ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet97g07 |
|---|---|
| Clone Library Name | barley_pub |
>DEOD_MYCGE (P47295) Purine nucleoside phosphorylase deoD-type (EC 2.4.2.1)| (PNP) Length = 238 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/55 (27%), Positives = 27/55 (49%) Frame = -3 Query: 391 VGIGEHRPKPSXMTDVTVRLLACPCGAPQLKPR*LVVAQMSWPVQVLVTFLGSEV 227 +GI + + +R+ +C APQLK + LV+A +W + +G E+ Sbjct: 69 IGIYSYELMNFYEVETIIRIGSCGALAPQLKLKDLVIASKAWSESIYAKDMGVEI 123
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 30.0 bits (66), Expect = 2.5 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = +2 Query: 179 AALPCILRHPAIQEHHHLRPQKRNQHLDRPRH 274 AALP HP HHH P + + H P H Sbjct: 999 AALPPAHHHPPHHHHHHAPPPQPHHHHAHPPH 1030
>PGLR2_JUNAS (Q9FY19) Polygalacturonase precursor (PG) (EC 3.2.1.15) (Pectinase)| (Major pollen allergen Jun a 2) Length = 507 Score = 30.0 bits (66), Expect = 2.5 Identities = 10/39 (25%), Positives = 22/39 (56%) Frame = +3 Query: 99 GPAEPHLSYKIHQHSSSYPQPRDFPSEQLYHAYFAIQRF 215 GP +PH S+K+ ++YP P + + +++ + + F Sbjct: 111 GPCQPHFSFKVDGTIAAYPDPAKWKNSKIWMHFARLTDF 149
>3MGH_STAAW (P65416) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 30.0 bits (66), Expect = 2.5 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = +3 Query: 240 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSVIXDG 365 ++ T T+TG+ I T +YLG N A HG +T VTS+ G Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSLYKRG 65
>3MGH_STAAS (Q6G6X6) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 30.0 bits (66), Expect = 2.5 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = +3 Query: 240 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSVIXDG 365 ++ T T+TG+ I T +YLG N A HG +T VTS+ G Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSLYKRG 65
>3MGH_STAAR (Q6GE90) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 30.0 bits (66), Expect = 2.5 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = +3 Query: 240 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSVIXDG 365 ++ T T+TG+ I T +YLG N A HG +T VTS+ G Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSLYKRG 65
>3MGH_STAAN (P65415) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 30.0 bits (66), Expect = 2.5 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = +3 Query: 240 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSVIXDG 365 ++ T T+TG+ I T +YLG N A HG +T VTS+ G Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSLYKRG 65
>3MGH_STAAM (P65414) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 30.0 bits (66), Expect = 2.5 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = +3 Query: 240 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSVIXDG 365 ++ T T+TG+ I T +YLG N A HG +T VTS+ G Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSLYKRG 65
>3MGH_STAAC (Q5HDL2) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 30.0 bits (66), Expect = 2.5 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = +3 Query: 240 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSVIXDG 365 ++ T T+TG+ I T +YLG N A HG +T VTS+ G Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSLYKRG 65
>YRPE_BACSU (O05410) Hypothetical protein yrpE| Length = 251 Score = 29.3 bits (64), Expect = 4.3 Identities = 11/35 (31%), Positives = 19/35 (54%) Frame = +3 Query: 132 HQHSSSYPQPRDFPSEQLYHAYFAIQRFKNTITSD 236 H+HS + D +E++Y YF + K+ + SD Sbjct: 59 HEHSHDHSHAHDEETEKIYEGYFKNSQVKDRLLSD 93
>FMN2_MOUSE (Q9JL04) Formin-2| Length = 1567 Score = 29.3 bits (64), Expect = 4.3 Identities = 18/58 (31%), Positives = 25/58 (43%) Frame = +3 Query: 231 SDPKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLTVTSVIXDGFGLCSPMPTDLVD 404 S P T + T H+ ++S+ G NC P T +S G G+ P P L D Sbjct: 812 SQPSLHTESETSHEHSVSSSF-GNNCNVPPAPPLPCTESSSFMPGLGMAIPPPPCLSD 868
>RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC 2.7.11.1)| Length = 999 Score = 28.9 bits (63), Expect = 5.7 Identities = 21/63 (33%), Positives = 30/63 (47%) Frame = +3 Query: 231 SDPKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLTVTSVIXDGFGLCSPMPTDLVDEL 410 SDP S+W+ ++ +LG +C A SN V SV F L P P+ ++ L Sbjct: 36 SDPAQSLSSWSDNNDVTPCKWLGVSCDA----TSN--VVSVDLSSFMLVGPFPS-ILCHL 88 Query: 411 PDL 419 P L Sbjct: 89 PSL 91
>CTXA_CHIQU (P58762) Toxin A precursor (CqTX-A)| Length = 462 Score = 28.5 bits (62), Expect = 7.4 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Frame = +3 Query: 150 YPQPRDFPSEQLYHAYFAIQ-----RFKNTITSDPKNVTSTWTGHDICATTSYLGFNCGA 314 YP+ R+ S++++ + ++ R K +T + W + +C++ YL C Sbjct: 293 YPRERNEQSQKIFKFFDLMKVKYDDRLKQDLTGIQVFSSLHWPNYFLCSSKDYLALICTK 352 Query: 315 PHG 323 P+G Sbjct: 353 PYG 355
>VTS1_EMENI (Q5BGC4) Protein vts1| Length = 611 Score = 28.5 bits (62), Expect = 7.4 Identities = 12/38 (31%), Positives = 18/38 (47%) Frame = +3 Query: 237 PKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLTVTS 350 P NV ++W T+ G GAPH Q S++ + Sbjct: 332 PYNVNASWASMTNTPMTATFGSQLGAPHQQGSDMVANA 369
>K502_ACTCH (P43394) Fruit protein PKIWI502| Length = 317 Score = 28.5 bits (62), Expect = 7.4 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +2 Query: 95 SRPR*ATPVL*DTPAFFLVPTAT*LPKRAALPCILRHPAIQEHHHLR 235 SRP + P L P+ L + + P LRHP ++ HHH R Sbjct: 6 SRPSLSRPSLSRHPSLTLHSSLSHAPPHHRPVAFLRHPTLRYHHHGR 52
>RDRP_ORSVS (Q84133) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1612 Score = 28.1 bits (61), Expect = 9.7 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = -2 Query: 344 HREVTRLSMRCPA 306 HREV RLS+RCPA Sbjct: 949 HREVRRLSLRCPA 961
>RDRP_ORSVC (P89659) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1612 Score = 28.1 bits (61), Expect = 9.7 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = -2 Query: 344 HREVTRLSMRCPA 306 HREV RLS+RCPA Sbjct: 949 HREVRRLSLRCPA 961 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,243,238 Number of Sequences: 219361 Number of extensions: 1185248 Number of successful extensions: 3360 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3238 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3353 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
