ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet97h10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
2dbj|AP004731.3| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.016
4dbj|AP005821.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.016
5dbj|AP004802.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.061
6gb|AE017352.1| Cryptococcus neoformans var. neoformans JEC21 chr... 44 0.24
7ref|XM_567952.1| Cryptococcus neoformans var. neoformans JEC21 h... 44 0.24
8dbj|AP005709.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.24
9dbj|AP005860.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.24
10gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 42 0.96
11gb|AC116575.4| Mus musculus BAC clone RP23-263I24 from 9, comple... 42 0.96
12gb|AC136903.6| Mus musculus chromosome 9, clone RP23-475J16, com... 42 0.96
13emb|AL133229.40| Human DNA sequence from clone RP5-1167E19 on ch... 42 0.96
14dbj|AK159264.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 42 0.96
15gb|AC158676.12| Mus musculus 6 BAC RP23-146N13 (Roswell Park Can... 42 0.96
16dbj|AK018135.1| Mus musculus adult male medulla oblongata cDNA, ... 42 0.96
17gb|AC156631.2| Mus musculus BAC clone RP24-501O22 from chromosom... 42 0.96
18gb|AC155845.3| Mus musculus 6 BAC RP24-399D24 (Roswell Park Canc... 42 0.96
19dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.96
20gb|BC095987.1| Mus musculus RIKEN cDNA 6330407D12 gene, mRNA (cD... 42 0.96
21ref|NM_175098.2| Mus musculus RIKEN cDNA 6330407D12 gene (633040... 42 0.96
22gb|AF525490.2| Streptomyces griseus fredericamycin biosynthetic ... 42 0.96
23gb|AC007942.16|AC007942 Mus musculus chromosome , clone CT7-56G4... 42 0.96
24dbj|AP003686.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.96
25dbj|AK109673.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.96
26gb|AY108342.1| Zea mays PCO124891 mRNA sequence 42 0.96
27gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.96
28emb|AL713900.4|CNS07YQ0 Oryza sativa chromosome 12, . BAC OJ1126... 42 0.96
29dbj|AP004370.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 0.96
30ref|NM_183857.1| Oryza sativa (japonica cultivar-group), predic... 40 3.8
31ref|NM_193745.1| Oryza sativa (japonica cultivar-group), predic... 40 3.8
32ref|XM_476546.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.8
33gb|BT018901.1| Zea mays clone EL01T0208A08.d mRNA sequence 40 3.8
34gb|AY020392.1| Oryza sativa microsatellite MRG2717 containing (G... 40 3.8
35ref|XM_960357.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.8
36ref|XM_331875.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.8
37gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
38gb|AC140022.11| Medicago truncatula clone mth2-11g20, complete s... 40 3.8
39gb|AC123519.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
40emb|BX842634.1| Neurospora crassa DNA linkage group I BAC contig... 40 3.8
41emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete ... 40 3.8
42emb|BX640429.1| Bordetella parapertussis strain 12822, complete ... 40 3.8
43emb|BX640414.1| Bordetella pertussis strain Tohama I, complete g... 40 3.8
44emb|AL663016.5|OSJN00216 Oryza sativa genomic DNA, chromosome 4,... 40 3.8
45emb|AL645626.10| Mouse DNA sequence from clone RP23-397J5 on chr... 40 3.8
46gb|AF332215.2| Malus x domestica transcription factor AHAP2 (AHA... 40 3.8
47dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
48dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
49dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
50dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
51dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
52dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
53dbj|AP003435.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
54dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 3.8
55dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 3.8
56dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
57dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
58dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
59dbj|AP004338.4| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
60dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
61emb|AL772343.17| Mouse DNA sequence from clone RP23-196N14 on ch... 40 3.8
62dbj|AK107450.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
63dbj|AK100480.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
64gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
65emb|AL954154.5|CNS08CCS Oryza sativa chromosome 12, . BAC OSJNBb... 40 3.8
66emb|AL928776.4|CNS08CC6 Oryza sativa chromosome 12, . BAC OSJNBa... 40 3.8
67emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb... 40 3.8 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 112/138 (81%)
 Strand = Plus / Minus

                                                                            
Query: 152      tccacaccccgccctccccgtcctactccccgctcctgctctcctccgccaggaacctcc 211
                |||||||||||  |||| |||||||| |||||   ||  ||||||||  | |||||||||
Sbjct: 20389676 tccacaccccgggctccgcgtcctacgccccgacgctcgtctcctccatccggaacctcc 20389617

                                                                            
Query: 212      gcttcgtcacgcccggcaccccacggcctctcgcgatcgtcgccgccggggaggcctccc 271
                ||||||||||||| || || ||  |||| ||||| |||||||| ||||  |||||   ||
Sbjct: 20389616 gcttcgtcacgccggggacgccgaggccgctcgccatcgtcgcggccgccgaggcgggcc 20389557

                                  
Query: 272      acgcccaggccgccgtgc 289
                ||||||||||||| ||||
Sbjct: 20389556 acgcccaggccgcggtgc 20389539



 Score = 46.1 bits (23), Expect = 0.061
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 113      tcctccactgcctcgccgccgcc 135
                |||||||||||||||||||||||
Sbjct: 14758219 tcctccactgcctcgccgccgcc 14758197



 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 265      gcctcccacgcccaggccgccgtgc 289
                |||||||||| ||||||||||||||
Sbjct: 20486352 gcctcccacgtccaggccgccgtgc 20486328
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>dbj|AP004731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0016D02
          Length = 157822

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 112/138 (81%)
 Strand = Plus / Minus

                                                                          
Query: 152    tccacaccccgccctccccgtcctactccccgctcctgctctcctccgccaggaacctcc 211
              |||||||||||  |||| |||||||| |||||   ||  ||||||||  | |||||||||
Sbjct: 113071 tccacaccccgggctccgcgtcctacgccccgacgctcgtctcctccatccggaacctcc 113012

                                                                          
Query: 212    gcttcgtcacgcccggcaccccacggcctctcgcgatcgtcgccgccggggaggcctccc 271
              ||||||||||||| || || ||  |||| ||||| |||||||| ||||  |||||   ||
Sbjct: 113011 gcttcgtcacgccggggacgccgaggccgctcgccatcgtcgcggccgccgaggcgggcc 112952

                                
Query: 272    acgcccaggccgccgtgc 289
              ||||||||||||| ||||
Sbjct: 112951 acgcccaggccgcggtgc 112934
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
              complete sequence
          Length = 22696651

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 112    ttcctccactgcctcgccgccgcc 135
              ||||||||||||||||||||||||
Sbjct: 588478 ttcctccactgcctcgccgccgcc 588455



 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 115    ctccactgcctcgccgccgcca 136
              ||||||||||||||||||||||
Sbjct: 995678 ctccactgcctcgccgccgcca 995699
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>dbj|AP005821.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0094B20
          Length = 146270

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 112   ttcctccactgcctcgccgccgcc 135
             ||||||||||||||||||||||||
Sbjct: 41488 ttcctccactgcctcgccgccgcc 41465
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>dbj|AP004802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0640D01
          Length = 164996

 Score = 46.1 bits (23), Expect = 0.061
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 113   tcctccactgcctcgccgccgcc 135
             |||||||||||||||||||||||
Sbjct: 69303 tcctccactgcctcgccgccgcc 69281
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>gb|AE017352.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 12, complete
             sequence
          Length = 906719

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 150   cctccacaccccgccctccccg 171
             ||||||||||||||||||||||
Sbjct: 80715 cctccacaccccgccctccccg 80694
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>ref|XM_567952.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNL03940) partial mRNA
          Length = 1444

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 150 cctccacaccccgccctccccg 171
           ||||||||||||||||||||||
Sbjct: 888 cctccacaccccgccctccccg 909
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>dbj|AP005709.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0646B04
          Length = 178896

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 115    ctccactgcctcgccgccgcca 136
              ||||||||||||||||||||||
Sbjct: 159805 ctccactgcctcgccgccgcca 159826
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>dbj|AP005860.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1134_E08
          Length = 153002

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 115   ctccactgcctcgccgccgcca 136
             ||||||||||||||||||||||
Sbjct: 33371 ctccactgcctcgccgccgcca 33392
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 90    ctccgcgtccaccgccgatgc 110
             |||||||||||||||||||||
Sbjct: 73435 ctccgcgtccaccgccgatgc 73455
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>gb|AC116575.4| Mus musculus BAC clone RP23-263I24 from 9, complete sequence
          Length = 208678

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 135   catcccgccccatctcctccacaccccgccctc 167
             |||||| ||||||||||||| |||||| |||||
Sbjct: 73425 catccctccccatctcctccccaccccaccctc 73457
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>gb|AC136903.6| Mus musculus chromosome 9, clone RP23-475J16, complete sequence
          Length = 180530

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 64  ctctcctgcaacacatccatttcct 88
           |||||||| ||||||||||||||||
Sbjct: 224 ctctcctgaaacacatccatttcct 248
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>emb|AL133229.40| Human DNA sequence from clone RP5-1167E19 on chromosome 20 Contains
             STSs, GSSs and a CpG island, complete sequence
          Length = 161776

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 45    cctcctggccctttgcatcctctcc 69
             ||||||||||||||| |||||||||
Sbjct: 89979 cctcctggccctttgaatcctctcc 90003
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>dbj|AK159264.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
           library, clone:I420013G23 product:Weakly similar to
           N-acetylglucosaminyltransferase, full insert sequence
          Length = 2301

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 183 gctcctgctctcctccgccag 203
           |||||||||||||||||||||
Sbjct: 505 gctcctgctctcctccgccag 485
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>gb|AC158676.12| Mus musculus 6 BAC RP23-146N13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 204560

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 141    gccccatctcctccacacccc 161
              |||||||||||||||||||||
Sbjct: 150784 gccccatctcctccacacccc 150764
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>dbj|AK018135.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
           enriched library, clone:6330407D12 product:weakly
           similar to N-ACETYLGLUCOSAMINYLTRANSFERASE (FRAGMENT)
           [Homo sapiens], full insert sequence
          Length = 2271

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 183 gctcctgctctcctccgccag 203
           |||||||||||||||||||||
Sbjct: 476 gctcctgctctcctccgccag 456
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>gb|AC156631.2| Mus musculus BAC clone RP24-501O22 from chromosome 9, complete sequence
          Length = 165660

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 64     ctctcctgcaacacatccatttcct 88
              |||||||| ||||||||||||||||
Sbjct: 128436 ctctcctgaaacacatccatttcct 128460
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>gb|AC155845.3| Mus musculus 6 BAC RP24-399D24 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 145877

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 183   gctcctgctctcctccgccag 203
             |||||||||||||||||||||
Sbjct: 94268 gctcctgctctcctccgccag 94248
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 114      cctccactgcctcgccgccgc 134
                |||||||||||||||||||||
Sbjct: 20045573 cctccactgcctcgccgccgc 20045553



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 122     gcctcgccgccgccatcccg 141
               ||||||||||||||||||||
Sbjct: 8835438 gcctcgccgccgccatcccg 8835457



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 83      tttcctcctccgcgtccaccgccg 106
               ||||||||||||| ||||||||||
Sbjct: 1102860 tttcctcctccgcttccaccgccg 1102837
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>gb|BC095987.1| Mus musculus RIKEN cDNA 6330407D12 gene, mRNA (cDNA clone
           MGC:106234 IMAGE:5365989), complete cds
          Length = 2249

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 183 gctcctgctctcctccgccag 203
           |||||||||||||||||||||
Sbjct: 335 gctcctgctctcctccgccag 315
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>ref|NM_175098.2| Mus musculus RIKEN cDNA 6330407D12 gene (6330407D12Rik), mRNA
          Length = 2271

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 183 gctcctgctctcctccgccag 203
           |||||||||||||||||||||
Sbjct: 476 gctcctgctctcctccgccag 456
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>gb|AF525490.2| Streptomyces griseus fredericamycin biosynthetic gene cluster,
            complete sequence
          Length = 33064

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 242  tcgcgatcgtcgccgccggggaggc 266
            ||||||||||||||||| |||||||
Sbjct: 8452 tcgcgatcgtcgccgcccgggaggc 8476
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>gb|AC007942.16|AC007942 Mus musculus chromosome , clone CT7-56G4, complete sequence
          Length = 122955

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 141    gccccatctcctccacacccc 161
              |||||||||||||||||||||
Sbjct: 116091 gccccatctcctccacacccc 116071
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>dbj|AP003686.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0659D09
          Length = 168253

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 265   gcctcccacgcccaggccgccgtgc 289
             |||||||||| ||||||||||||||
Sbjct: 58647 gcctcccacgtccaggccgccgtgc 58623
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>dbj|AK109673.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-B05, full
           insert sequence
          Length = 1972

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 265 gcctcccacgcccaggccgccgtgc 289
           |||||||||| ||||||||||||||
Sbjct: 320 gcctcccacgtccaggccgccgtgc 344
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>gb|AY108342.1| Zea mays PCO124891 mRNA sequence
          Length = 1387

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 132 cgccatcccgccccatctcctccac 156
           ||||||||||| |||||||||||||
Sbjct: 151 cgccatcccgctccatctcctccac 175
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 114      cctccactgcctcgccgccgc 134
                |||||||||||||||||||||
Sbjct: 19971787 cctccactgcctcgccgccgc 19971767



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 122     gcctcgccgccgccatcccg 141
               ||||||||||||||||||||
Sbjct: 8835321 gcctcgccgccgccatcccg 8835340



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 83      tttcctcctccgcgtccaccgccg 106
               ||||||||||||| ||||||||||
Sbjct: 1102860 tttcctcctccgcttccaccgccg 1102837
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>emb|AL713900.4|CNS07YQ0 Oryza sativa chromosome 12, . BAC OJ1126_F07 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 99791

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 114   cctccactgcctcgccgccgc 134
             |||||||||||||||||||||
Sbjct: 25735 cctccactgcctcgccgccgc 25715
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>dbj|AP004370.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-512I24, complete
              sequences
          Length = 193212

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 9      atcaaacatgtcaagaagccgggca 33
              |||||||||||||| ||||||||||
Sbjct: 120991 atcaaacatgtcaacaagccgggca 121015
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>ref|NM_183857.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 372

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 125 tcgccgccgccatcccgccc 144
           ||||||||||||||||||||
Sbjct: 217 tcgccgccgccatcccgccc 198
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>ref|NM_193745.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 735

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 122 gcctcgccgccgccatcccg 141
           ||||||||||||||||||||
Sbjct: 559 gcctcgccgccgccatcccg 578
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>ref|XM_476546.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1827

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 248 tcgtcgccgccggggaggcctccc 271
           |||||||||||| |||||||||||
Sbjct: 188 tcgtcgccgccgaggaggcctccc 211
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>gb|BT018901.1| Zea mays clone EL01T0208A08.d mRNA sequence
          Length = 1231

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  ctccgcgtccaccgccgatg 109
           ||||||||||||||||||||
Sbjct: 105 ctccgcgtccaccgccgatg 124
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>gb|AY020392.1| Oryza sativa microsatellite MRG2717 containing (GA)X16, closest to
           marker C104A , genomic sequence
          Length = 232

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 83  tttcctcctccgcgtccaccgccg 106
           ||||||||||||| ||||||||||
Sbjct: 3   tttcctcctccgcctccaccgccg 26
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>ref|XM_960357.1| Neurospora crassa OR74A hypothetical protein (NCU02677.1) partial
           mRNA
          Length = 3507

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 183 gctcctgctctcctccgcca 202
           ||||||||||||||||||||
Sbjct: 31  gctcctgctctcctccgcca 50
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>ref|XM_331875.1| Neurospora crassa OR74A hypothetical protein (NCU02677.1) partial
           mRNA
          Length = 3507

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 183 gctcctgctctcctccgcca 202
           ||||||||||||||||||||
Sbjct: 31  gctcctgctctcctccgcca 50
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>gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBb0099O15, complete sequence
          Length = 137357

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 119  actgcctcgccgccgccatc 138
            ||||||||||||||||||||
Sbjct: 6981 actgcctcgccgccgccatc 7000
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>gb|AC140022.11| Medicago truncatula clone mth2-11g20, complete sequence
          Length = 104305

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   atctcctccacaccccgccc 165
             ||||||||||||||||||||
Sbjct: 34891 atctcctccacaccccgccc 34872
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>gb|AC123519.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0017B18, complete sequence
          Length = 150279

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 83    tttcctcctccgcgtccaccgccg 106
             ||||||||||||| ||||||||||
Sbjct: 70086 tttcctcctccgcctccaccgccg 70063
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>emb|BX842634.1| Neurospora crassa DNA linkage group I BAC contig B16B8
          Length = 138191

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    gctcctgctctcctccgcca 202
              ||||||||||||||||||||
Sbjct: 104469 gctcctgctctcctccgcca 104488
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>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16
          Length = 348624

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    ctcgcgatcgtcgccgccgg 260
              ||||||||||||||||||||
Sbjct: 168842 ctcgcgatcgtcgccgccgg 168861
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>emb|BX640429.1| Bordetella parapertussis strain 12822, complete genome; segment 7/14
          Length = 344321

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    ctcgcgatcgtcgccgccgg 260
              ||||||||||||||||||||
Sbjct: 119079 ctcgcgatcgtcgccgccgg 119098
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>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12
          Length = 343243

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   ctcgcgatcgtcgccgccgg 260
             ||||||||||||||||||||
Sbjct: 85438 ctcgcgatcgtcgccgccgg 85419
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>emb|AL663016.5|OSJN00216 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0076A22,
              complete sequence
          Length = 131489

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    gcctcgccgccgccatcccg 141
              ||||||||||||||||||||
Sbjct: 122610 gcctcgccgccgccatcccg 122591
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>emb|AL645626.10| Mouse DNA sequence from clone RP23-397J5 on chromosome 11 Contains part
              of the Accn1 gene for neuronal amiloride-sensitive cation
              channel 1 (degenerin), a CpG island and a novel gene,
              complete sequence
          Length = 170821

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    gctcctgctctcctccgcca 202
              ||||||||||||||||||||
Sbjct: 163613 gctcctgctctcctccgcca 163594
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>gb|AF332215.2| Malus x domestica transcription factor AHAP2 (AHAP2) mRNA, complete
           cds
          Length = 2234

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 254 ccgccggggaggcctcccac 273
           ||||||||||||||||||||
Sbjct: 725 ccgccggggaggcctcccac 744
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 122      gcctcgccgccgccatcccg 141
                ||||||||||||||||||||
Sbjct: 18159726 gcctcgccgccgccatcccg 18159707
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 83      tttcctcctccgcgtccaccgccg 106
               ||||||||||||| ||||||||||
Sbjct: 1174280 tttcctcctccgcctccaccgccg 1174257
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 122      gcctcgccgccgccatcccg 141
                ||||||||||||||||||||
Sbjct: 24788181 gcctcgccgccgccatcccg 24788200



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 248     tcgtcgccgccggggaggcctccc 271
               |||||||||||| |||||||||||
Sbjct: 1889018 tcgtcgccgccgaggaggcctccc 1889041
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 119      actgcctcgccgccgccatc 138
                ||||||||||||||||||||
Sbjct: 23616976 actgcctcgccgccgccatc 23616995
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 122      gcctcgccgccgccatcccg 141
                ||||||||||||||||||||
Sbjct: 22974216 gcctcgccgccgccatcccg 22974235
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 122      gcctcgccgccgccatcccg 141
                ||||||||||||||||||||
Sbjct: 17860065 gcctcgccgccgccatcccg 17860046



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 125      tcgccgccgccatcccgccc 144
                ||||||||||||||||||||
Sbjct: 12725245 tcgccgccgccatcccgccc 12725226
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>dbj|AP003435.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0455H03
          Length = 175947

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    gcctcgccgccgccatcccg 141
              ||||||||||||||||||||
Sbjct: 107187 gcctcgccgccgccatcccg 107168
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 185     tcctgctctcctccgccagg 204
               ||||||||||||||||||||
Sbjct: 8863005 tcctgctctcctccgccagg 8862986



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    ctcgcgatcgtcgccgccgg 260
              ||||||||||||||||||||
Sbjct: 418736 ctcgcgatcgtcgccgccgg 418755
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 243     cgcgatcgtcgccgccgggg 262
               ||||||||||||||||||||
Sbjct: 4887563 cgcgatcgtcgccgccgggg 4887582
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>dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0489E06
          Length = 140229

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 125  tcgccgccgccatcccgccc 144
            ||||||||||||||||||||
Sbjct: 5644 tcgccgccgccatcccgccc 5625
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>dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0554D10
          Length = 158723

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   tcgccgccgccatcccgccc 144
             ||||||||||||||||||||
Sbjct: 92274 tcgccgccgccatcccgccc 92255
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>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0016G10
          Length = 143211

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   gcctcgccgccgccatcccg 141
             ||||||||||||||||||||
Sbjct: 94018 gcctcgccgccgccatcccg 94037
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>dbj|AP004338.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0507H12
          Length = 143030

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 248   tcgtcgccgccggggaggcctccc 271
             |||||||||||| |||||||||||
Sbjct: 93597 tcgtcgccgccgaggaggcctccc 93620
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>dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0493C06
          Length = 158923

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   gcctcgccgccgccatcccg 141
             ||||||||||||||||||||
Sbjct: 22632 gcctcgccgccgccatcccg 22651
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>emb|AL772343.17| Mouse DNA sequence from clone RP23-196N14 on chromosome 4, complete
              sequence
          Length = 154059

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 163    ccctccccgtcctactccccgctcctgctctc 194
              |||||||| |||||| |||| |||||||||||
Sbjct: 125748 ccctccccttcctacacccctctcctgctctc 125779
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>dbj|AK107450.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-C04, full
           insert sequence
          Length = 1505

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 122 gcctcgccgccgccatcccg 141
           ||||||||||||||||||||
Sbjct: 179 gcctcgccgccgccatcccg 160
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>dbj|AK100480.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023095I15, full
           insert sequence
          Length = 2974

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 125 tcgccgccgccatcccgccc 144
           ||||||||||||||||||||
Sbjct: 156 tcgccgccgccatcccgccc 137
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 83      tttcctcctccgcgtccaccgccg 106
               ||||||||||||| ||||||||||
Sbjct: 1172001 tttcctcctccgcctccaccgccg 1171978
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>emb|AL954154.5|CNS08CCS Oryza sativa chromosome 12, . BAC OSJNBb0072E04 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 151176

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   gcctcgccgccgccatcccg 141
             ||||||||||||||||||||
Sbjct: 24067 gcctcgccgccgccatcccg 24086
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>emb|AL928776.4|CNS08CC6 Oryza sativa chromosome 12, . BAC OSJNBa0036A15 of library OSJNBa
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 195500

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 122  gcctcgccgccgccatcccg 141
            ||||||||||||||||||||
Sbjct: 6731 gcctcgccgccgccatcccg 6712
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>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 126974

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 83    tttcctcctccgcgtccaccgccg 106
             ||||||||||||| ||||||||||
Sbjct: 41843 tttcctcctccgcttccaccgccg 41820


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,568,968
Number of Sequences: 3902068
Number of extensions: 2568968
Number of successful extensions: 65136
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63697
Number of HSP's gapped (non-prelim): 1437
length of query: 289
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 267
effective length of database: 17,147,199,772
effective search space: 4578302339124
effective search space used: 4578302339124
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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