ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet97g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 p... 44 9e-05
2FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 pre... 41 0.001
3FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan protein 1 pre... 38 0.006
4MBB1_CHLRE (Q9FNS4) PsbB mRNA maturation factor Mbb1, chloroplas... 29 3.8

>FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 precursor|
          Length = 422

 Score = 44.3 bits (103), Expect = 9e-05
 Identities = 19/31 (61%), Positives = 25/31 (80%)
 Frame = +2

Query: 131 GYNITKILGEYPEYSQFNKLLTQTRLAQDIN 223
           G+NIT+IL + PEYS FN  L+QT+LA +IN
Sbjct: 25  GHNITQILSDTPEYSSFNNYLSQTKLADEIN 55



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>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor|
           (AtAGP8)
          Length = 420

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 17/30 (56%), Positives = 24/30 (80%)
 Frame = +2

Query: 134 YNITKILGEYPEYSQFNKLLTQTRLAQDIN 223
           +NIT+IL + P+YS FN  L+QT+LA +IN
Sbjct: 26  HNITQILADSPDYSSFNSYLSQTKLADEIN 55



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>FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan protein 1 precursor|
          Length = 424

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 14/31 (45%), Positives = 23/31 (74%)
 Frame = +2

Query: 134 YNITKILGEYPEYSQFNKLLTQTRLAQDINK 226
           +N+T++L  +P +S F+  LTQT LA +IN+
Sbjct: 25  HNVTRLLANHPSFSSFSHFLTQTHLADEINR 55



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>MBB1_CHLRE (Q9FNS4) PsbB mRNA maturation factor Mbb1, chloroplast precursor|
          Length = 662

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 174 EYSGYSPRILVMLYPSAARRRASIV--LLVLGASAPGARDGAGRTG 43
           + + Y P  ++ L PSA  RR++ V   ++   S+ G+ DG G  G
Sbjct: 47  QVAAYEPTAVLQLAPSAVSRRSTPVRSSIIADLSSSGSGDGEGERG 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,510,947
Number of Sequences: 219361
Number of extensions: 178611
Number of successful extensions: 816
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 80,573,946
effective HSP length: 51
effective length of database: 69,386,535
effective search space used: 1665276840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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