ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet97h04 |
|---|---|
| Clone Library Name | barley_pub |
>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 105 bits (263), Expect = 2e-23 Identities = 59/80 (73%), Positives = 59/80 (73%) Frame = +1 Query: 130 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXX 309 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQ Sbjct: 9 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQVATAPSPVTTSPGSTASSPSG 68 Query: 310 KKTLRQGVVVITGASSGLGL 369 KKTLRQGVVVITGASSGLGL Sbjct: 69 KKTLRQGVVVITGASSGLGL 88
>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 104 bits (260), Expect = 5e-23 Identities = 58/80 (72%), Positives = 58/80 (72%) Frame = +1 Query: 130 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXX 309 TLSVPKKGSSMGA AVKDTAAFLGVSSKAKKASLAVRTQ Sbjct: 9 TLSVPKKGSSMGAAAVKDTAAFLGVSSKAKKASLAVRTQVATAPSSVTTSPGSATAKPSG 68 Query: 310 KKTLRQGVVVITGASSGLGL 369 KKTLRQGVVVITGASSGLGL Sbjct: 69 KKTLRQGVVVITGASSGLGL 88
>PORA_CUCSA (Q41249) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 40.8 bits (94), Expect = 8e-04 Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 12/91 (13%) Frame = +1 Query: 133 LSVPKKGSSMGAVAVKDTAAFLGVSS----KAKKASLAVRTQ--------XXXXXXXXXX 276 LS+PK+G S +V +KD++ F G+S K++ +S +R + Sbjct: 13 LSIPKEGKS--SVCLKDSSLF-GISFSDHLKSEFSSSTLRCKRELNQQIGAIRAQTTATE 69 Query: 277 XXXXXXXXXXXKKTLRQGVVVITGASSGLGL 369 KKTLR+G VVITGASSGLGL Sbjct: 70 SPAVNKATPDGKKTLRKGSVVITGASSGLGL 100
>POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 399 Score = 38.9 bits (89), Expect = 0.003 Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 12/92 (13%) Frame = +1 Query: 130 TLSVPKKGSSMGAVAVKDTAAFLGVSS-----KAKKASLAVRTQ-------XXXXXXXXX 273 + S+PK+G +GA ++KD+ F GVSS K S A+R + Sbjct: 12 SFSIPKEGK-IGA-SLKDSTLF-GVSSLSDSLKGDFTSSALRCKELRQKVGAVRAETAAP 68 Query: 274 XXXXXXXXXXXXKKTLRQGVVVITGASSGLGL 369 KKTLR+G VVITGASSGLGL Sbjct: 69 ATPAVNKSSSEGKKTLRKGNVVITGASSGLGL 100
>POR_DAUCA (Q9SDT1) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 36.6 bits (83), Expect = 0.015 Identities = 17/20 (85%), Positives = 19/20 (95%) Frame = +1 Query: 310 KKTLRQGVVVITGASSGLGL 369 KKTLR+G V+ITGASSGLGL Sbjct: 80 KKTLRKGSVIITGASSGLGL 99
>PORA_ARATH (Q42536) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 405 Score = 36.2 bits (82), Expect = 0.020 Identities = 17/20 (85%), Positives = 19/20 (95%) Frame = +1 Query: 310 KKTLRQGVVVITGASSGLGL 369 KKTLR+G VV+TGASSGLGL Sbjct: 87 KKTLRKGNVVVTGASSGLGL 106
>PORB_ARATH (P21218) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 401 Score = 36.2 bits (82), Expect = 0.020 Identities = 17/20 (85%), Positives = 19/20 (95%) Frame = +1 Query: 310 KKTLRQGVVVITGASSGLGL 369 KKTLR+G VV+TGASSGLGL Sbjct: 83 KKTLRKGNVVVTGASSGLGL 102
>PORB_HORVU (Q42850) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 395 Score = 35.0 bits (79), Expect = 0.045 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Frame = +1 Query: 166 AVAVKDTAAFLGVSSK-AKKASLAVRTQXXXXXXXXXXXXXXXXXXXXXKKTLRQGVVVI 342 A +K A LG+ +K +S+A+R Q KKT+R G +I Sbjct: 33 ADGLKLDATSLGLRTKRVNTSSVAIRAQAAAVSAPTATPASPAG-----KKTVRTGNAII 87 Query: 343 TGASSGLGL 369 TGASSGLGL Sbjct: 88 TGASSGLGL 96
>PORC_ARATH (O48741) Protochlorophyllide reductase C, chloroplast precursor (EC| 1.3.1.33) (PCR C) (NADPH-protochlorophyllide oxidoreductase C) (POR C) Length = 401 Score = 33.5 bits (75), Expect = 0.13 Identities = 16/20 (80%), Positives = 17/20 (85%) Frame = +1 Query: 310 KKTLRQGVVVITGASSGLGL 369 KKT R+G VITGASSGLGL Sbjct: 84 KKTERKGTAVITGASSGLGL 103
>RPOA_ANAMM (Q5PA81) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 366 Score = 32.0 bits (71), Expect = 0.38 Identities = 19/50 (38%), Positives = 26/50 (52%) Frame = -3 Query: 188 AVSFTATAPMLLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELEL 39 AVS L F+G+E VEG S + +D E L L++ +ELEL Sbjct: 243 AVSARVLQDQLQSFIGSEEVEGESRKKVDKEEGALPYDHNLLRKVDELEL 292
>ICAM5_MOUSE (Q60625) Intercellular adhesion molecule 5 precursor (ICAM-5)| (Telencephalin) Length = 917 Score = 30.8 bits (68), Expect = 0.84 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -3 Query: 329 PCRSVFLPLGDDAVEPGLVVTGEGAVATCVLTAS 228 P V+L LGD + P + + G+ VAT TAS Sbjct: 258 PEAGVYLSLGDQRLNPNVTLDGDSLVATATATAS 291
>YHIM_ECOLI (P37630) Inner membrane protein yhiM| Length = 364 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = -3 Query: 296 DAVEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPM 159 D G V+ G G +A CV T + + LL P+NAA S + P+ Sbjct: 117 DEFVAGHVIFGVGMIAACVSTVAASSGHFLLIPKNAAGSKSDGTPV 162
>APOH_PANTR (Q95LB0) Beta-2-glycoprotein 1 precursor (Beta-2-glycoprotein I)| (Apolipoprotein H) (Apo-H) (B2GPI) (Beta(2)GPI) Length = 345 Score = 30.4 bits (67), Expect = 1.1 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 12/76 (15%) Frame = -3 Query: 365 PSPDDAPVITTTPCRSVFLPLGDD---AVEPGLVVTGEGAVATCVLTASDAFFALLLTPR 195 P PDD P T P ++ + P G++ + +PG V G C LT L TPR Sbjct: 24 PKPDDLPFSTVVPLKTFYEP-GEEITYSCKPGYVSRGGMRKFICPLTGLWPINTLKCTPR 82 Query: 194 ---------NAAVSFT 174 N AV +T Sbjct: 83 VCPFAGILENGAVRYT 98
>APOH_MOUSE (Q01339) Beta-2-glycoprotein 1 precursor (Beta-2-glycoprotein I)| (Apolipoprotein H) (Apo-H) (B2GPI) (Beta(2)GPI) (Activated protein C-binding protein) (APC inhibitor) Length = 345 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = -3 Query: 365 PSPDDAPVITTTPCRSVFLPLGDDAV---EPGLVVTGEGAVATCVLTASDAFFALLLTPR 195 P PDD P T P ++ + P G+ V +PG V G TC LT L PR Sbjct: 24 PKPDDLPFATVVPLKTSYDP-GEQIVYSCKPGYVSRGGMRRFTCPLTGMWPINTLRCVPR 82
>APOH_HUMAN (P02749) Beta-2-glycoprotein 1 precursor (Beta-2-glycoprotein I)| (Apolipoprotein H) (Apo-H) (B2GPI) (Beta(2)GPI) (Activated protein C-binding protein) (APC inhibitor) (Anticardiolipin cofactor) Length = 345 Score = 30.4 bits (67), Expect = 1.1 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 12/76 (15%) Frame = -3 Query: 365 PSPDDAPVITTTPCRSVFLPLGDD---AVEPGLVVTGEGAVATCVLTASDAFFALLLTPR 195 P PDD P T P ++ + P G++ + +PG V G C LT L TPR Sbjct: 24 PKPDDLPFSTVVPLKTFYEP-GEEITYSCKPGYVSRGGMRKFICPLTGLWPINTLKCTPR 82 Query: 194 ---------NAAVSFT 174 N AV +T Sbjct: 83 VCPFAGILENGAVRYT 98
>CASK_CAMDR (P79139) Kappa-casein precursor| Length = 182 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -3 Query: 290 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 168 VEP ++ T E AV T V+ + + F TP V T+T Sbjct: 140 VEPPVIPTAEPAVNTVVIAEASSEFITTSTPETTTVQITST 180
>POR_MARPA (O80333) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 458 Score = 29.3 bits (64), Expect = 2.4 Identities = 24/73 (32%), Positives = 31/73 (42%) Frame = +1 Query: 151 GSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXXKKTLRQG 330 G MG VA K A L VS+ A ++++ KKT + Sbjct: 92 GLRMGEVA-KFGGALLSVSTVAAN----LKSKPGVLSVNAVTAPAETMNKPSSKKTATKS 146 Query: 331 VVVITGASSGLGL 369 +ITGASSGLGL Sbjct: 147 TCIITGASSGLGL 159
>ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor (ICAM-5)| (Telencephalin) Length = 924 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -3 Query: 317 VFLPLGDDAVEPGLVVTGEGAVATCVLTAS 228 V+L LGD + P + + G+ VAT TAS Sbjct: 262 VYLALGDQNLSPDVTLEGDAFVATATATAS 291
>CASK_LAMGU (Q28451) Kappa-casein (Fragment)| Length = 125 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -3 Query: 290 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 168 VEP ++ T E V T V+ + + F TP V T+T Sbjct: 83 VEPPVIPTAEPVVNTVVIAEASSEFITTSTPETTTVQITST 123
>FLR1_YEAST (P38124) Fluconazole resistance protein 1| Length = 548 Score = 28.5 bits (62), Expect = 4.2 Identities = 26/86 (30%), Positives = 39/86 (45%) Frame = -3 Query: 275 VVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPMLLPFLGTERVEGRSWRAMDDG 96 + TG G VA + S L+L +A AP+L P LG V+ ++WR + Sbjct: 212 LATGGGTVADII---SPEMVPLVLGMWSAGA---VAAPVLAPLLGAAMVDAKNWRFIFWL 265 Query: 95 ELGLSLASTALQEFNELELECTVLLY 18 + LS A+ L F E + +LY Sbjct: 266 LMWLSAATFILLAFFFPETQHHNILY 291
>APOH_CANFA (P33703) Beta-2-glycoprotein 1 precursor (Beta-2-glycoprotein I)| (Apolipoprotein H) (Apo-H) (B2GPI) (Beta(2)GPI) Length = 345 Score = 28.5 bits (62), Expect = 4.2 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Frame = -3 Query: 365 PSPDDAPVITTTPCRSVFLPLGDD---AVEPGLVVTGEGAVATCVLT 234 P PDD P T P ++ + P G+ +PG V G TC LT Sbjct: 24 PKPDDIPFATVVPLKTFYDP-GEQIAYTCQPGYVFRGLTRRFTCPLT 69
>ANP3_PSEAM (P02733) Ice-structuring protein 3 (ISP 3) (Antifreeze peptide 3)| Length = 37 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -3 Query: 269 TGEGAVATCVLTASDAFFALLLTPRNAAVSFTATA 165 T A A LTA++A A LT +AA + ATA Sbjct: 2 TASDAAAAAALTAABAAAAAKLTABBAAAAAAATA 36
>ALGE_PSEAE (P18895) Alginate production protein algE precursor| Length = 490 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Frame = -3 Query: 116 WRAMDDGELGLSLASTALQEFNE---LELECTVLLYFTSGL 3 WR DD ++G S + ALQ + EL+ V YF GL Sbjct: 402 WRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQGL 442
>CASK_TAYTA (Q28794) Kappa-casein (Fragment)| Length = 146 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -3 Query: 290 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 168 VEP L+ T E V T V+ + + F + TP AV ++T Sbjct: 104 VEPTLIPTTEPVVNTVVIPEAASEFLITNTPETTAVQVSST 144
>MUCDL_MOUSE (Q8VHF2) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 831 Score = 27.7 bits (60), Expect = 7.1 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Frame = -3 Query: 203 TPRNAAVSFTATAPMLLPFLGT-ERVEGRSWRAMDDGELGLSLASTALQEFNELELECTV 27 TP+ TAT P+ LP G E+ +G+ + +D LG L + L L L C V Sbjct: 605 TPKPGTSQSTATGPISLPSTGAGEQGDGQRFSTVDMAVLGGVLGALLL-----LALICLV 659 Query: 26 LL 21 +L Sbjct: 660 IL 661
>ANPB_PSEAM (Q99013) Ice-structuring protein B precursor (ISP B) (Antifreeze| protein B) (HPLC8) Length = 82 Score = 27.7 bits (60), Expect = 7.1 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = -3 Query: 269 TGEGAVATCVLTASDAFFALLLTPRNAAVSFTATA 165 T A A LTA++A A LT NAA + ATA Sbjct: 46 TASDAAAAAALTAANAAAAAKLTADNAAAAAAATA 80
>ADA12_HUMAN (O43184) ADAM 12 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 12) (Meltrin alpha) Length = 909 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -3 Query: 326 CRSVFLPLGDDAVEPGLVVTG 264 CR + LGDD +PGLV+ G Sbjct: 615 CRGTHVYLGDDMPDPGLVLAG 635
>XRP2_CHICK (Q5ZHN4) Protein XRP2| Length = 356 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = -3 Query: 326 CRSVFLPLGDDAVEPGLVVTGEGAVATCVLTASDAF 219 C S F+PL + L G+GAV C T +D F Sbjct: 290 CASEFIPLLERGPVVALEFNGDGAVEGCRNTVNDVF 325
>ADA12_MOUSE (Q61824) ADAM 12 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 12) (Meltrin alpha) Length = 903 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -3 Query: 326 CRSVFLPLGDDAVEPGLVVTG 264 CR + LGDD +PGLV+ G Sbjct: 613 CRGTHVYLGDDMPDPGLVLAG 633
>ANPA_PSEAM (P04002) Ice-structuring protein A precursor (ISP A) (Antifreeze| protein A) (HPLC6) Length = 82 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = -3 Query: 269 TGEGAVATCVLTASDAFFALLLTPRNAAVSFTATA 165 T A A LTA++A A LT NAA + ATA Sbjct: 46 TASDAAAAAALTAANAKAAAELTAANAAAAAAATA 80
>HAS1_CANAL (Q5AK59) ATP-dependent RNA helicase HAS1 (EC 3.6.1.-)| Length = 565 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Frame = -3 Query: 281 GLVVTGEGAVATCVLTASDAFFALLLTPRN--AAVSFTATAPMLLPFLGTER 132 G TG G ++ A + ++L + PRN A + T T + L G R Sbjct: 150 GAAKTGSGKTLAFLIPAIELLYSLKIKPRNGTAVIIITPTRELALQIFGVAR 201
>TRAM7_ECOLI (P33787) Protein traM| Length = 127 Score = 27.3 bits (59), Expect = 9.3 Identities = 24/57 (42%), Positives = 29/57 (50%) Frame = -3 Query: 197 RNAAVSFTATAPMLLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELELECTV 27 R VSF+ATA MLL LG E + M+ E + A EFN+L LEC V Sbjct: 29 REKDVSFSATASMLLE-LGLRVYEAQ----MERKESAFNQA-----EFNKLLLECVV 75
>TRAM6_ECOLI (P18808) Protein traM| Length = 127 Score = 27.3 bits (59), Expect = 9.3 Identities = 24/57 (42%), Positives = 29/57 (50%) Frame = -3 Query: 197 RNAAVSFTATAPMLLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELELECTV 27 R VSF+ATA MLL LG E + M+ E + A EFN+L LEC V Sbjct: 29 REKDVSFSATASMLLE-LGLRVYEAQ----MERKESAFNQA-----EFNKLLLECVV 75
>RBL_ARCFU (O28635) Ribulose bisphosphate carboxylase (EC 4.1.1.39) (RuBisCO)| Length = 441 Score = 27.3 bits (59), Expect = 9.3 Identities = 26/74 (35%), Positives = 32/74 (43%) Frame = -3 Query: 308 PLGDDAVEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPMLLPFLGTERV 129 P DD V + EG T DA A+ AA S T T L P+ ERV Sbjct: 17 PQKDDIVAVFRITPAEG------FTIEDAAGAV------AAESSTGTWTSLHPWYDEERV 64 Query: 128 EGRSWRAMDDGELG 87 +G S +A D +LG Sbjct: 65 KGLSAKAYDFVDLG 78
>POR_AVESA (P15904) Protochlorophyllide reductase (EC 1.3.1.33) (PCR)| (NADPH-protochlorophyllide oxidoreductase) (POR) (Fragment) Length = 313 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/13 (100%), Positives = 13/13 (100%) Frame = +1 Query: 331 VVVITGASSGLGL 369 VVVITGASSGLGL Sbjct: 1 VVVITGASSGLGL 13
>CASK_UNCUN (Q29150) Kappa-casein (Fragment)| Length = 146 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -3 Query: 287 EPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 168 EP L T E V T V T + + F + TP V T+T Sbjct: 105 EPTLTPTTEPIVNTVVTTEASSEFTITSTPETTTVPVTST 144 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.310 0.125 0.319 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,387,398 Number of Sequences: 219361 Number of extensions: 365508 Number of successful extensions: 1218 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 1209 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1217 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
