>BRL3_ARATH (Q9LJF3) Serine/threonine-protein kinase BRI1-like 3 precursor (EC|
           2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 3)
          Length = 1164

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +2

Query: 179 LQALKR-AITDDPKNLTGNW---CGPDVCAYYGVFCAPSLDDPCARAVAGVDLNHGDLAG 346
           L A K+ +I  DP N  GNW    G D C + GV C+          V G+DL +G L G
Sbjct: 37  LTAFKQTSIKSDPTNFLGNWRYGSGRDPCTWRGVSCSSD------GRVIGLDLRNGGLTG 90

Query: 347 TL 352
           TL
Sbjct: 91  TL 92

>BRL1_ARATH (Q9ZWC8) Serine/threonine-protein kinase BRI1-like 1 precursor (EC|
           2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 1)
          Length = 1166

 Score = 35.4 bits (80), Expect = 0.035
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +2

Query: 191 KRAITDDPKNLTGNW---CGPDVCAYYGVFCAPSLDDPCARAVAGVDLNHGDLAGTL 352
           + ++  DP N+ GNW    G   C++ GV C+   DD     + G+DL +  L GTL
Sbjct: 43  QNSVKSDPNNVLGNWKYESGRGSCSWRGVSCS---DD---GRIVGLDLRNSGLTGTL 93

>BRL2_ARATH (Q9ZPS9) Serine/threonine-protein kinase BRI1-like 2 precursor (EC|
           2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2)
           (Protein VASCULAR HIGHWAY 1)
          Length = 1143

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 125 LPEQTADNSPRLQPAYVALQALKRAITDDPKNLTGNWC-GPDVCAYYGVFC 274
           L + ++ +   L+   ++L + K  I DDP N+  NW      C + GV C
Sbjct: 25  LSQSSSSDQSSLKTDSLSLLSFKTMIQDDPNNILSNWSPRKSPCQFSGVTC 75

>GPMI_HALMA (Q5UXB9) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase (EC 5.4.2.1) (Phosphoglyceromutase)
           (BPG-independent PGAM) (iPGM)
          Length = 519

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = +2

Query: 137 TADNSPRLQPAYVALQALKRAITDDPKNLTGNWCGPDVCAYYGVFCAPSLDDPCARAVAG 316
           T D  P +    +A  A++   T+DP  +  N+  PD+  + G F      D    AV  
Sbjct: 372 TYDLQPEMSAPELADTAIEFIETEDPSAMVLNFANPDMVGHTGDF------DAAVTAVEA 425

Query: 317 VDLNHGDLAGTL 352
           VD   G L  T+
Sbjct: 426 VDEQLGRLVETI 437

>GPMI_HALSA (Q9HNY7) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase (EC 5.4.2.1) (Phosphoglyceromutase)
           (BPG-independent PGAM) (iPGM)
          Length = 508

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 16/87 (18%)
 Frame = +2

Query: 137 TADNSPRLQPAYVALQALKRAITDDPKNLTGNWCGPDVCAYYGVFCA------------- 277
           T D  P +    V    L     DDP  L  N+  PD+  + G F A             
Sbjct: 362 TYDEQPAMSAPAVTDTVLDALAGDDPDVLVLNYANPDMVGHTGDFDAAIEAVEAVDRELG 421

Query: 278 ---PSLDDPCARAVAGVDLNHGDLAGT 349
              P+L+D  A A    D  + D  GT
Sbjct: 422 RLVPALNDAGAHAFLTADHGNADDLGT 448



 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -2

Query: 277 CAEDPVVGA--HIGAAPVARQVLGVVGDGALERLQRHVRGL 161
           C  D + GA  H+        V+G+V DG +   Q+H+  L
Sbjct: 89  CGNDAISGALDHVADTGGTLHVMGLVSDGGVHADQQHIHAL 129

>GPDA_STRP8 (P68889) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 338

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -2

Query: 313 GHRASARVVEGRCAEDPVVGAHIGAAPVARQVLGVVGDGALERLQRHVRGLQPWAVVGR 137
           G  A A V+    AE   +G  +GA P+    L  VGD  +     H R  +  A +GR
Sbjct: 210 GDNAKAAVITRGLAEITRLGVKLGADPLTYSGLSGVGDLIVTGTSVHSRNWRAGAALGR 268

>GPDA_STRP6 (Q5XE03) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 338

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -2

Query: 313 GHRASARVVEGRCAEDPVVGAHIGAAPVARQVLGVVGDGALERLQRHVRGLQPWAVVGR 137
           G  A A V+    AE   +G  +GA P+    L  VGD  +     H R  +  A +GR
Sbjct: 210 GDNAKAAVITRGLAEITRLGVKLGADPLTYSGLSGVGDLIVTGTSVHSRNWRAGAALGR 268

>GPDA_STRP3 (P68888) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 338

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -2

Query: 313 GHRASARVVEGRCAEDPVVGAHIGAAPVARQVLGVVGDGALERLQRHVRGLQPWAVVGR 137
           G  A A V+    AE   +G  +GA P+    L  VGD  +     H R  +  A +GR
Sbjct: 210 GDNAKAAVITRGLAEITRLGVKLGADPLTYSGLSGVGDLIVTGTSVHSRNWRAGAALGR 268

>GPDA_STRP1 (P68887) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 338

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -2

Query: 313 GHRASARVVEGRCAEDPVVGAHIGAAPVARQVLGVVGDGALERLQRHVRGLQPWAVVGR 137
           G  A A V+    AE   +G  +GA P+    L  VGD  +     H R  +  A +GR
Sbjct: 210 GDNAKAAVITRGLAEITRLGVKLGADPLTYSGLSGVGDLIVTGTSVHSRNWRAGAALGR 268

>UL49_VZVD (P09272) Tegument protein (Gene 9 protein)|
          Length = 302

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +2

Query: 143 DNSPRLQPAYVALQALKRAITDD--PKNLTGNWCGPDVCAYYGVFC 274
           ++SP+  P      A  R I+    PK  T +WCGP       VFC
Sbjct: 137 EDSPKRAPPGAGAIASGRPISFSTAPKTATSSWCGPTPSYNKRVFC 182

>GP46_LEIAM (P21978) Surface membrane glycoprotein GP46/M-2 precursor|
          Length = 476

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = +2

Query: 179 LQALKRAITDDPKNLTGNWCGPDVCAYYGVFCAPSLDDPCARAVAGVDLNHGDLAGTLP 355
           LQA  RAI      L   W G D C++  + C  S          GV +++ D  GTLP
Sbjct: 50  LQAFARAIPA----LGDTWTGSDFCSWEHIICYSS--------GVGVWMHNVDYTGTLP 96

>RLUD_ZYMMO (P50513) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 317

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = -2

Query: 346 AGQVAVVEVDAGHRASARVVEGRCAEDPVVGAHIGAAPVARQVLGVVGDGALERLQRHVR 167
           A Q A   ++  +RA   +V+G  +    V A +  + V RQ + +V DG  +R   H R
Sbjct: 161 AAQFADHSINRRYRA---IVDGHPSLQGHVDAPLARSSVNRQKMAIVSDGRGKRAVTHYR 217

Query: 166 GLQP 155
            + P
Sbjct: 218 MITP 221

>GATA_MYCLE (O33105) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 497

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +2

Query: 248 VCAYYGVFCAPSLDD--PCARAVAGVDLNHGDLAG 346
           V  Y  V CA SLD   PCAR V    L H  +AG
Sbjct: 204 VSRYGLVACASSLDQGGPCARTVLDTALLHAVIAG 238

>NUOG_SHIFL (Q7UC56) NADH-quinone oxidoreductase chain 3 (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain G) (NDH-1, chain G)
          Length = 907

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = -2

Query: 346 AGQVAVVEVDAGHRASARVVEGRCAEDPVVGAHIGAAPVARQV----LGVVGDGALE 188
           AG + V++  A     A+ ++GR       GA +G   +AR V    LG++G G+LE
Sbjct: 503 AGSIEVIQAAAN---VAKALKGR-------GADVGITMIARSVNSMGLGIMGGGSLE 549

>SNX1_RAT (Q99N27) Sorting nexin-1|
          Length = 522

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 119 VPLPEQTADNSPRLQPAYVALQ 184
           +P P Q A NSP+ QP+Y  L+
Sbjct: 114 IPHPTQEATNSPKPQPSYEELE 135

>SF01_HUMAN (Q15637) Splicing factor 1 (Zinc finger protein 162) (Transcription|
           factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian
           branch point-binding protein mBBP) (BBP)
          Length = 639

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 342 ARSPWLRSTPATARAHGSSRDGAQKTP**AHTSGPHQLP 226
           +R PW+ S P+ +R +     G    P     S PH LP
Sbjct: 364 SRPPWMNSGPSESRPYHGMHGGGPGGPGGGPHSFPHPLP 402

>GATA_MYCTU (O53258) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 494

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 248 VCAYYGVFCAPSLDD--PCARAVAGVDLNHGDLAGTLP 355
           V  Y  V CA SLD   PCAR V    L H  +AG  P
Sbjct: 200 VSRYGLVACASSLDQGGPCARTVLDTALLHQVIAGHDP 237

>GATA_MYCBO (Q7TXG2) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 494

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 248 VCAYYGVFCAPSLDD--PCARAVAGVDLNHGDLAGTLP 355
           V  Y  V CA SLD   PCAR V    L H  +AG  P
Sbjct: 200 VSRYGLVACASSLDQGGPCARTVLDTALLHQVIAGHDP 237

>SRP54_MYCLE (O33013) Signal recognition particle protein (Fifty-four homolog)|
          Length = 521

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
 Frame = -2

Query: 331 VVEVDAGHRASARVVEGRCAEDP------------VVGAHIGAAPVA---RQVLGVVGDG 197
           V + +    A+A++V G    +             ++G  +G  P A   ++VL  V D 
Sbjct: 316 VFDAEQAEAAAAKIVAGELTLEDFLEQMLAVRKMGLIGNLLGMLPGAGQVKEVLEQVDDK 375

Query: 196 ALERLQRHVRGLQP 155
            L+RLQ  +RG+ P
Sbjct: 376 QLDRLQAIIRGMTP 389


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.309    0.127    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,507,629
Number of Sequences: 219361
Number of extensions: 608299
Number of successful extensions: 1545
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)