||| Sbjct: 378 cggc 381
>ref|NM_190405.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1377 Score = 83.8 bits (42), Expect = 2e-13 Identities = 69/78 (88%) Strand = Plus / Plus Query: 141 cggcgcggtgttcaacctgtccacgagcatcatcggcgccggcatcatgtcgatcccggc 200 |||||||||||||||| |||| |||||| || | |||||||| ||||||||||||||||| Sbjct: 129 cggcgcggtgttcaacgtgtcgacgagcgtcgtgggcgccgggatcatgtcgatcccggc 188 Query: 201 ggcaatgcgcgtcctcgg 218 ||| ||||| || ||||| Sbjct: 189 ggccatgcgggtgctcgg 206
>ref|NM_185810.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1347 Score = 60.0 bits (30), Expect = 4e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 140 ccggcgcggtgttcaacctgtccacgagcatcatcggcgccggcatcatg 189 |||||||||||||||||||||| |||| |||| |||| ||||| |||||| Sbjct: 95 ccggcgcggtgttcaacctgtcgacgaccatcgtcggggccggaatcatg 144
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 60.0 bits (30), Expect = 4e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 140 ccggcgcggtgttcaacctgtccacgagcatcatcggcgccggcatcatg 189 |||||||||||||||||||||| |||| |||| |||| ||||| |||||| Sbjct: 9407376 ccggcgcggtgttcaacctgtcgacgaccatcgtcggggccggaatcatg 9407425 Score = 44.1 bits (22), Expect = 0.21 Identities = 37/42 (88%) Strand = Plus / Minus Query: 144 cgcggtgttcaacctgtccacgagcatcatcggcgccggcat 185 ||||||||||||||| |||| |||||||||||||||||| Sbjct: 25930660 cgcggtgttcaacctcgccacctccatcatcggcgccggcat 25930619
>dbj|AP003044.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0038C05 Length = 152941 Score = 60.0 bits (30), Expect = 4e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 140 ccggcgcggtgttcaacctgtccacgagcatcatcggcgccggcatcatg 189 |||||||||||||||||||||| |||| |||| |||| ||||| |||||| Sbjct: 135786 ccggcgcggtgttcaacctgtcgacgaccatcgtcggggccggaatcatg 135835
>dbj|AK120497.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121D24, full insert sequence Length = 1985 Score = 60.0 bits (30), Expect = 4e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 140 ccggcgcggtgttcaacctgtccacgagcatcatcggcgccggcatcatg 189 |||||||||||||||||||||| |||| |||| |||| ||||| |||||| Sbjct: 424 ccggcgcggtgttcaacctgtcgacgaccatcgtcggggccggaatcatg 473
>dbj|AK099920.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116L21, full insert sequence Length = 1869 Score = 60.0 bits (30), Expect = 4e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 140 ccggcgcggtgttcaacctgtccacgagcatcatcggcgccggcatcatg 189 |||||||||||||||||||||| |||| |||| |||| ||||| |||||| Sbjct: 356 ccggcgcggtgttcaacctgtcgacgaccatcgtcggggccggaatcatg 405
>dbj|AK066102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051P03, full insert sequence Length = 1778 Score = 60.0 bits (30), Expect = 4e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 140 ccggcgcggtgttcaacctgtccacgagcatcatcggcgccggcatcatg 189 |||||||||||||||||||||| |||| |||| |||| ||||| |||||| Sbjct: 292 ccggcgcggtgttcaacctgtcgacgaccatcgtcggggccggaatcatg 341
>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29 Length = 298450 Score = 52.0 bits (26), Expect = 9e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 210 cgtcctcggggtcgtccccgcgctcgtcct 239 |||||||||||||||||||||||| ||||| Sbjct: 96813 cgtcctcggggtcgtccccgcgctggtcct 96784
>gb|AC104705.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1008_D08, complete sequence Length = 94286 Score = 48.1 bits (24), Expect = 0.014 Identities = 24/24 (100%) Strand = Plus / Minus Query: 70 ggcgccgccggcgtcgacgagccg 93 |||||||||||||||||||||||| Sbjct: 52875 ggcgccgccggcgtcgacgagccg 52852
>gb|AC130599.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0016G07, complete sequence Length = 123167 Score = 48.1 bits (24), Expect = 0.014 Identities = 24/24 (100%) Strand = Plus / Minus Query: 70 ggcgccgccggcgtcgacgagccg 93 |||||||||||||||||||||||| Sbjct: 119776 ggcgccgccggcgtcgacgagccg 119753
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 48.1 bits (24), Expect = 0.014 Identities = 24/24 (100%) Strand = Plus / Minus Query: 72 cgccgccggcgtcgacgagccgct 95 |||||||||||||||||||||||| Sbjct: 581087 cgccgccggcgtcgacgagccgct 581064
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 48.1 bits (24), Expect = 0.014 Identities = 24/24 (100%) Strand = Plus / Minus Query: 70 ggcgccgccggcgtcgacgagccg 93 |||||||||||||||||||||||| Sbjct: 6748614 ggcgccgccggcgtcgacgagccg 6748591
>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16 Length = 347356 Score = 46.1 bits (23), Expect = 0.054 Identities = 26/27 (96%) Strand = Plus / Plus Query: 12 ccacacgccccagagcacgccgaacac 38 |||||||||||| |||||||||||||| Sbjct: 120308 ccacacgccccacagcacgccgaacac 120334
>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14 Length = 348251 Score = 46.1 bits (23), Expect = 0.054 Identities = 26/27 (96%) Strand = Plus / Plus Query: 12 ccacacgccccagagcacgccgaacac 38 |||||||||||| |||||||||||||| Sbjct: 124503 ccacacgccccacagcacgccgaacac 124529
>emb|BX640413.1| Bordetella pertussis strain Tohama I, complete genome; segment 3/12 Length = 349028 Score = 46.1 bits (23), Expect = 0.054 Identities = 26/27 (96%) Strand = Plus / Plus Query: 12 ccacacgccccagagcacgccgaacac 38 |||||||||||| |||||||||||||| Sbjct: 33066 ccacacgccccatagcacgccgaacac 33092
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 46.1 bits (23), Expect = 0.054 Identities = 26/27 (96%) Strand = Plus / Plus Query: 210 cgtcctcggggtcgtccccgcgctcgt 236 |||||||||||| |||||||||||||| Sbjct: 8672960 cgtcctcggggtggtccccgcgctcgt 8672986 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 gcatcatcggcgccggcatc 186 |||||||||||||||||||| Sbjct: 8699253 gcatcatcggcgccggcatc 8699234 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 224 tccccgcgctcgtcctcatcgcgg 247 ||||||||||||||||| |||||| Sbjct: 8662010 tccccgcgctcgtcctcttcgcgg 8662033 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 ccggcgcggtgttcaacctgtcca 163 |||||||||||| ||||||||||| Sbjct: 4187980 ccggcgcggtgtacaacctgtcca 4187957
>ref|XM_473856.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1992 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 78 cggcgtcgacgagccgctgctc 99 |||||||||||||||||||||| Sbjct: 375 cggcgtcgacgagccgctgctc 396
>ref|XM_848007.1| PREDICTED: Canis familiaris similar to Rho GTPase activating protein 15 (LOC490917), mRNA Length = 2272 Score = 44.1 bits (22), Expect = 0.21 Identities = 31/34 (91%) Strand = Plus / Minus Query: 207 gcgcgtcctcggggtcgtccccgcgctcgtcctc 240 ||||||||||||| |||||| || |||||||||| Sbjct: 506 gcgcgtcctcgggctcgtcctcgggctcgtcctc 473
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 44.1 bits (22), Expect = 0.21 Identities = 28/30 (93%) Strand = Plus / Plus Query: 225 ccccgcgctcgtcctcatcgcggccgccgc 254 ||||||||||||||||| |||||| ||||| Sbjct: 30471 ccccgcgctcgtcctcaccgcggcggccgc 30500
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17, complete sequence Length = 160484 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 78 cggcgtcgacgagccgctgctc 99 |||||||||||||||||||||| Sbjct: 20265 cggcgtcgacgagccgctgctc 20286
>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence Length = 150551 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 78 cggcgtcgacgagccgctgctc 99 |||||||||||||||||||||| Sbjct: 135558 cggcgtcgacgagccgctgctc 135579
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Minus Query: 63 gggagcaggcgccgccggcgtcgacg 88 ||||||||||||||||| |||||||| Sbjct: 2161222 gggagcaggcgccgccgccgtcgacg 2161197
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 78 cggcgtcgacgagccgctgctc 99 |||||||||||||||||||||| Sbjct: 31038185 cggcgtcgacgagccgctgctc 31038206
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 167 gcatcatcggcgccggcatcat 188 |||||||||||||||||||||| Sbjct: 8279508 gcatcatcggcgccggcatcat 8279487
>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0017B12 Length = 157424 Score = 44.1 bits (22), Expect = 0.21 Identities = 37/42 (88%) Strand = Plus / Minus Query: 144 cgcggtgttcaacctgtccacgagcatcatcggcgccggcat 185 ||||||||||||||| |||| |||||||||||||||||| Sbjct: 85758 cgcggtgttcaacctcgccacctccatcatcggcgccggcat 85717
>gb|AF104994.1|AF104994 Streptomyces coelicolor A3(2) periplasmic binding protein (atrA), permease (AtrB), ATP-binding protein (atrC), methyltransferase (metZ), signal peptidase, Ni-containing superoxide dismutase (sodN), puromycin N-acetyltransferase (pat), and geranyl transferase (gtr) genes, complete cds; and unknown genes Length = 8568 Score = 44.1 bits (22), Expect = 0.21 Identities = 28/30 (93%) Strand = Plus / Minus Query: 225 ccccgcgctcgtcctcatcgcggccgccgc 254 ||||||||||||||||| |||||| ||||| Sbjct: 8226 ccccgcgctcgtcctcaccgcggcggccgc 8197
>dbj|AK105614.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B09, full insert sequence Length = 2305 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 78 cggcgtcgacgagccgctgctc 99 |||||||||||||||||||||| Sbjct: 472 cggcgtcgacgagccgctgctc 493
>dbj|AK070101.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044I16, full insert sequence Length = 2261 Score = 44.1 bits (22), Expect = 0.21 Identities = 37/42 (88%) Strand = Plus / Plus Query: 144 cgcggtgttcaacctgtccacgagcatcatcggcgccggcat 185 ||||||||||||||| |||| |||||||||||||||||| Sbjct: 720 cgcggtgttcaacctcgccacctccatcatcggcgccggcat 761
>dbj|AK069344.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010O14, full insert sequence Length = 2254 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 78 cggcgtcgacgagccgctgctc 99 |||||||||||||||||||||| Sbjct: 421 cggcgtcgacgagccgctgctc 442
>dbj|AP006865.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT37H21, TM1032, complete sequence Length = 95067 Score = 44.1 bits (22), Expect = 0.21 Identities = 55/66 (83%) Strand = Plus / Minus Query: 136 gtctccggcgcggtgttcaacctgtccacgagcatcatcggcgccggcatcatgtcgatc 195 ||||||||||| |||||||| | || || ||||| || |||||||| |||||||| || Sbjct: 72363 gtctccggcgccgtgttcaatgtctctaccagcataattggcgccggaatcatgtctctc 72304 Query: 196 ccggcg 201 |||||| Sbjct: 72303 ccggcg 72298 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 tctccggcgcggtgttcaac 156 |||||||||||||||||||| Sbjct: 79986 tctccggcgcggtgttcaac 79967
>gb|AY234384.1|AY234384S1 Rubrivivax gelatinosus strain S1 5' region photosynthesis gene cluster, partial sequence Length = 24637 Score = 42.1 bits (21), Expect = 0.84 Identities = 24/25 (96%) Strand = Plus / Plus Query: 29 cgccgaacacgaggccgccggcgag 53 ||||||||||||||||| ||||||| Sbjct: 327 cgccgaacacgaggccggcggcgag 351
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 catcatcggcgccggcatcat 188 ||||||||||||||||||||| Sbjct: 5687583 catcatcggcgccggcatcat 5687603 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 ggcgccggcatcatgtcgat 194 |||||||||||||||||||| Sbjct: 2226270 ggcgccggcatcatgtcgat 2226251
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 cgggcgggcacggcggcgggg 130 ||||||||||||||||||||| Sbjct: 1105614 cgggcgggcacggcggcgggg 1105634 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 gcgccggcatcatgtcgatc 195 |||||||||||||||||||| Sbjct: 922137 gcgccggcatcatgtcgatc 922118
>emb|AJ628955.2| Streptomyces rimosus subsp. paromomycinus genomic region of the paromomycin biosynthesis gene cluster, strain NRRL 2455 Length = 48169 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 ggcacggcggcggggcgtcgg 136 ||||||||||||||||||||| Sbjct: 1244 ggcacggcggcggggcgtcgg 1264
>dbj|AB034704.1| Rubrivivax gelatinosus photosynthetic gene cluster, complete cds, stain:IL144 Length = 58996 Score = 42.1 bits (21), Expect = 0.84 Identities = 24/25 (96%) Strand = Plus / Plus Query: 29 cgccgaacacgaggccgccggcgag 53 ||||||||||||||||| ||||||| Sbjct: 9680 cgccgaacacgaggccggcggcgag 9704
>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete sequence Length = 141691 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 cgccggcgtcgacgagccgctgct 98 ||||||||||| |||||||||||| Sbjct: 89874 cgccggcgtcggcgagccgctgct 89851
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 228 cgcgctcgtcctcatcgcggccgccgcc 255 |||||||| |||| |||||||||||||| Sbjct: 2468184 cgcgctcgccctcttcgcggccgccgcc 2468157
>ref|XM_360200.1| Magnaporthe grisea 70-15 hypothetical protein (MG05574.4) partial mRNA Length = 1572 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 catcatcggcgccggcatca 187 |||||||||||||||||||| Sbjct: 162 catcatcggcgccggcatca 181
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 cgccgccggcgtcgacgagccgct 95 ||||||||||| |||||||||||| Sbjct: 1096941 cgccgccggcgacgacgagccgct 1096918
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 228 cgcgctcgtcctcatcgcggccgccgcc 255 |||||||| |||| |||||||||||||| Sbjct: 3717921 cgcgctcgccctcttcgcggccgccgcc 3717948 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 gcgccgccggcgtcgacgagccgc 94 |||||| ||||||||||||||||| Sbjct: 997020 gcgccgtcggcgtcgacgagccgc 997043
>gb|AE009035.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 61 of 256 of the complete sequence Length = 11766 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 atcatcggcgccggcatcat 188 |||||||||||||||||||| Sbjct: 1884 atcatcggcgccggcatcat 1903
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 cgccggcgtcgacgagccgctgct 98 ||||||||||| |||||||||||| Sbjct: 24714327 cgccggcgtcggcgagccgctgct 24714304
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 gcatcatcggcgccggcatc 186 |||||||||||||||||||| Sbjct: 2400890 gcatcatcggcgccggcatc 2400871
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 ccggcgtcgacgagccgctg 96 |||||||||||||||||||| Sbjct: 2929068 ccggcgtcgacgagccgctg 2929087
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 cgccgccggcgtcgacgagccgct 95 ||||||||||| |||||||||||| Sbjct: 2414431 cgccgccggcgacgacgagccgct 2414408
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 228 cgcgctcgtcctcatcgcggccgccgcc 255 |||||||| |||| |||||||||||||| Sbjct: 3458227 cgcgctcgccctcttcgcggccgccgcc 3458254 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 gcgccgccggcgtcgacgagccgc 94 |||||| ||||||||||||||||| Sbjct: 839553 gcgccgtcggcgtcgacgagccgc 839576
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 atcatcggcgccggcatcat 188 |||||||||||||||||||| Sbjct: 2535773 atcatcggcgccggcatcat 2535792
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 cggcatcatgtcgatcccgg 199 |||||||||||||||||||| Sbjct: 4664143 cggcatcatgtcgatcccgg 4664124
>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183327 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 cgccggcgtcgacgagccgctgct 98 ||||||||||| |||||||||||| Sbjct: 9846 cgccggcgtcggcgagccgctgct 9823
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 atcatcggcgccggcatcat 188 |||||||||||||||||||| Sbjct: 660762 atcatcggcgccggcatcat 660781
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 cgccgccggcgtcgacgagccgct 95 ||||||||||| |||||||||||| Sbjct: 321619 cgccgccggcgacgacgagccgct 321642
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 cgccggcgtcgacgagccgctgct 98 ||||||||||| |||||||||||| Sbjct: 24631157 cgccggcgtcggcgagccgctgct 24631134
>dbj|AK110550.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-C01, full insert sequence Length = 1202 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 cgccggcgtcgacgagccgctgct 98 ||||||||||| |||||||||||| Sbjct: 332 cgccggcgtcggcgagccgctgct 355
>gb|AC004081.1|AC004081 Homo sapiens PAC clone RP1-320J15 from Xq23, complete sequence Length = 149409 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 agcatgggcaagggagcagg 71 |||||||||||||||||||| Sbjct: 73421 agcatgggcaagggagcagg 73440
>gb|AC167667.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940123D9, complete sequence Length = 121336 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 ggcgccgccggcgtcgacga 89 |||||||||||||||||||| Sbjct: 22037 ggcgccgccggcgtcgacga 22018
>gb|M94727.1|MXACARC Myxococcus xanthus phytoene dehydrogenase (carC) gene, complete cds Length = 1955 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ggcgcggtgttcaacctgtc 161 |||||||||||||||||||| Sbjct: 1654 ggcgcggtgttcaacctgtc 1673 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,571,145 Number of Sequences: 3902068 Number of extensions: 1571145 Number of successful extensions: 42501 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39012 Number of HSP's gapped (non-prelim): 3489 length of query: 256 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 234 effective length of database: 17,147,199,772 effective search space: 4012444746648 effective search space used: 4012444746648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
