>SSB_RHOBA (P59932) Single-stranded DNA-binding protein (SSB)|
           (Helix-destabilizing protein)
          Length = 169

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -1

Query: 117 LVGRNRESGVGGK*GRGRPYVSAPEDGGGRGIWDRRKHV 1
           ++G   ESG GG  G GRP  S P  GG      R  +V
Sbjct: 105 MIGGRGESGGGGGGGGGRPAASRPNSGGAPAESQRSNYV 143

>DFFA_HUMAN (O00273) DNA fragmentation factor alpha subunit (DNA fragmentation|
           factor 45 kDa subunit) (DFF-45) (Inhibitor of CAD)
           (ICAD)
          Length = 331

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 242 AEAGFGDRTDIDDDGRERRTGTLVTASAHIITAV 343
           ++A FG+  D  D G  R T + V  ++HI+TA+
Sbjct: 212 SKAAFGEEVDAVDTGISRETSSDVALASHILTAL 245

>IF2_PROMA (Q7VA20) Translation initiation factor IF-2|
          Length = 1134

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 7   LPTVPDPSSSSVLRRAYIRASSPSLATNTTLSVSP 111
           +PT P P S++  R   I+  +PS++ N +L V P
Sbjct: 115 IPTSPKPPSAAKQRVDAIKKPTPSISKNNSLKVQP 149

>DLGP1_HUMAN (O14490) Disks large-associated protein 1 (DAP-1) (Guanylate|
           kinase-associated protein) (hGKAP)
           (SAP90/PSD-95-associated protein 1) (SAPAP1)
           (PSD-95/SAP90-binding protein 1)
          Length = 977

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 13  TVPDPSSSSVLRR-AYIRASSPSLATNTTLSVS 108
           T P PS     RR +Y++A+ PSL   TTL +S
Sbjct: 361 TSPKPSPKVAARRESYLKATQPSLTELTTLKIS 393

>SHK1_SCHPO (P50527) Serine/threonine-protein kinase pak1/shk1 (EC 2.7.11.1)|
          Length = 658

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = +1

Query: 19  PDPSSSSVLRRAYIRASSPSLATNTTLSVSPHQHQRCAGDTP 144
           P P  SS      IR+ SP L T  TLS S  +H R    TP
Sbjct: 286 PSPLVSSKSTDNIIRSHSPVLLTPQTLSTSETKHIRPNNSTP 327

>DLGP1_RAT (P97836) Disks large-associated protein 1 (DAP-1) (Guanylate|
           kinase-associated protein) (rGKAP)
           (SAP90/PSD-95-associated protein 1) (SAPAP1)
           (PSD-95/SAP90-binding protein 1)
          Length = 992

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 13  TVPDPSSSSVLRR-AYIRASSPSLATNTTLSVS 108
           T P PS     RR +Y++A+ PSL   TTL +S
Sbjct: 367 TSPKPSPKVAARRESYLKATQPSLTELTTLKIS 399

>DLGP1_MOUSE (Q9D415) Disks large-associated protein 1 (DAP-1) (Guanylate|
           kinase-associated protein) (SAP90/PSD-95-associated
           protein 1) (SAPAP1) (PSD-95/SAP90-binding protein 1)
          Length = 992

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 13  TVPDPSSSSVLRR-AYIRASSPSLATNTTLSVS 108
           T P PS     RR +Y++A+ PSL   TTL +S
Sbjct: 367 TSPKPSPKVAARRESYLKATQPSLTELTTLKIS 399

>TEGU_EBV (P03186) Large tegument protein|
          Length = 3149

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 221  NPAAFSIAEAGFGDRTDIDDDGRERRTGTLVT-ASAHIITAVIGS 352
            NP AFS+  AG         D +ERR  TL + ASA +  A   S
Sbjct: 2061 NPEAFSLTPAGRPQAIGPPQDDQERRRRTLASVASARLSAAAADS 2105

>SMD3_DROME (O44437) Small nuclear ribonucleoprotein SM D3 (snRNP core protein|
           D3) (SM-D3)
          Length = 151

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = -1

Query: 111 GRNRESGVGGK*GRGRPYVSAPEDGGGRGIW 19
           GR R    GG  G G P   AP   GGRG W
Sbjct: 109 GRGRGGPPGGGRGTGGP-PGAPGGSGGRGAW 138


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,647,724
Number of Sequences: 219361
Number of extensions: 871124
Number of successful extensions: 2892
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2889
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)