ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baet97h12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK066380.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059L17, full insert sequence Length = 1969 Score = 250 bits (126), Expect = 2e-63 Identities = 204/230 (88%) Strand = Plus / Plus Query: 100 ttcctggacaacctatggtttagttgcagcaggggttgctgccttccttatcatatcagc 159 |||||||||||| |||||||| | ||||||||| ||||||| |||||||||||||||| Sbjct: 594 ttcctggacaacttatggttttatcgcagcagggattgctgctctccttatcatatcagc 653 Query: 160 agctggtgctctctactgccgagctaaaagggtggggactgtgaaaccttgggtcacagg 219 ||||||||| |||||||||||||||||| | |||||||||||| || |||| || || Sbjct: 654 agctggtgcattctactgccgagctaaaaagatggggactgtgaggccatgggcaacggg 713 Query: 220 acttagcggacaactgcaaaaagcttttgtaacaggtgtgcctgcactgaaacgatcaga 279 ||||||||| ||| ||||||| ||||||||||| |||||||||||| ||||||||||||| Sbjct: 714 acttagcgggcaattgcaaaaggcttttgtaaccggtgtgcctgcattgaaacgatcaga 773 Query: 280 gctggaatcagcgagcgaggatttcagcaatataattggttctacatcta 329 ||||||| ||||| |||||||||| |||||||||||||||| |||||||| Sbjct: 774 gctggaaacagcgtgcgaggattttagcaatataattggttgtacatcta 823
>dbj|AK061955.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F07, full insert sequence Length = 1740 Score = 250 bits (126), Expect = 2e-63 Identities = 204/230 (88%) Strand = Plus / Plus Query: 100 ttcctggacaacctatggtttagttgcagcaggggttgctgccttccttatcatatcagc 159 |||||||||||| |||||||| | ||||||||| ||||||| |||||||||||||||| Sbjct: 386 ttcctggacaacttatggttttatcgcagcagggattgctgctctccttatcatatcagc 445 Query: 160 agctggtgctctctactgccgagctaaaagggtggggactgtgaaaccttgggtcacagg 219 ||||||||| |||||||||||||||||| | |||||||||||| || |||| || || Sbjct: 446 agctggtgcattctactgccgagctaaaaagatggggactgtgaggccatgggcaacggg 505 Query: 220 acttagcggacaactgcaaaaagcttttgtaacaggtgtgcctgcactgaaacgatcaga 279 ||||||||| ||| ||||||| ||||||||||| |||||||||||| ||||||||||||| Sbjct: 506 acttagcgggcaattgcaaaaggcttttgtaaccggtgtgcctgcattgaaacgatcaga 565 Query: 280 gctggaatcagcgagcgaggatttcagcaatataattggttctacatcta 329 ||||||| ||||| |||||||||| |||||||||||||||| |||||||| Sbjct: 566 gctggaaacagcgtgcgaggattttagcaatataattggttgtacatcta 615
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 145 bits (73), Expect = 1e-31 Identities = 133/153 (86%) Strand = Plus / Minus Query: 100 ttcctggacaacctatggtttagttgcagcaggggttgctgccttccttatcatatcagc 159 |||||||||||| |||||||| | ||||||||| ||||||| |||||||||||||||| Sbjct: 10266147 ttcctggacaacttatggttttatcgcagcagggattgctgctctccttatcatatcagc 10266088 Query: 160 agctggtgctctctactgccgagctaaaagggtggggactgtgaaaccttgggtcacagg 219 ||||||||| |||||||||||||||||| | |||||||||||| || |||| || || Sbjct: 10266087 agctggtgcattctactgccgagctaaaaagatggggactgtgaggccatgggcaacggg 10266028 Query: 220 acttagcggacaactgcaaaaagcttttgtaac 252 ||||||||| ||| ||||||| ||||||||||| Sbjct: 10266027 acttagcgggcaattgcaaaaggcttttgtaac 10265995 Score = 113 bits (57), Expect = 4e-22 Identities = 72/77 (93%) Strand = Plus / Minus Query: 253 aggtgtgcctgcactgaaacgatcagagctggaatcagcgagcgaggatttcagcaatat 312 ||||||||||||| |||||||||||||||||||| ||||| |||||||||| |||||||| Sbjct: 10265917 aggtgtgcctgcattgaaacgatcagagctggaaacagcgtgcgaggattttagcaatat 10265858 Query: 313 aattggttctacatcta 329 |||||||| |||||||| Sbjct: 10265857 aattggttgtacatcta 10265841
>gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045E22, from chromosome 3, complete sequence Length = 160920 Score = 145 bits (73), Expect = 1e-31 Identities = 133/153 (86%) Strand = Plus / Minus Query: 100 ttcctggacaacctatggtttagttgcagcaggggttgctgccttccttatcatatcagc 159 |||||||||||| |||||||| | ||||||||| ||||||| |||||||||||||||| Sbjct: 127560 ttcctggacaacttatggttttatcgcagcagggattgctgctctccttatcatatcagc 127501 Query: 160 agctggtgctctctactgccgagctaaaagggtggggactgtgaaaccttgggtcacagg 219 ||||||||| |||||||||||||||||| | |||||||||||| || |||| || || Sbjct: 127500 agctggtgcattctactgccgagctaaaaagatggggactgtgaggccatgggcaacggg 127441 Query: 220 acttagcggacaactgcaaaaagcttttgtaac 252 ||||||||| ||| ||||||| ||||||||||| Sbjct: 127440 acttagcgggcaattgcaaaaggcttttgtaac 127408 Score = 113 bits (57), Expect = 4e-22 Identities = 72/77 (93%) Strand = Plus / Minus Query: 253 aggtgtgcctgcactgaaacgatcagagctggaatcagcgagcgaggatttcagcaatat 312 ||||||||||||| |||||||||||||||||||| ||||| |||||||||| |||||||| Sbjct: 127330 aggtgtgcctgcattgaaacgatcagagctggaaacagcgtgcgaggattttagcaatat 127271 Query: 313 aattggttctacatcta 329 |||||||| |||||||| Sbjct: 127270 aattggttgtacatcta 127254
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 145 bits (73), Expect = 1e-31 Identities = 133/153 (86%) Strand = Plus / Minus Query: 100 ttcctggacaacctatggtttagttgcagcaggggttgctgccttccttatcatatcagc 159 |||||||||||| |||||||| | ||||||||| ||||||| |||||||||||||||| Sbjct: 10264248 ttcctggacaacttatggttttatcgcagcagggattgctgctctccttatcatatcagc 10264189 Query: 160 agctggtgctctctactgccgagctaaaagggtggggactgtgaaaccttgggtcacagg 219 ||||||||| |||||||||||||||||| | |||||||||||| || |||| || || Sbjct: 10264188 agctggtgcattctactgccgagctaaaaagatggggactgtgaggccatgggcaacggg 10264129 Query: 220 acttagcggacaactgcaaaaagcttttgtaac 252 ||||||||| ||| ||||||| ||||||||||| Sbjct: 10264128 acttagcgggcaattgcaaaaggcttttgtaac 10264096 Score = 113 bits (57), Expect = 4e-22 Identities = 72/77 (93%) Strand = Plus / Minus Query: 253 aggtgtgcctgcactgaaacgatcagagctggaatcagcgagcgaggatttcagcaatat 312 ||||||||||||| |||||||||||||||||||| ||||| |||||||||| |||||||| Sbjct: 10264018 aggtgtgcctgcattgaaacgatcagagctggaaacagcgtgcgaggattttagcaatat 10263959 Query: 313 aattggttctacatcta 329 |||||||| |||||||| Sbjct: 10263958 aattggttgtacatcta 10263942
>ref|NM_185568.2| Oryza sativa (japonica cultivar-group), mRNA Length = 2009 Score = 93.7 bits (47), Expect = 3e-16 Identities = 92/107 (85%) Strand = Plus / Plus Query: 224 agcggacaactgcaaaaagcttttgtaacaggtgtgcctgcactgaaacgatcagagctg 283 ||||| ||| ||||| ||| ||||| |||||||| ||| || ||||||| || |||||| Sbjct: 723 agcgggcaattgcaacgagcatttgtcacaggtgtaccttcattgaaacggtctgagctg 782 Query: 284 gaatcagcgagcgaggatttcagcaatataattggttctacatctag 330 ||| |||| | ||||||||||||||||||||||||||||||||||| Sbjct: 783 gaagcagcatgtgaggatttcagcaatataattggttctacatctag 829
>dbj|AK069112.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008B11, full insert sequence Length = 2009 Score = 93.7 bits (47), Expect = 3e-16 Identities = 92/107 (85%) Strand = Plus / Plus Query: 224 agcggacaactgcaaaaagcttttgtaacaggtgtgcctgcactgaaacgatcagagctg 283 ||||| ||| ||||| ||| ||||| |||||||| ||| || ||||||| || |||||| Sbjct: 723 agcgggcaattgcaacgagcatttgtcacaggtgtaccttcattgaaacggtctgagctg 782 Query: 284 gaatcagcgagcgaggatttcagcaatataattggttctacatctag 330 ||| |||| | ||||||||||||||||||||||||||||||||||| Sbjct: 783 gaagcagcatgtgaggatttcagcaatataattggttctacatctag 829
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 85.7 bits (43), Expect = 8e-14 Identities = 70/79 (88%) Strand = Plus / Plus Query: 252 caggtgtgcctgcactgaaacgatcagagctggaatcagcgagcgaggatttcagcaata 311 ||||||| ||| || ||||||| || ||||||||| |||| | |||||||||||||||| Sbjct: 29432170 caggtgtaccttcattgaaacggtctgagctggaagcagcatgtgaggatttcagcaata 29432229 Query: 312 taattggttctacatctag 330 ||||||||||||||||||| Sbjct: 29432230 taattggttctacatctag 29432248
>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0034A04 Length = 151263 Score = 85.7 bits (43), Expect = 8e-14 Identities = 70/79 (88%) Strand = Plus / Plus Query: 252 caggtgtgcctgcactgaaacgatcagagctggaatcagcgagcgaggatttcagcaata 311 ||||||| ||| || ||||||| || ||||||||| |||| | |||||||||||||||| Sbjct: 95092 caggtgtaccttcattgaaacggtctgagctggaagcagcatgtgaggatttcagcaata 95151 Query: 312 taattggttctacatctag 330 ||||||||||||||||||| Sbjct: 95152 taattggttctacatctag 95170
>gb|AY212968.1| Gossypium hirsutum ser-thr protein kinase mRNA, partial cds Length = 1293 Score = 44.1 bits (22), Expect = 0.28 Identities = 97/122 (79%) Strand = Plus / Plus Query: 198 ctgtgaaaccttgggtcacaggacttagcggacaactgcaaaaagcttttgtaacaggtg 257 |||| |||||||||| ||| ||| | || || || ||||| || || ||||||||||||| Sbjct: 8 ctgtcaaaccttgggccacgggattaagtgggcagctgcagaaggcatttgtaacaggtg 67 Query: 258 tgcctgcactgaaacgatcagagctggaatcagcgagcgaggatttcagcaatataattg 317 | || || || |||||||| || ||| |||| | ||||||||||||||| |||||| Sbjct: 68 taccgaagctcaagcgatcagaacttgaagcagcttgtgaggatttcagcaatgtaattg 127 Query: 318 gt 319 || Sbjct: 128 gt 129
>emb|Z82279.2|CER03C1 Caenorhabditis elegans Cosmid R03C1, complete sequence Length = 41369 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 309 atataattggttctacatcta 329 ||||||||||||||||||||| Sbjct: 21440 atataattggttctacatcta 21460
>gb|AC094527.7| Rattus norvegicus 5 BAC CH230-4L11 (Children's Hospital Oakland Research Institute) complete sequence Length = 216616 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 165 gtgctctctactgccgagcta 185 ||||||||||||||||||||| Sbjct: 79176 gtgctctctactgccgagcta 79196
>ref|XM_416610.1| PREDICTED: Gallus gallus similar to interphotoreceptor matrix proteoglycan 2; interphotoreceptor matrix proteoglycan 200; Spacrcan protein (LOC418393), mRNA Length = 7214 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 gaggatttcagcaatataat 315 |||||||||||||||||||| Sbjct: 3621 gaggatttcagcaatataat 3602
>gb|AC163346.3| Mus musculus BAC clone RP23-370A2 from chromosome 6, complete sequence Length = 173936 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 gggtggggactgtgaaacct 208 |||||||||||||||||||| Sbjct: 29047 gggtggggactgtgaaacct 29028
>gb|AC122050.3| Mus musculus BAC clone RP24-457L7 from chromosome 6, complete sequence Length = 179078 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 gggtggggactgtgaaacct 208 |||||||||||||||||||| Sbjct: 30613 gggtggggactgtgaaacct 30632
>gb|AC023248.20| Mus musculus chromosome 7, clone RP23-124B2, complete sequence Length = 211123 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 agctgggggagctgggcacgatca 63 ||||||||||||||||||| |||| Sbjct: 125649 agctgggggagctgggcactatca 125672
>dbj|AB204591.1| Gallus gallus mRNA for SPACRCAN, complete cds Length = 4888 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 gaggatttcagcaatataat 315 |||||||||||||||||||| Sbjct: 1325 gaggatttcagcaatataat 1306
>dbj|AP001916.1| Mus musculus genomic DNA, chromosome 7, clone:B131C, complete sequence Length = 40333 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 agctgggggagctgggcacgatca 63 ||||||||||||||||||| |||| Sbjct: 27394 agctgggggagctgggcactatca 27417
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome Length = 5057531 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 agctggaatcagcgagcgag 298 |||||||||||||||||||| Sbjct: 3506718 agctggaatcagcgagcgag 3506699
>gb|AC007179.3| Homo sapiens BAC clone RP11-569H17 from 2, complete sequence Length = 159791 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 tcaaactccatctcactctg 89 |||||||||||||||||||| Sbjct: 129769 tcaaactccatctcactctg 129750
>emb|AJ271885.2|MMU271885 Mus musculus partial Kcnq1 gene for potassium channel protein and associated 187740 bp genomic fragment Length = 187740 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 agctgggggagctgggcacgatca 63 ||||||||||||||||||| |||| Sbjct: 37045 agctgggggagctgggcactatca 37068
>emb|AL589670.21| Mouse DNA sequence from clone RP23-414K1 on chromosome 15, complete sequence Length = 203230 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 gcagctgggggagctgggca 57 |||||||||||||||||||| Sbjct: 117160 gcagctgggggagctgggca 117179
>dbj|AP001293.1| Mus musculus genomic DNA, chromosome 7, clone:B131, complete sequence Length = 108333 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 agctgggggagctgggcacgatca 63 ||||||||||||||||||| |||| Sbjct: 95394 agctgggggagctgggcactatca 95417 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,180,117 Number of Sequences: 3902068 Number of extensions: 3180117 Number of successful extensions: 55048 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54942 Number of HSP's gapped (non-prelim): 105 length of query: 331 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 309 effective length of database: 17,147,199,772 effective search space: 5298484729548 effective search space used: 5298484729548 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
