ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet98b02 |
|---|---|
| Clone Library Name | barley_pub |
>RLUD_ZYMMO (P50513) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 317 Score = 47.4 bits (111), Expect = 2e-05 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 11/86 (12%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGV--------YCEALLSAL--PCSTASSGDPS-SKPNLHLANRLD 375 +VFEDE L VV+KPAG+ Y L++AL C+ SG ++P + +R+D Sbjct: 84 IVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCAGKLSGIGGVARPGI--VHRID 141 Query: 376 RDTSGLMVITKWHXVAAKLVKAFTEH 453 +DTSGL+V+ K A L F +H Sbjct: 142 KDTSGLLVVAKTDPAHAGLAAQFADH 167
>RLUD_PSEAE (P33640) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 320 Score = 45.8 bits (107), Expect = 5e-05 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 8/77 (10%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCE--------ALLSALPCSTASSGDPSSKPNLHLANRLDRDT 384 +V+EDE + V+DKPAG+ LL+AL D ++ P + +RLD+DT Sbjct: 85 IVYEDEHILVIDKPAGLVVHPAAGHQDGTLLNALLYHVP---DIANVPRAGIVHRLDKDT 141 Query: 385 SGLMVITKWHXVAAKLV 435 +GLMV+ K KLV Sbjct: 142 TGLMVVAKTLEAHTKLV 158
>RLUC_PSEAE (Q9HZM9) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 318 Score = 42.4 bits (98), Expect = 6e-04 Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 2/73 (2%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 +V+ED+ L VV+KPAG V+ + +SA P +K ++ L +RLDRDTSGL++I Sbjct: 97 IVYEDKALIVVNKPAGIAVHGGSGVSAGVIEVFRQLRPDAK-DIELVHRLDRDTSGLLMI 155 Query: 403 TKWHXVAAKLVKA 441 K + L +A Sbjct: 156 AKKRSMLRHLHEA 168
>RLUD_NEIMB (Q9K0B0) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 374 Score = 42.0 bits (97), Expect = 7e-04 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 8/82 (9%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGV--------YCEALLSALPCSTASSGDPSSKPNLHLANRLDRDT 384 +V+ED+ + VV+KPAG+ + LL+ L A + S P + +RLD++T Sbjct: 107 IVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGL---LAHCPELSQVPRAGIVHRLDKET 163 Query: 385 SGLMVITKWHXVAAKLVKAFTE 450 SGLMV+ K LV+ E Sbjct: 164 SGLMVVAKTLPAQNSLVRQLQE 185
>Y370_MYCGE (P47610) Hypothetical RNA pseudouridine synthase MG370 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 323 Score = 41.6 bits (96), Expect = 0.001 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 10/82 (12%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEA--------LLSALPCSTASSGDPSSKPNLH--LANRLDR 378 ++FEDE + VVDKP G+ C+ L + L S+K N + A+R+DR Sbjct: 90 IIFEDENIIVVDKPTGIVCQPDKKHSIINLSNMLLKHCGYRQFDSNKLNFYPQFAHRIDR 149 Query: 379 DTSGLMVITKWHXVAAKLVKAF 444 +TSG+++ K + +L K F Sbjct: 150 NTSGIVIGAKTNKALKELNKVF 171
>RLUD_NITEU (Q82WZ5) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 344 Score = 41.2 bits (95), Expect = 0.001 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 8/68 (11%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCE--------ALLSALPCSTASSGDPSSKPNLHLANRLDRDT 384 ++FED+ L ++DKPAG+ LL+AL + S P + +RLD+DT Sbjct: 111 ILFEDDHLIIIDKPAGLVVHPGNGNWHGTLLNAL---LNHAPQLSQVPRAGIVHRLDKDT 167 Query: 385 SGLMVITK 408 +GL+V+ K Sbjct: 168 TGLLVVAK 175
>Y1758_AQUAE (O67638) Hypothetical RNA pseudouridine synthase aq_1758 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 316 Score = 40.8 bits (94), Expect = 0.002 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 8/82 (9%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCE--------ALLSALPCSTASSGDPSSKPNLHLANRLDRDT 384 +++EDE +AVV+KP G+ L++AL + +RLD++T Sbjct: 84 IIYEDEDIAVVEKPCGLVVHPSPGYTSGTLVNALLYHIKDLSSIGGVERPGIVHRLDKET 143 Query: 385 SGLMVITKWHXVAAKLVKAFTE 450 +G+MVI K + LV+ F E Sbjct: 144 AGVMVIAKNNTAHRNLVRQFQE 165
>RLUD_NEIMA (Q9JVB6) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 374 Score = 40.4 bits (93), Expect = 0.002 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 8/68 (11%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGV--------YCEALLSALPCSTASSGDPSSKPNLHLANRLDRDT 384 +V+ED+ + VV+KPAG+ + LL+ L A + S P + +RLD++T Sbjct: 107 IVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGL---LAHCPELSQIPRAGIVHRLDKET 163 Query: 385 SGLMVITK 408 SGLMV+ K Sbjct: 164 SGLMVVAK 171
>RLUD_BUCAI (P57481) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 312 Score = 40.4 bits (93), Expect = 0.002 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 8/68 (11%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCE--------ALLSALPCSTASSGDPSSKPNLHLANRLDRDT 384 +V+ED + +++KPAG+ +L+AL +S D P + +RLD+DT Sbjct: 86 IVYEDSDILIINKPAGLVVHPGSGNKSGTILNALLYHYKNSKD---LPRAGIVHRLDKDT 142 Query: 385 SGLMVITK 408 SGLMVI K Sbjct: 143 SGLMVIAK 150
>Y548_MYCPN (P75230) Hypothetical RNA pseudouridine synthase MG370 homolog (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) (G12_orf326) Length = 326 Score = 40.0 bits (92), Expect = 0.003 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 12/84 (14%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCE------------ALLSALPCSTASSGDPSSKPNLHLANRL 372 V+FEDE L VVDKPAGV C+ +LL + S P A+R+ Sbjct: 89 VIFEDEQLIVVDKPAGVVCQPDAKHELFNLANSLLKHCGYNQYFKNSLSFIP--RFAHRI 146 Query: 373 DRDTSGLMVITKWHXVAAKLVKAF 444 DR+T GL++ K + +L F Sbjct: 147 DRNTCGLVIGAKTNQALQELEAVF 170
>RLUD_XANAC (Q8PHN2) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 331 Score = 40.0 bits (92), Expect = 0.003 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 10/80 (12%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCE--------ALLSALPCSTASSGDPS--SKPNLHLANRLDR 378 V++EDE + V+DKPAG+ L++AL DP+ S P + +RLD+ Sbjct: 92 VLYEDEQVLVIDKPAGLVVHPGAGNPDRTLVNALLFR-----DPALASVPRAGVVHRLDK 146 Query: 379 DTSGLMVITKWHXVAAKLVK 438 DTSG+MV+ + LV+ Sbjct: 147 DTSGVMVVARTVQAQTALVE 166
>RLUA_VIBPA (Q87LD3) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 250 Score = 39.7 bits (91), Expect = 0.004 Identities = 24/72 (33%), Positives = 37/72 (51%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVITK 408 +VFED+ + V+KP+G+ A + S P++ + +RLD TSGLMV+ K Sbjct: 16 IVFEDDHILAVNKPSGLLSVPGRLAEHHDSMWSRLQEEYPDIQVVHRLDMSTSGLMVLAK 75 Query: 409 WHXVAAKLVKAF 444 + L K F Sbjct: 76 NKRAESALKKQF 87
>RLUD_VIBPA (Q87S65) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 39.3 bits (90), Expect = 0.005 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%) Frame = +1 Query: 229 VVFEDEWLAVVDKPA------------GVYCEALLSALPCSTASSGDPSSKPNLHLANRL 372 +V+ED+ + V++KP G ALL P D + P + +RL Sbjct: 86 IVYEDDDIIVINKPRDFVVHPGAGTPDGTVLNALLHHYP-------DIAEVPRAGIVHRL 138 Query: 373 DRDTSGLMVITKWHXVAAKLVKA 441 D+DT+GLMV+ K +LV+A Sbjct: 139 DKDTTGLMVVAKTVPAQTRLVRA 161
>RLUC_RICCN (Q92IS6) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 303 Score = 39.3 bits (90), Expect = 0.005 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 7/117 (5%) Frame = +1 Query: 121 EYPCPVSPPYPAVSKDVELRRAMTXXXXXXXXXXXXVVFEDEWLAVVDKPAGVYCE---- 288 ++ PV P V D E++ A +++ D+ L ++KPAG+ + Sbjct: 62 KFNLPVKQPEKLVFTDAEIKLAKKITTDY-------LIYADDNLIAINKPAGLATQGGTK 114 Query: 289 ---ALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVITKWHXVAAKLVKAFTE 450 ++ SAL D L +RLD+ TSGL++I K + + KL AF E Sbjct: 115 INLSIDSALKYLNYKGAD------FKLVHRLDKKTSGLLLIAKNYLSSVKLHNAFKE 165
>YBC5_CHLVI (O50310) Hypothetical RNA pseudouridine synthase in bchI 5'region| (EC 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 327 Score = 39.3 bits (90), Expect = 0.005 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 10/82 (12%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGV--------YCEALLSALPCSTASSGDPSSKPNLH--LANRLDR 378 +++ED+ L V+DK AG+ + L +A+ D K + + +RLD+ Sbjct: 79 ILYEDDDLMVIDKEAGMVVHPAFGNWTGTLANAILHHLGKDADELDKTEMRPGIVHRLDK 138 Query: 379 DTSGLMVITKWHXVAAKLVKAF 444 DTSGL++I K KL + F Sbjct: 139 DTSGLIIIAKNPTALHKLARQF 160
>TDRD6_MOUSE (P61407) Tudor domain-containing protein 6| Length = 2134 Score = 38.5 bits (88), Expect = 0.008 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLSALPCSTASSGDPSSKPN----LHLANRLDRDTSGLM 396 V F+ W ++ GV E ++S PC+ S +++ L +AN+ + DTS Sbjct: 1455 VKFQGTWEVILADEHGVIAEDMISRFPCNGNSQAGLTTQTMKGDCLKIANKPNTDTS--- 1511 Query: 397 VITKWHXVAAKLVKAF 444 V+ W+ AKL+KA+ Sbjct: 1512 VLLNWYNPKAKLIKAY 1527
>RLUA_VIBVU (Q8DCG0) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 250 Score = 38.1 bits (87), Expect = 0.010 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLSALPCSTAS--SGDPSSKPNLHLANRLDRDTSGLMVI 402 ++FED+ + V+KP+G+ ++ LP S S P + + +RLD TSGLMV Sbjct: 16 IIFEDDHILAVNKPSGLL--SVPGRLPEHHDSMWSRLQEQYPEIQVVHRLDMSTSGLMVF 73 Query: 403 TKWHXVAAKLVKAF 444 K A L K F Sbjct: 74 AKNKRAEAALKKQF 87
>RLUC_PASMU (Q9CM51) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 326 Score = 38.1 bits (87), Expect = 0.010 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 2/62 (3%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 ++FEDE L V++KP+G V+ + LS + P ++ L L +RLDRDTSG++++ Sbjct: 101 ILFEDECLLVLNKPSGIAVHGGSGLSFGVIEALRTLRPDAR-FLELVHRLDRDTSGILLV 159 Query: 403 TK 408 K Sbjct: 160 AK 161
>YMDA_CHLAU (Q45826) Hypothetical RNA pseudouridine synthase in mdh 5'region| (EC 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) (ORFA) (Fragment) Length = 253 Score = 38.1 bits (87), Expect = 0.010 Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 12/81 (14%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCE------------ALLSALPCSTASSGDPSSKPNLHLANRL 372 VV+ED +AV++KPAG+ ALL+ P A G+ +P + +RL Sbjct: 30 VVYEDADIAVINKPAGMVVHPAPGHPRGTLVNALLARYP-DLAIGGE--LRPGI--VHRL 84 Query: 373 DRDTSGLMVITKWHXVAAKLV 435 DRDTSGL+VI + LV Sbjct: 85 DRDTSGLLVIARHDQAMRSLV 105
>RLUC_RICPR (Q9ZDR7) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 303 Score = 37.7 bits (86), Expect = 0.014 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 7/81 (8%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCE-------ALLSALPCSTASSGDPSSKPNLHLANRLDRDTS 387 +++ED+ L ++KPA + + ++ SAL D L +RLD++TS Sbjct: 91 LIYEDDHLIAINKPASLATQGGSKINLSIDSALKYLNYQGAD------FKLVHRLDKETS 144 Query: 388 GLMVITKWHXVAAKLVKAFTE 450 GL++I K + + KL AF E Sbjct: 145 GLLLIAKNYLSSVKLHNAFKE 165
>RLUD_VIBCH (Q9KU20) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 324 Score = 37.7 bits (86), Expect = 0.014 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 8/79 (10%) Frame = +1 Query: 229 VVFEDEWLAVVDKP--------AGVYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDT 384 +V+ED+ + V++KP AG + +L+AL + + P + +RLD+DT Sbjct: 86 IVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEV---PRAGIVHRLDKDT 142 Query: 385 SGLMVITKWHXVAAKLVKA 441 +GLMV+ K +LV+A Sbjct: 143 TGLMVVAKTVPAQTRLVRA 161
>RLUD_PASMU (Q9CKA6) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 324 Score = 37.7 bits (86), Expect = 0.014 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 12/82 (14%) Frame = +1 Query: 229 VVFEDEWLAVVDKP------------AGVYCEALLSALPCSTASSGDPSSKPNLHLANRL 372 +V+ED+ + V++KP +G ALL P + P + +RL Sbjct: 85 IVYEDDDILVINKPKDFVVHPGAGNASGTVLNALLYHYPAI-------AEVPRAGIVHRL 137 Query: 373 DRDTSGLMVITKWHXVAAKLVK 438 D+DT+GLMVI K KLV+ Sbjct: 138 DKDTTGLMVIAKTIPAQTKLVR 159
>RLUD_XANCP (Q8P682) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 331 Score = 37.7 bits (86), Expect = 0.014 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 6/76 (7%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLSALPCSTASSG----DPS--SKPNLHLANRLDRDTSG 390 V++ED+ + V+DKPAG+ + P T + DP+ + P + +RLD+DTSG Sbjct: 92 VLYEDDHVLVIDKPAGLVVHPG-AGNPDGTLVNALLFRDPNLAAVPRAGVVHRLDKDTSG 150 Query: 391 LMVITKWHXVAAKLVK 438 +MV+ + LV+ Sbjct: 151 VMVVARTLQAQTALVE 166
>RLUD_VIBVU (Q8DEV0) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 37.7 bits (86), Expect = 0.014 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 12/83 (14%) Frame = +1 Query: 229 VVFEDEWLAVVDKPA------------GVYCEALLSALPCSTASSGDPSSKPNLHLANRL 372 +V+ED+ + V++KP G ALL P + + P + +RL Sbjct: 86 IVYEDDDILVINKPRDFVVHPGAGTPDGTVLNALLFHCP-------EVAEVPRAGIVHRL 138 Query: 373 DRDTSGLMVITKWHXVAAKLVKA 441 D+DT+GLMV+ K +LV+A Sbjct: 139 DKDTTGLMVVAKTVPAQTRLVRA 161
>Y209_MYCGE (P47451) Hypothetical RNA pseudouridine synthase MG209 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 308 Score = 37.7 bits (86), Expect = 0.014 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLSALPCST-ASSGDPSSKPNLHLANRLDRDTSGLMVIT 405 V+FED+ L V++KP+G+ S A+ ++K ++L +RLDRDTSG +V+ Sbjct: 82 VLFEDKDLMVINKPSGLLTHPTTFNEKASLLAACIFHNNKNPVYLVHRLDRDTSGAIVVC 141 Query: 406 K 408 K Sbjct: 142 K 142
>RLUC_YERPE (Q8ZFU1) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 320 Score = 37.4 bits (85), Expect = 0.018 Identities = 23/62 (37%), Positives = 40/62 (64%), Gaps = 2/62 (3%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 ++FED++L V++KP+G V+ + LS + P ++ L L +RLDRDTSG++++ Sbjct: 95 ILFEDDYLLVLNKPSGTAVHGGSGLSFGVIEGLRALRPEAR-FLELVHRLDRDTSGVLLV 153 Query: 403 TK 408 K Sbjct: 154 AK 155
>RLUD_RALSO (Q8XYX8) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 358 Score = 37.4 bits (85), Expect = 0.018 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 6/76 (7%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLSALPCSTASSG------DPSSKPNLHLANRLDRDTSG 390 VV+ED+ L V++KPAG+ T +G + P + +RLD++TSG Sbjct: 118 VVYEDDTLLVINKPAGLVVHPAAGNWS-GTVLNGLLHRYPQAAGLPRAGIVHRLDKETSG 176 Query: 391 LMVITKWHXVAAKLVK 438 LMV+ + LV+ Sbjct: 177 LMVVARTLPAQTDLVR 192
>YJBO_BACSU (O31613) Hypothetical RNA pseudouridine synthase yjbO (EC 5.4.99.-)| (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 283 Score = 37.0 bits (84), Expect = 0.023 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 11/71 (15%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLSALPCSTASSGDPSS-----------KPNLHLANRLD 375 +++EDE + V++K + +S++P SG ++ + +HL RLD Sbjct: 68 ILYEDEHVLVINK------QPYVSSIPSREHPSGSIANGIIDHYQTTGVRATVHLVTRLD 121 Query: 376 RDTSGLMVITK 408 RDTSG+M++ K Sbjct: 122 RDTSGIMLVAK 132
>RLUC_VIBVU (Q8D8G1) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 315 Score = 37.0 bits (84), Expect = 0.023 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 2/105 (1%) Frame = +1 Query: 142 PPYPAVSKDVELRRAMTXXXXXXXXXXXXVVFEDEWLAVVDKPAG--VYCEALLSALPCS 315 PP KD E A + +++ED+ L V++KP+G V+ + L Sbjct: 69 PPVTLEKKDPET--APSTKLNKVAELQDLIIYEDDHLLVLNKPSGTAVHGGSGLKFGAIE 126 Query: 316 TASSGDPSSKPNLHLANRLDRDTSGLMVITKWHXVAAKLVKAFTE 450 + P ++ L L +R+DRDTSG++++ K L F E Sbjct: 127 ALRALRPEAR-FLELVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
>RLUC_VIBCH (Q9KQH0) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 315 Score = 36.6 bits (83), Expect = 0.030 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 2/106 (1%) Frame = +1 Query: 139 SPPYPAVSKDVELRRAMTXXXXXXXXXXXXVVFEDEWLAVVDKPAG--VYCEALLSALPC 312 +PP +SK EL +V+ED+ L +++KP+G V+ + L Sbjct: 81 APPSTKLSKVAELEHC--------------IVYEDDHLLILNKPSGTAVHGGSGLHFGAI 126 Query: 313 STASSGDPSSKPNLHLANRLDRDTSGLMVITKWHXVAAKLVKAFTE 450 + P ++ L L +R+DRDTSG++++ K L F E Sbjct: 127 EALRALRPQAR-FLELVHRIDRDTSGILLVAKKRSALRHLQAQFRE 171
>RLUD_XYLFT (Q87AR7) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 331 Score = 36.6 bits (83), Expect = 0.030 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 10/80 (12%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCE--------ALLSALPCSTASSGDPS--SKPNLHLANRLDR 378 +++EDE + V++KPAG+ L++AL DP+ + P + +RLD+ Sbjct: 92 ILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNAL-----LHRDPALAAVPRAGVVHRLDK 146 Query: 379 DTSGLMVITKWHXVAAKLVK 438 DTSG+MV+ + LV+ Sbjct: 147 DTSGVMVVARTLQAQTALVE 166
>RLUD_YERPE (Q8ZBV7) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 36.2 bits (82), Expect = 0.039 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 12/83 (14%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCE------------ALLSALPCSTASSGDPSSKPNLHLANRL 372 +V+ED + V++KP G+ ALL P + P + +RL Sbjct: 86 IVYEDNDILVINKPRGLVVHPGAGNPDGTVLNALLHYYP-------EIMDVPRAGIVHRL 138 Query: 373 DRDTSGLMVITKWHXVAAKLVKA 441 D+DT+GLMV+ K +LV+A Sbjct: 139 DKDTTGLMVVAKTVPAQTRLVEA 161
>RLUD_SHIFL (P65835) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 36.2 bits (82), Expect = 0.039 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 12/83 (14%) Frame = +1 Query: 229 VVFEDEWLAVVDKPA------------GVYCEALLSALPCSTASSGDPSSKPNLHLANRL 372 +V+EDE + V++KP G ALL P + P + +RL Sbjct: 85 IVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYP-------PIADVPRAGIVHRL 137 Query: 373 DRDTSGLMVITKWHXVAAKLVKA 441 D+DT+GLMV+ K +LV++ Sbjct: 138 DKDTTGLMVVAKTVPAQTRLVES 160
>RLUD_ECOL6 (P65834) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 36.2 bits (82), Expect = 0.039 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 12/83 (14%) Frame = +1 Query: 229 VVFEDEWLAVVDKPA------------GVYCEALLSALPCSTASSGDPSSKPNLHLANRL 372 +V+EDE + V++KP G ALL P + P + +RL Sbjct: 85 IVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYP-------PIADVPRAGIVHRL 137 Query: 373 DRDTSGLMVITKWHXVAAKLVKA 441 D+DT+GLMV+ K +LV++ Sbjct: 138 DKDTTGLMVVAKTVPAQTRLVES 160
>RLUD_ECO57 (Q8X9F0) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 36.2 bits (82), Expect = 0.039 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 12/83 (14%) Frame = +1 Query: 229 VVFEDEWLAVVDKPA------------GVYCEALLSALPCSTASSGDPSSKPNLHLANRL 372 +V+EDE + V++KP G ALL P + P + +RL Sbjct: 85 IVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYP-------PIADVPRAGIVHRL 137 Query: 373 DRDTSGLMVITKWHXVAAKLVKA 441 D+DT+GLMV+ K +LV++ Sbjct: 138 DKDTTGLMVVAKTVPAQTRLVES 160
>RLUD_BUCAP (Q8K9E9) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 315 Score = 36.2 bits (82), Expect = 0.039 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 8/76 (10%) Frame = +1 Query: 232 VFEDEWLAVVDKPAGVYCE--------ALLSALPCSTASSGDPSSKPNLHLANRLDRDTS 387 ++ED + +++KP G+ +L+AL + SS P + +RLD+DTS Sbjct: 87 IYEDSNILIINKPPGLVVHPGAGNQDGTILNALLYRYTNI---SSIPRCGIIHRLDKDTS 143 Query: 388 GLMVITKWHXVAAKLV 435 GLMVI K KLV Sbjct: 144 GLMVIAKTIFSYNKLV 159
>RLUD_XYLFA (Q9PET9) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 331 Score = 35.8 bits (81), Expect = 0.052 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 10/80 (12%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCE--------ALLSALPCSTASSGDPS--SKPNLHLANRLDR 378 +++EDE + V++KPAG+ L++AL DP+ + P + +RLD+ Sbjct: 92 ILYEDEHVFVLNKPAGLVVHPGAGNPDGTLVNAL-----LHRDPALAAVPRAGVVHRLDK 146 Query: 379 DTSGLMVITKWHXVAAKLVK 438 DTSG+MV+ + LV+ Sbjct: 147 DTSGVMVVARTLQAQTALVE 166
>RLUC_HAEIN (P44433) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 322 Score = 35.8 bits (81), Expect = 0.052 Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 2/62 (3%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 ++FED+ L +++KP+G V+ + L+ + P ++ L L +RLDRDTSG+++I Sbjct: 100 ILFEDDCLIILNKPSGIAVHGGSGLNFGVIEALRALRPEAR-FLELVHRLDRDTSGILLI 158 Query: 403 TK 408 K Sbjct: 159 AK 160
>RLUD_ECOLI (P33643) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 35.8 bits (81), Expect = 0.052 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 12/83 (14%) Frame = +1 Query: 229 VVFEDEWLAVVDKPA------------GVYCEALLSALPCSTASSGDPSSKPNLHLANRL 372 +V+EDE + +++KP G ALL P + P + +RL Sbjct: 85 IVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP-------PIADVPRAGIVHRL 137 Query: 373 DRDTSGLMVITKWHXVAAKLVKA 441 D+DT+GLMV+ K +LV++ Sbjct: 138 DKDTTGLMVVAKTVPAQTRLVES 160
>RIB2_YEAST (Q12362) DRAP deaminase| Length = 591 Score = 35.4 bits (80), Expect = 0.067 Identities = 20/60 (33%), Positives = 31/60 (51%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVITK 408 +VFEDE + V+DKP+ + + + ++H NRLD+ TSGLM + K Sbjct: 163 IVFEDEDILVIDKPSSIPVHPTGRYRFNTITKMLERQLGYSVHPCNRLDKPTSGLMFLAK 222
>Y1629_SYNY3 (P74346) Hypothetical RNA pseudouridine synthase slr1629 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 327 Score = 35.4 bits (80), Expect = 0.067 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 12/72 (16%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCE------------ALLSALPCSTASSGDPSSKPNLHLANRL 372 +++EDE L +++KPAG+ ALL+ P G +P + +RL Sbjct: 100 ILYEDEQLIIINKPAGLVVHPGPGHPDGTVVNALLAHCPDLAGIGG--VQRPGI--VHRL 155 Query: 373 DRDTSGLMVITK 408 D+DT+G MV+ K Sbjct: 156 DKDTTGAMVVAK 167
>RLUD_SALTY (P65836) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 35.0 bits (79), Expect = 0.088 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 12/83 (14%) Frame = +1 Query: 229 VVFEDEWLAVVDKPA------------GVYCEALLSALPCSTASSGDPSSKPNLHLANRL 372 +V+ED+ + V++KP G ALL P + P + +RL Sbjct: 85 IVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYP-------PIADVPRAGIVHRL 137 Query: 373 DRDTSGLMVITKWHXVAAKLVKA 441 D+DT+GLMV+ K +LV++ Sbjct: 138 DKDTTGLMVVAKTVPAQTRLVES 160
>RLUD_SALTI (P65837) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 35.0 bits (79), Expect = 0.088 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 12/83 (14%) Frame = +1 Query: 229 VVFEDEWLAVVDKPA------------GVYCEALLSALPCSTASSGDPSSKPNLHLANRL 372 +V+ED+ + V++KP G ALL P + P + +RL Sbjct: 85 IVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYP-------PIADVPRAGIVHRL 137 Query: 373 DRDTSGLMVITKWHXVAAKLVKA 441 D+DT+GLMV+ K +LV++ Sbjct: 138 DKDTTGLMVVAKTVPAQTRLVES 160
>RLUC_VIBPA (Q87N15) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 315 Score = 35.0 bits (79), Expect = 0.088 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 +++ED+ + +++KP+G V+ + L + P ++ L L +R+DRDTSG++++ Sbjct: 96 IIYEDDHMLILNKPSGTAVHGGSGLKFGAIEALRALRPQAR-FLELVHRIDRDTSGILLV 154 Query: 403 TKWHXVAAKLVKAFTE 450 K L F E Sbjct: 155 AKKRSALRHLQAQFRE 170
>RLUD_HAEIN (P44445) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 324 Score = 35.0 bits (79), Expect = 0.088 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 12/82 (14%) Frame = +1 Query: 229 VVFEDEWLAVVDKPA------------GVYCEALLSALPCSTASSGDPSSKPNLHLANRL 372 +V+ED+ + V++KP G ALL P P + +RL Sbjct: 85 IVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYPPIV-------EVPRAGIVHRL 137 Query: 373 DRDTSGLMVITKWHXVAAKLVK 438 D+DT+GLMV+ K KLV+ Sbjct: 138 DKDTTGLMVVAKTIPAQTKLVR 159
>TRUC_VIBPA (Q87MD4) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 246 Score = 34.7 bits (78), Expect = 0.11 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 5/80 (6%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGV-----YCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGL 393 +V++DE+ V+KPAG+ + + + T LH RLDR TSG+ Sbjct: 8 IVYQDEYFVAVNKPAGMLVHRSWLDKHETQFVMQTLRDQIGQHVFPLH---RLDRPTSGV 64 Query: 394 MVITKWHXVAAKLVKAFTEH 453 +V VA++++ F EH Sbjct: 65 LVFALSSEVASQVMPMFAEH 84
>TRUC_SALTY (Q8ZMD5) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 260 Score = 34.3 bits (77), Expect = 0.15 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 ++++D WL V+KPAG V+ L + ++ A+RLDR TSG++++ Sbjct: 4 ILYQDPWLVAVNKPAGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 Query: 403 TKWHXVAAKLVKAFTEH 453 +L + F +H Sbjct: 64 GLSSEAGRRLAQQFEQH 80
>TRUC_SALTI (Q8Z439) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 260 Score = 34.3 bits (77), Expect = 0.15 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 ++++D WL V+KPAG V+ L + ++ A+RLDR TSG++++ Sbjct: 4 ILYQDPWLVAVNKPAGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 Query: 403 TKWHXVAAKLVKAFTEH 453 +L + F +H Sbjct: 64 GLSSEAGRRLAQQFEQH 80
>TRUC_VIBCH (Q9KTL4) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 244 Score = 34.3 bits (77), Expect = 0.15 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 10/85 (11%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYC----------EALLSALPCSTASSGDPSSKPNLHLANRLDR 378 +V++DE+L V+KPAG+ E ++ L P LH RLDR Sbjct: 4 IVYQDEYLVAVNKPAGMLVHRSWLDKHETEFVMQTLRDQIGQHVFP-----LH---RLDR 55 Query: 379 DTSGLMVITKWHXVAAKLVKAFTEH 453 TSG++V +A++++ F H Sbjct: 56 PTSGVLVFALSSQIASEVMPMFANH 80
>YA32_SCHPO (Q09709) Hypothetical protein C18B11.02c in chromosome I| Length = 394 Score = 33.9 bits (76), Expect = 0.20 Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 12/72 (16%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGV------------YCEALLSALPCSTASSGDPSSKPNLHLANRL 372 +V EDE V+DKPAGV L+ CS L+ NRL Sbjct: 107 IVHEDESYVVIDKPAGVPVHPTGRYNHNTVLHILMKENKCSL-----------LYPCNRL 155 Query: 373 DRDTSGLMVITK 408 DR TSGLM +K Sbjct: 156 DRLTSGLMFFSK 167
>RLUC_HAEDU (P59835) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 320 Score = 33.9 bits (76), Expect = 0.20 Identities = 20/62 (32%), Positives = 39/62 (62%), Gaps = 2/62 (3%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 +++ED+ + V++KP+G V+ + LS + P ++ L L +R+DRDTSG++++ Sbjct: 98 ILYEDDVMLVLNKPSGIGVHGGSGLSFGVIEALRALRPQAR-FLELVHRIDRDTSGILLV 156 Query: 403 TK 408 K Sbjct: 157 AK 158
>Y745_HELPY (O25441) Hypothetical RNA pseudouridine synthase HP0745 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 327 Score = 33.9 bits (76), Expect = 0.20 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 8/68 (11%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLSA--------LPCSTASSGDPSSKPNLHLANRLDRDT 384 V+FEDE L V++KP + LS L + K + +RLD+DT Sbjct: 80 VIFEDEDLLVLNKPPNLVVHKALSVKEPTLVDWLEFKNYELSNLGLKERYGIVHRLDKDT 139 Query: 385 SGLMVITK 408 SG +VI K Sbjct: 140 SGGIVIAK 147
>TRUC_SHIFL (P0AA42) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 260 Score = 33.9 bits (76), Expect = 0.20 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 ++++DEWL V+KP+G V+ L + ++ A+RLDR TSG++++ Sbjct: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 Query: 403 TKWHXVAAKLVKAFTEH 453 L + F +H Sbjct: 64 GLSSEAGRLLAQQFEQH 80
>TRUC_ECOLI (P0AA41) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 260 Score = 33.9 bits (76), Expect = 0.20 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 ++++DEWL V+KP+G V+ L + ++ A+RLDR TSG++++ Sbjct: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 Query: 403 TKWHXVAAKLVKAFTEH 453 L + F +H Sbjct: 64 GLSSEAGRLLAQQFEQH 80
>TRUC_ECOL6 (Q8FEF9) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 260 Score = 33.9 bits (76), Expect = 0.20 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 ++++DEWL V+KP+G V+ L + ++ A+RLDR TSG++++ Sbjct: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 Query: 403 TKWHXVAAKLVKAFTEH 453 L + F +H Sbjct: 64 GLSSEAGRLLAQQFEQH 80
>TRUC_ECO57 (Q8X6T6) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 260 Score = 33.9 bits (76), Expect = 0.20 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 ++++DEWL V+KP+G V+ L + ++ A+RLDR TSG++++ Sbjct: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 Query: 403 TKWHXVAAKLVKAFTEH 453 L + F +H Sbjct: 64 GLSSEAGRLLAQQFEQH 80
>RLUC_SHIFL (P0AA40) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 319 Score = 33.9 bits (76), Expect = 0.20 Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 2/62 (3%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 +++ED+ + V++KP+G V+ + LS + P ++ L L +RLDRDTSG++++ Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEAR-FLELVHRLDRDTSGVLLV 153 Query: 403 TK 408 K Sbjct: 154 AK 155
>RLUC_SALTY (Q8ZQ16) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 319 Score = 33.9 bits (76), Expect = 0.20 Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 2/62 (3%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 +++ED+ + V++KP+G V+ + LS + P ++ L L +RLDRDTSG++++ Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEAR-FLELVHRLDRDTSGVLLV 153 Query: 403 TK 408 K Sbjct: 154 AK 155
>RLUC_SALTI (Q8Z7J7) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 319 Score = 33.9 bits (76), Expect = 0.20 Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 2/62 (3%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 +++ED+ + V++KP+G V+ + LS + P ++ L L +RLDRDTSG++++ Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEAR-FLELVHRLDRDTSGVLLV 153 Query: 403 TK 408 K Sbjct: 154 AK 155
>RLUC_ECOLI (P0AA39) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 319 Score = 33.9 bits (76), Expect = 0.20 Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 2/62 (3%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 +++ED+ + V++KP+G V+ + LS + P ++ L L +RLDRDTSG++++ Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEAR-FLELVHRLDRDTSGVLLV 153 Query: 403 TK 408 K Sbjct: 154 AK 155
>RLUC_ECOL6 (Q8FIP7) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 319 Score = 33.9 bits (76), Expect = 0.20 Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 2/62 (3%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 +++ED+ + V++KP+G V+ + LS + P ++ L L +RLDRDTSG++++ Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEAR-FLELVHRLDRDTSGVLLV 153 Query: 403 TK 408 K Sbjct: 154 AK 155
>RLUC_ECO57 (Q8X8J3) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 319 Score = 33.9 bits (76), Expect = 0.20 Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 2/62 (3%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 +++ED+ + V++KP+G V+ + LS + P ++ L L +RLDRDTSG++++ Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEAR-FLELVHRLDRDTSGVLLV 153 Query: 403 TK 408 K Sbjct: 154 AK 155
>Y505_ZYMMO (O66114) Hypothetical RNA pseudouridine synthase ZMO0505 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 219 Score = 33.5 bits (75), Expect = 0.26 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 11/85 (12%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLSALPCSTASSGDPSSKPNL-----------HLANRLD 375 V+F D ++DKPAG LP ++ G S + L + +RLD Sbjct: 8 VLFIDAEAMIIDKPAG---------LPVTSVRDGSLSLENYLASLCFGFKRWPSIVHRLD 58 Query: 376 RDTSGLMVITKWHXVAAKLVKAFTE 450 RDTSG +++ + + +L +AF++ Sbjct: 59 RDTSGCLLLARNPKMHRRLSEAFSQ 83
>RLUC_BUCBP (Q89AH2) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 315 Score = 33.5 bits (75), Expect = 0.26 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 +++ED + +++KP+G V+ + ++ P ++ L L +RLDRDTSG+++I Sbjct: 95 ILYEDNYFLILNKPSGMSVHSGSGINYGMIENLRILRPYNR-YLDLVHRLDRDTSGVLII 153 Query: 403 TKWHXVAAKLVKAFTE 450 K + L + E Sbjct: 154 AKKRSILRNLHEQLRE 169
>PUS6_YEAST (P53294) Pseudouridylate synthase 6 (EC 5.4.99.-) (Pseudouridine| synthase 6) (tRNA pseudouridine 31 synthase) (PSI31 synthase) (Uracil hydrolyase) Length = 404 Score = 33.5 bits (75), Expect = 0.26 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLSALPCSTASSGDPSSKPNLHLAN-----RLDRDTSGL 393 +VFEDE + V+DKP+G+ P + LH + RLD+ TSGL Sbjct: 121 IVFEDESILVIDKPSGI------PVHPTGQFYQNTITELLKLHGVDALPCYRLDKITSGL 174 Query: 394 MVITKWHXVAAKLVKA 441 +++ K A ++ K+ Sbjct: 175 LILAKNSQSAGEIQKS 190
>Y292_MYCPN (P75485) Hypothetical RNA pseudouridine synthase MG209 homolog (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) (H10_orf309) Length = 309 Score = 33.1 bits (74), Expect = 0.33 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 7/67 (10%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLSALPCSTASSGDPSSKPNLH-------LANRLDRDTS 387 +++EDE + VV+KP G L + P S S H L +RLDRDTS Sbjct: 82 ILYEDEQIMVVNKPNG------LISHPTSFNESESLLGAALFHCNHQPVFLVHRLDRDTS 135 Query: 388 GLMVITK 408 G++++ K Sbjct: 136 GVIMLAK 142
>TRUC_PECCC (Q47417) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 376 Score = 32.7 bits (73), Expect = 0.44 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 ++++DE L V+KP+G V+ L + +++ +RLDR TSG++++ Sbjct: 118 IIYQDEHLVAVNKPSGWLVHRSWLDRKEKVVVMQTVRDQIGQHVYTVHRLDRPTSGVLLL 177 Query: 403 TKWHXVAAKLVKAFTEH 453 VA L + F H Sbjct: 178 ALSSEVARALSQQFESH 194
>Y347_HELPJ (Q9ZMA1) Hypothetical RNA pseudouridine synthase jhp_0321 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 293 Score = 32.7 bits (73), Expect = 0.44 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 5/65 (7%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEAL-----LSALPCSTASSGDPSSKPNLHLANRLDRDTSGL 393 +VFE + V DKPA +Y S L C + G N H A+RLD +TSGL Sbjct: 71 LVFEAKDFGVFDKPAQIYTHPKGYFYHESLLDCIQSHFGK-----NAHPAHRLDYETSGL 125 Query: 394 MVITK 408 ++ K Sbjct: 126 VLAGK 130
>RLUC_BUCAP (Q8K9J8) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 314 Score = 32.7 bits (73), Expect = 0.44 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 +++ED +L +++KP+G V+ + ++ P K L L +R+DRDTSG++++ Sbjct: 94 ILYEDNYLLIINKPSGIAVHGGSGINLGVIEYFRKIRPLEK-FLELVHRIDRDTSGVLML 152 Query: 403 TKWHXVAAKLVKAFTE 450 K L K E Sbjct: 153 AKKRRSLLSLHKQIRE 168
>Y745_HELPJ (Q9ZL98) Hypothetical RNA pseudouridine synthase jhp_0682 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 327 Score = 32.7 bits (73), Expect = 0.44 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 8/68 (11%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCE--------ALLSALPCSTASSGDPSSKPNLHLANRLDRDT 384 V+FEDE L V++KP + L+ L + K + +RLD+DT Sbjct: 80 VIFEDEDLLVLNKPPNLVVHKAPSVKEPTLVDWLKSQNYELSNLGLKERYGIVHRLDKDT 139 Query: 385 SGLMVITK 408 SG +VI K Sbjct: 140 SGGIVIAK 147
>RLUC_BUCAI (P57430) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 314 Score = 32.3 bits (72), Expect = 0.57 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 2/62 (3%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 +++ED L +++KP+G V+ + L+ P +K L L +R+DRDTSG++++ Sbjct: 94 ILYEDSHLLIINKPSGIAVHGGSGLNFGVIEYFRKLRPLNK-FLELVHRIDRDTSGVLIL 152 Query: 403 TK 408 K Sbjct: 153 AK 154
>RSUA_VIBPA (Q87QD4) Ribosomal small subunit pseudouridine synthase A (EC| 5.4.99.-) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 233 Score = 32.0 bits (71), Expect = 0.74 Identities = 19/47 (40%), Positives = 25/47 (53%) Frame = +1 Query: 265 KPAGVYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVIT 405 KPA C P + +P + NLH A RLD DT+GL++IT Sbjct: 66 KPADFVCSHEDGYNPTAFVLLDEPKVE-NLHFAGRLDVDTTGLVLIT 111
>RLUA_VIBCH (Q9KP71) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 245 Score = 32.0 bits (71), Expect = 0.74 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLSALPCSTASSGDPSSK------PNLHLANRLDRDTSG 390 V++EDE + +KP+G L ++P D P++ + +RLD TSG Sbjct: 16 VIYEDEHIIAANKPSG------LLSVPGRPVEHYDSMWARLVDYCPDVKVVHRLDMSTSG 69 Query: 391 LMVITKWHXVAAKLVKAF 444 L++ K + + L K F Sbjct: 70 LILFAKGKHMESALKKQF 87
>PUS5_CANAL (Q5A0Y2) Pseudouridylate synthase PUS5 (EC 5.4.99.-) (Pseudouridine| synthase 5) (Uracil hydrolyase PUS5) Length = 247 Score = 32.0 bits (71), Expect = 0.74 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%) Frame = +1 Query: 253 AVVDKPAGVYCEA-----LLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVITKWHX 417 AVV+KP+G+ C+A +++AL + L RLDR +G +V+ + Sbjct: 13 AVVNKPSGMVCDASHTNNIITALTNEFTKILPSVNSSQFRLVQRLDRFVTGGLVVARNKK 72 Query: 418 VAAKLVKAF 444 A K+ K+F Sbjct: 73 WADKVRKSF 81
>TRUC_YERPE (Q8ZH72) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 257 Score = 32.0 bits (71), Expect = 0.74 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAG--VYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 ++++DE + V+KPAG V+ L + +++ +RLDR TSG++++ Sbjct: 4 IIYQDEHIVAVNKPAGWLVHRSWLDRNETVFVMQTVRDQIGQHVYTVHRLDRPTSGVLLM 63 Query: 403 TKWHXVAAKLVKAFTEH 453 VA L F +H Sbjct: 64 ALSSDVARMLSLQFEQH 80
>YHCT_BACSU (P54604) Hypothetical RNA pseudouridine synthase yhcT (EC 5.4.99.-)| (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 302 Score = 32.0 bits (71), Expect = 0.74 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 8/68 (11%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCE--------ALLSALPCSTASSGDPSSKPNLHLANRLDRDT 384 ++FED + +++KPAG+ L + + +G+ ++H RLD+DT Sbjct: 85 ILFEDNHMLIINKPAGIATHPNEDGQTGTLANLIAYHYQINGETCKVRHVH---RLDQDT 141 Query: 385 SGLMVITK 408 SG +V K Sbjct: 142 SGAIVFAK 149
>RLUE_HAEIN (P44827) Ribosomal large subunit pseudouridine synthase E (EC| 5.4.99.-) (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) Length = 240 Score = 31.6 bits (70), Expect = 0.97 Identities = 14/29 (48%), Positives = 21/29 (72%) Frame = +1 Query: 319 ASSGDPSSKPNLHLANRLDRDTSGLMVIT 405 A+ D S PN++ A RLDRD+ GL+++T Sbjct: 73 ATLKDFISIPNVYAAGRLDRDSEGLLILT 101
>RLUD_BUCBP (Q89AD9) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 317 Score = 31.6 bits (70), Expect = 0.97 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 8/68 (11%) Frame = +1 Query: 229 VVFEDEWLAVVDKP--------AGVYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDT 384 V++ED+ + V++K AG LL+AL ++ + P + +RLD+DT Sbjct: 87 VIYEDDDILVINKQDNFVVHPGAGNTSGTLLNALLHRDSTF---FNIPRAGIVHRLDKDT 143 Query: 385 SGLMVITK 408 +GLMVI K Sbjct: 144 TGLMVIAK 151
>YLYB_BACSU (Q45480) Hypothetical RNA pseudouridine synthase ylyB (EC 5.4.99.-)| (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 303 Score = 31.2 bits (69), Expect = 1.3 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 10/70 (14%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCE--------ALLSALP--CSTASSGDPSSKPNLHLANRLDR 378 + +ED+ + VV+KP G+ L++ L C+ S + +P + +R+D+ Sbjct: 82 IYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCTDLSGINGVMRPGI--VHRIDK 139 Query: 379 DTSGLMVITK 408 DTSGL+++ K Sbjct: 140 DTSGLLMVAK 149
>Y347_HELPY (O25114) Hypothetical RNA pseudouridine synthase HP0347 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 298 Score = 31.2 bits (69), Expect = 1.3 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 5/65 (7%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEAL-----LSALPCSTASSGDPSSKPNLHLANRLDRDTSGL 393 +VFE + V DKP VY S L C + G N H A+RLD +TSGL Sbjct: 71 LVFETKDFGVFDKPHQVYTHPKGYFYHESLLDCIQSHFGK-----NAHPAHRLDYETSGL 125 Query: 394 MVITK 408 ++ K Sbjct: 126 VLAGK 130
>RLUD_BLOFL (P59838) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 321 Score = 31.2 bits (69), Expect = 1.3 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 8/80 (10%) Frame = +1 Query: 229 VVFEDEWLAVVDKPA--------GVYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDT 384 +++ED + V++K + G Y +L+AL S S + + RLD+DT Sbjct: 88 IIYEDNDILVINKASNMVVHPGIGHYQGTVLNALLYRYPSILKISKQAGI--VQRLDKDT 145 Query: 385 SGLMVITKWHXVAAKLVKAF 444 +GLM+I K L+++F Sbjct: 146 TGLMIIAKTVSAYDNLLRSF 165
>RLUD_HAEDU (Q9L7A7) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 30.8 bits (68), Expect = 1.7 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 12/72 (16%) Frame = +1 Query: 229 VVFEDEWLAVVDKPA------------GVYCEALLSALPCSTASSGDPSSKPNLHLANRL 372 +V ED+ + +++KP G ALL P + P + +RL Sbjct: 86 IVHEDDDIIIINKPKNLVVHPGAGNPDGTVLNALLYYYP-------PIAEVPRAGIIHRL 138 Query: 373 DRDTSGLMVITK 408 D+DT+GLMV+ K Sbjct: 139 DKDTTGLMVVAK 150
>Y042_HAEIN (P43930) Hypothetical RNA pseudouridine synthase HI0042 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 224 Score = 30.8 bits (68), Expect = 1.7 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = +1 Query: 346 PNLHLANRLDRDTSGLMVITKWHXVAAKLVKAFTEH 453 P + L +RLD+ TSGL+++ AA+ + F+EH Sbjct: 43 PKVWLVHRLDKVTSGLLILALNAESAAEFSRLFSEH 78
>RLUE_VIBPA (Q87QY8) Ribosomal large subunit pseudouridine synthase E (EC| 5.4.99.-) (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) Length = 238 Score = 30.4 bits (67), Expect = 2.2 Identities = 14/30 (46%), Positives = 21/30 (70%) Frame = +1 Query: 349 NLHLANRLDRDTSGLMVITKWHXVAAKLVK 438 +++ A RLDRD+ GLMV+T + AKL + Sbjct: 93 DVYAAGRLDRDSEGLMVLTNDGILQAKLTQ 122
>RLUA_YERPE (Q8ZIK1) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 206 Score = 30.4 bits (67), Expect = 2.2 Identities = 18/74 (24%), Positives = 36/74 (48%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVITK 408 V+++D+ + VV+KP+G+ + + + + P +RLD TSG++V+ Sbjct: 3 VLYQDKHIMVVNKPSGLLSVPGRAPENKDSVMTRVQNDFPTAESVHRLDMATSGVIVVAL 62 Query: 409 WHXVAAKLVKAFTE 450 +L + F E Sbjct: 63 TKAAERELKRQFRE 76
>REV_BIV27 (P24097) REV protein (Anti-repression transactivator protein)| (ART/TRS) Length = 179 Score = 30.4 bits (67), Expect = 2.2 Identities = 15/25 (60%), Positives = 15/25 (60%) Frame = -1 Query: 180 PELHVLGDGRVGRGHRARVLPGRGR 106 PEL G GRGHRAR LPG R Sbjct: 49 PELPTSPGGGGGRGHRARKLPGERR 73
>RLUA_SALTY (Q8ZRV9) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 30.4 bits (67), Expect = 2.2 Identities = 18/74 (24%), Positives = 34/74 (45%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVITK 408 ++++DE + VV+KP+G+ + + P +RLD TSG++V+ Sbjct: 15 ILYQDEHIMVVNKPSGLLSVPGRLEAHKDSIMTRIQRDYPQAESVHRLDMATSGVIVVAL 74 Query: 409 WHXVAAKLVKAFTE 450 +L + F E Sbjct: 75 TKAAERELKRQFRE 88
>RLUA_SALTI (Q8Z9J5) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 30.4 bits (67), Expect = 2.2 Identities = 18/74 (24%), Positives = 34/74 (45%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVITK 408 ++++DE + VV+KP+G+ + + P +RLD TSG++V+ Sbjct: 15 ILYQDEHIMVVNKPSGLLSVPGRLEAHKDSIMTRIQRDYPQAESVHRLDMATSGVIVVAL 74 Query: 409 WHXVAAKLVKAFTE 450 +L + F E Sbjct: 75 TKAAERELKRQFRE 88
>RLUE_VIBVU (Q8DAS3) Ribosomal large subunit pseudouridine synthase E (EC| 5.4.99.-) (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) Length = 234 Score = 30.0 bits (66), Expect = 2.8 Identities = 14/29 (48%), Positives = 20/29 (68%) Frame = +1 Query: 352 LHLANRLDRDTSGLMVITKWHXVAAKLVK 438 ++ A RLDRD+ GLMV+T + AKL + Sbjct: 88 VYAAGRLDRDSEGLMVLTNDGILQAKLTQ 116
>Y1567_MYCBO (P0A5T3) Hypothetical RNA pseudouridine synthase Mb1567 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 308 Score = 30.0 bits (66), Expect = 2.8 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 8/80 (10%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLS----ALPCSTASSGDPSSKPNLH----LANRLDRDT 384 +++ D+ + VDKPA V A + + A++G + +H + +RLD T Sbjct: 83 ILYSDDDIVAVDKPAAVAAHASVGWTGPTVLGGLAAAGYRITTSGVHERQGIVHRLDVGT 142 Query: 385 SGLMVITKWHXVAAKLVKAF 444 SG+MV+ L +AF Sbjct: 143 SGVMVVAISERAYTVLKRAF 162
>Y1540_MYCTU (P0A5T2) Hypothetical RNA pseudouridine synthase Rv1540/MT1592 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 308 Score = 30.0 bits (66), Expect = 2.8 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 8/80 (10%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLS----ALPCSTASSGDPSSKPNLH----LANRLDRDT 384 +++ D+ + VDKPA V A + + A++G + +H + +RLD T Sbjct: 83 ILYSDDDIVAVDKPAAVAAHASVGWTGPTVLGGLAAAGYRITTSGVHERQGIVHRLDVGT 142 Query: 385 SGLMVITKWHXVAAKLVKAF 444 SG+MV+ L +AF Sbjct: 143 SGVMVVAISERAYTVLKRAF 162
>RLUE_XANAC (Q8PQN3) Ribosomal large subunit pseudouridine synthase E (EC| 5.4.99.-) (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) Length = 190 Score = 30.0 bits (66), Expect = 2.8 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Frame = +1 Query: 250 LAVVDKPAGVYCEALLSALPC--STASSGDPSSKPNLHLANRLDRDTSGLMVITKWHXVA 423 L +++KP GV + + P + A G P P+++ A RLD D+ GL+V+T +A Sbjct: 2 LVLLNKPYGVLSQFSDRSQPPKRTLAEFGLP---PDVYAAGRLDHDSEGLLVLTDDGALA 58 Query: 424 AKL 432 +L Sbjct: 59 HRL 61
>TRUC_VIBVU (Q8DBG5) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 245 Score = 29.6 bits (65), Expect = 3.7 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGV-----YCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGL 393 +V++DE+ V+KPAG+ + + + T LH RLDR TSG+ Sbjct: 4 IVYQDEYFVAVNKPAGMLVHRSWLDKHETQFVMQTLRDQIGQHVFPLH---RLDRPTSGV 60 Query: 394 MVITKWHXVAAKLVKAF 444 +V VA++++ F Sbjct: 61 LVFALSSEVASQVMPMF 77
>Y612_SYNY3 (P72581) Hypothetical RNA pseudouridine synthase slr0612 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 261 Score = 29.6 bits (65), Expect = 3.7 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +1 Query: 265 KPAGVYCEAL-LSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVIT 405 KP GV C+ SA P T D + P+L+ RLD+D+ GL+++T Sbjct: 46 KPYGVLCQFTDNSAHPRPTLK--DYINLPDLYPVGRLDQDSEGLLLLT 91
>RSUA_VIBCH (Q9KRK5) Ribosomal small subunit pseudouridine synthase A (EC| 5.4.99.-) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 231 Score = 29.6 bits (65), Expect = 3.7 Identities = 18/50 (36%), Positives = 27/50 (54%) Frame = +1 Query: 256 VVDKPAGVYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVIT 405 ++ KP GV C + + D + +LH A RLD DT+GL++IT Sbjct: 63 MMHKPDGVVCSHE-DGFNQTALTLLDEVNIQDLHFAGRLDVDTTGLLLIT 111
>PLD_STRAT (Q53728) Phospholipase D precursor (EC 3.1.4.4) (Choline| phosphatase) Length = 556 Score = 29.3 bits (64), Expect = 4.8 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = +1 Query: 268 PAGVYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTS 387 P V + +ALP STA + D P+L R RDTS Sbjct: 28 PVSVALTTVCAALPSSTAYAADTPPTPHLDAIERSLRDTS 67
>RSUA_VIBVU (Q8D8X2) Ribosomal small subunit pseudouridine synthase A (EC| 5.4.99.-) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 233 Score = 29.3 bits (64), Expect = 4.8 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 3/30 (10%) Frame = +1 Query: 331 DPSSKPNLHLANRLDRDTSGLMVIT---KW 411 D LH A RLD DT+GL++IT KW Sbjct: 87 DEVKMDELHFAGRLDVDTTGLVLITDDGKW 116
>RLUA_ECOL6 (Q8FL93) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 29.3 bits (64), Expect = 4.8 Identities = 18/74 (24%), Positives = 34/74 (45%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVITK 408 V+++D+ + VV+KP+G+ + + P +RLD TSG++V+ Sbjct: 15 VLYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVAL 74 Query: 409 WHXVAAKLVKAFTE 450 +L + F E Sbjct: 75 TKAAERELKRQFRE 88
>RSUA_PSEAE (Q9I5J6) Ribosomal small subunit pseudouridine synthase A (EC| 5.4.99.-) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 230 Score = 28.9 bits (63), Expect = 6.3 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 11/66 (16%) Frame = +1 Query: 241 DEWLAVVDKPAGVYCEALLSALPCSTASSGDPSS-----------KPNLHLANRLDRDTS 387 DE L KPA Y L + C +A+ DP + +LH+ RLD +T+ Sbjct: 50 DERLLQAGKPARYYM--LHKPMGCVSATR-DPQHPTVLDLFPEDLRDDLHIGGRLDYNTT 106 Query: 388 GLMVIT 405 GLM++T Sbjct: 107 GLMLLT 112
>RSUA_HAEIN (P45124) Ribosomal small subunit pseudouridine synthase A (EC| 5.4.99.-) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 232 Score = 28.9 bits (63), Expect = 6.3 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 8/67 (11%) Frame = +1 Query: 229 VVFEDEWLA--------VVDKPAGVYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDT 384 + FEDE L +++KP G C P P + LH A RLD DT Sbjct: 47 IYFEDELLTWIEEGQYFMLNKPQGCVCSNDDGDYPTIYQFFDYPLAG-KLHSAGRLDVDT 105 Query: 385 SGLMVIT 405 +GL+++T Sbjct: 106 TGLVLLT 112
>POL1_TBRVM (Q8B8X3) RNA1 polyprotein (P1) [Contains: P1A protein (1A) (protease| cofactor); Putative ATP-dependent helicase (EC 3.6.1.-) (NTP-binding protein) (NTB) (1B) (membrane-binding protein); Viral genome-linked protein (1C-VPg); Picornain 3C-like p Length = 2266 Score = 28.9 bits (63), Expect = 6.3 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = -1 Query: 144 RGHRARVLPGRGRRHHRVLYACSRSGDG 61 +G+RAR +P HHR YA S++GDG Sbjct: 1215 KGYRARNIP----IHHRYAYARSQAGDG 1238
>RLUA_SHIFL (P0AA38) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/74 (22%), Positives = 34/74 (45%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVITK 408 ++++D+ + VV+KP+G+ + + P +RLD TSG++V+ Sbjct: 15 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVAL 74 Query: 409 WHXVAAKLVKAFTE 450 +L + F E Sbjct: 75 TKAAERELKRQFRE 88
>RLUA_ECOLI (P0AA37) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/74 (22%), Positives = 34/74 (45%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVITK 408 ++++D+ + VV+KP+G+ + + P +RLD TSG++V+ Sbjct: 15 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVAL 74 Query: 409 WHXVAAKLVKAFTE 450 +L + F E Sbjct: 75 TKAAERELKRQFRE 88
>RLUA_ECO57 (Q8XA10) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/74 (22%), Positives = 34/74 (45%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVITK 408 ++++D+ + VV+KP+G+ + + P +RLD TSG++V+ Sbjct: 15 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVAL 74 Query: 409 WHXVAAKLVKAFTE 450 +L + F E Sbjct: 75 TKAAERELKRQFRE 88
>SMG1_HUMAN (Q96Q15) Serine/threonine-protein kinase SMG1 (EC 2.7.11.1) (SMG-1)| (hSMG-1) (Lambda/iota protein kinase C-interacting protein) (Lambda-interacting protein) (61E3.4) Length = 3657 Score = 28.9 bits (63), Expect = 6.3 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Frame = +1 Query: 247 WLAVVDKPAGVY---CEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVI 402 W VVD+ +Y C A + L + P LHL++R+++ T ++V+ Sbjct: 1729 WRKVVDRIFSLYKLSCSAYFTFLKLNAGQIPLDEDDPRLHLSHRVEQSTDDMIVM 1783
>RLUA_HAEIN (P44782) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 219 Score = 28.5 bits (62), Expect = 8.2 Identities = 20/74 (27%), Positives = 33/74 (44%) Frame = +1 Query: 229 VVFEDEWLAVVDKPAGVYCEALLSALPCSTASSGDPSSKPNLHLANRLDRDTSGLMVITK 408 ++++D L VV+KP+G+ +A S A+RLD TSG++V Sbjct: 16 IIYQDNHLCVVNKPSGLLSVPGNQPQYYDSAMSRVKEKFGFCEPAHRLDMATSGIIVFAL 75 Query: 409 WHXVAAKLVKAFTE 450 +L + F E Sbjct: 76 SKAADRELKRQFRE 89 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.129 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,577,904 Number of Sequences: 219361 Number of extensions: 537883 Number of successful extensions: 1674 Number of sequences better than 10.0: 106 Number of HSP's better than 10.0 without gapping: 1577 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1604 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
