| Clone Name | baet97f08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 113 bits (57), Expect = 5e-22 Identities = 90/101 (89%) Strand = Plus / Plus Query: 211 gtcatgtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggcacactg 270 ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| || Sbjct: 21289217 gtcatgtacacagctgatgggaggcggtttgaggtcccattggcgtaccttggcacagtg 21289276 Query: 271 atcttcagagagctcctccatatgtctcaggaggagtttgg 311 ||||||| || ||||| ||||| |||||||||||||| Sbjct: 21289277 gtcttcagtgaactcctgaggatgtcccaggaggagtttgg 21289317 Score = 85.7 bits (43), Expect = 1e-13 Identities = 52/55 (94%) Strand = Plus / Plus Query: 211 gtcatgtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggca 265 ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| Sbjct: 21293074 gtcatgtacacagctgacgggaggcggttcgaggtcccattggtgtaccttggca 21293128 Score = 83.8 bits (42), Expect = 4e-13 Identities = 102/122 (83%) Strand = Plus / Plus Query: 193 gcaggcaaaggctgctgtgtcatgtacacagctgacgggaggcggtttgaggtgccattg 252 |||||||| ||| |||||||||||||||||| |||||||| || || ||||| || ||| Sbjct: 21284929 gcaggcaagggccactgtgtcatgtacacagcggacgggagccgattcgaggtcccgttg 21284988 Query: 253 gcgtaccttggcacactgatcttcagagagctcctccatatgtctcaggaggagtttggt 312 |||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||| Sbjct: 21284989 gcgtacctcggcactgcagtcttcagtgagctcctcaggatgtcacaggaggagtttggt 21285048 Query: 313 tt 314 || Sbjct: 21285049 tt 21285050 Score = 79.8 bits (40), Expect = 7e-12 Identities = 103/124 (83%) Strand = Plus / Minus Query: 191 tggcaggcaaaggctgctgtgtcatgtacacagctgacgggaggcggtttgaggtgccat 250 |||||||||| ||| ||| | ||||||||| || |||||||| || || ||||| || | Sbjct: 21300046 tggcaggcaagggccactgcgccatgtacacggcggacgggagccgattcgaggtcccgt 21299987 Query: 251 tggcgtaccttggcacactgatcttcagagagctcctccatatgtctcaggaggagtttg 310 |||||||||| ||||| | ||||||| |||||||||| ||||| ||||||||||||| Sbjct: 21299986 tggcgtacctcggcacggcggtcttcagtgagctcctccggatgtcacaggaggagtttg 21299927 Query: 311 gttt 314 |||| Sbjct: 21299926 gttt 21299923 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Minus Query: 212 tcatgtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggcacactga 271 |||||||||| ||||| ||| ||||||||||||| || ||||||| ||| | ||| || Sbjct: 21301929 tcatgtacactgctgatgggcggcggtttgaggtcccgttggcgttcctcgccacgacga 21301870 Query: 272 tcttcagagagctcctccatatgtctcaggaggagtttgg 311 ||||| |||||||||| |||||||||||||||||||| Sbjct: 21301869 tcttcgcagagctcctcaggatgtctcaggaggagtttgg 21301830 Score = 71.9 bits (36), Expect = 2e-09 Identities = 87/104 (83%) Strand = Plus / Plus Query: 211 gtcatgtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggcacactg 270 ||||||||||||||||| ||||||||||| ||||| || ||| ||||||||||||| | Sbjct: 21291134 gtcatgtacacagctgatgggaggcggttcgaggtcccgttgacgtaccttggcaccgcg 21291193 Query: 271 atcttcagagagctcctccatatgtctcaggaggagtttggttt 314 ||||||| || ||||| ||||| ||||||||||| ||||| Sbjct: 21291194 gtcttcagtgaactcctgaggatgtcccaggaggagttcggttt 21291237 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 72 catggtcagtgccaagagaatcgctcaactagcaaagaagtggcaaagggtagcatccct 131 |||| ||||||||||||| |||||||| | ||||||||||||||||| ||||| |||| Sbjct: 21302069 catgatcagtgccaagaggctcgctcaaatggcaaagaagtggcaaagaatagcagccct 21302010 Query: 132 caggaggaag 141 | |||||||| Sbjct: 21302009 cgggaggaag 21302000 Score = 63.9 bits (32), Expect = 4e-07 Identities = 104/128 (81%) Strand = Plus / Plus Query: 215 tgtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggcacactgatct 274 ||||||| || |||||| ||||||||||||||||||| ||||||||||||| ||| Sbjct: 21278667 tgtacactgccgacggggcgcggtttgaggtgccattgccgtaccttggcacggcagtct 21278726 Query: 275 tcagagagctcctccatatgtctcaggaggagtttggttttgtaagcggtgatggcagaa 334 | | |||||||| |||||||| ||||||||||| |||| ||||| ||||| || | Sbjct: 21278727 ttggcgagctcctgacgatgtctcatgaggagtttggctttgcaagcgaagatgggagga 21278786 Query: 335 tcacgttg 342 |||||||| Sbjct: 21278787 tcacgttg 21278794 Score = 56.0 bits (28), Expect = 9e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 83 ccaagagaatcgctcaactagcaaagaagtgg 114 |||||||||| ||||||||||||||||||||| Sbjct: 21294821 ccaagagaattgctcaactagcaaagaagtgg 21294852 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 213 catgtacacagctgacgggaggcggtttgaggtgccattggcgtacct 260 ||||||||| || |||||||||||||| ||||||||||| ||||||| Sbjct: 21268367 catgtacacggcagacgggaggcggttcaaggtgccattgccgtacct 21268320 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 234 gcggtttgaggtgccattggcgtaccttggcac 266 |||||| |||||||||||||||||||| ||||| Sbjct: 21308152 gcggttcgaggtgccattggcgtacctcggcac 21308184 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Plus Query: 346 tgtgatgccacggtgatgcaatacattatgttcttgcttggaagaaatgcttcggtggag 405 |||||||||| ||||||| | ||| | |||| ||| ||| ||||||||||||| || || Sbjct: 21295081 tgtgatgccatggtgatggagtacgtgatgtgcttacttagaagaaatgcttcagtagat 21295140 Query: 406 attgagaaggcat 418 |||||||||||| Sbjct: 21295141 gttgagaaggcat 21295153 Score = 50.1 bits (25), Expect = 0.006 Identities = 79/97 (81%) Strand = Plus / Plus Query: 212 tcatgtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggcacactga 271 |||||||||| || || ||||||||||| ||||| || ||||||| ||| | ||| || Sbjct: 21282834 tcatgtacaccgccgatgggaggcggttcgaggtcccgttggcgttcctcgccacgacga 21282893 Query: 272 tcttcagagagctcctccatatgtctcaggaggagtt 308 ||||| |||||||||| || |||||||||||||| Sbjct: 21282894 tcttcgcagagctcctcaggatctctcaggaggagtt 21282930 Score = 48.1 bits (24), Expect = 0.023 Identities = 42/48 (87%) Strand = Plus / Plus Query: 72 catggtcagtgccaagagaatcgctcaactagcaaagaagtggcaaag 119 |||| |||||||||||||| |||||||| | | |||||||||||||| Sbjct: 21282694 catgatcagtgccaagagactcgctcaaatggtgaagaagtggcaaag 21282741 Score = 44.1 bits (22), Expect = 0.36 Identities = 52/62 (83%) Strand = Plus / Minus Query: 292 atgtctcaggaggagtttggttttgtaagcggtgatggcagaatcacgttgccctgtgat 351 |||||||||||||||||||| || | | | | |||||||| ||||||||||| || ||| Sbjct: 21305411 atgtctcaggaggagtttggcttcgcaggtgacgatggcaggatcacgttgccgtgcgat 21305352 Query: 352 gc 353 || Sbjct: 21305351 gc 21305350 Score = 44.1 bits (22), Expect = 0.36 Identities = 46/54 (85%) Strand = Plus / Plus Query: 72 catggtcagtgccaagagaatcgctcaactagcaaagaagtggcaaagggtagc 125 |||| |||| ||||||||| | | |||| | |||||||||||||||||| |||| Sbjct: 21290998 catgatcagcgccaagagattggttcaattggcaaagaagtggcaaaggatagc 21291051 Score = 44.1 bits (22), Expect = 0.36 Identities = 46/54 (85%) Strand = Plus / Plus Query: 234 gcggtttgaggtgccattggcgtaccttggcacactgatcttcagagagctcct 287 |||||| |||||||||||| ||||||| ||||| | | ||||| | |||||||| Sbjct: 21276320 gcggttcgaggtgccattgccgtacctaggcacgccgctcttcggcgagctcct 21276373 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Plus Query: 72 catggtcagtgccaagagaatcgctcaactagcaaagaagtggcaaagg 120 |||| |||| |||||||| || ||||| ||||||||||| |||| |||| Sbjct: 21307978 catgatcagcgccaagaggattgctcagctagcaaagaaatggcgaagg 21308026 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 72 catggtcagtgccaagagaatcgctcaactagcaaagaagtggca 116 |||| ||||||||| |||| | |||||||| || ||||||||||| Sbjct: 21284811 catgatcagtgccaggagacttgctcaactggccaagaagtggca 21284855
>dbj|AP005862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0038K02 Length = 118635 Score = 113 bits (57), Expect = 5e-22 Identities = 90/101 (89%) Strand = Plus / Plus Query: 211 gtcatgtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggcacactg 270 ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| || Sbjct: 21596 gtcatgtacacagctgatgggaggcggtttgaggtcccattggcgtaccttggcacagtg 21655 Query: 271 atcttcagagagctcctccatatgtctcaggaggagtttgg 311 ||||||| || ||||| ||||| |||||||||||||| Sbjct: 21656 gtcttcagtgaactcctgaggatgtcccaggaggagtttgg 21696 Score = 85.7 bits (43), Expect = 1e-13 Identities = 52/55 (94%) Strand = Plus / Plus Query: 211 gtcatgtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggca 265 ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| Sbjct: 25453 gtcatgtacacagctgacgggaggcggttcgaggtcccattggtgtaccttggca 25507 Score = 83.8 bits (42), Expect = 4e-13 Identities = 102/122 (83%) Strand = Plus / Plus Query: 193 gcaggcaaaggctgctgtgtcatgtacacagctgacgggaggcggtttgaggtgccattg 252 |||||||| ||| |||||||||||||||||| |||||||| || || ||||| || ||| Sbjct: 17308 gcaggcaagggccactgtgtcatgtacacagcggacgggagccgattcgaggtcccgttg 17367 Query: 253 gcgtaccttggcacactgatcttcagagagctcctccatatgtctcaggaggagtttggt 312 |||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||| Sbjct: 17368 gcgtacctcggcactgcagtcttcagtgagctcctcaggatgtcacaggaggagtttggt 17427 Query: 313 tt 314 || Sbjct: 17428 tt 17429 Score = 79.8 bits (40), Expect = 7e-12 Identities = 103/124 (83%) Strand = Plus / Minus Query: 191 tggcaggcaaaggctgctgtgtcatgtacacagctgacgggaggcggtttgaggtgccat 250 |||||||||| ||| ||| | ||||||||| || |||||||| || || ||||| || | Sbjct: 32425 tggcaggcaagggccactgcgccatgtacacggcggacgggagccgattcgaggtcccgt 32366 Query: 251 tggcgtaccttggcacactgatcttcagagagctcctccatatgtctcaggaggagtttg 310 |||||||||| ||||| | ||||||| |||||||||| ||||| ||||||||||||| Sbjct: 32365 tggcgtacctcggcacggcggtcttcagtgagctcctccggatgtcacaggaggagtttg 32306 Query: 311 gttt 314 |||| Sbjct: 32305 gttt 32302 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Minus Query: 212 tcatgtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggcacactga 271 |||||||||| ||||| ||| ||||||||||||| || ||||||| ||| | ||| || Sbjct: 34308 tcatgtacactgctgatgggcggcggtttgaggtcccgttggcgttcctcgccacgacga 34249 Query: 272 tcttcagagagctcctccatatgtctcaggaggagtttgg 311 ||||| |||||||||| |||||||||||||||||||| Sbjct: 34248 tcttcgcagagctcctcaggatgtctcaggaggagtttgg 34209 Score = 71.9 bits (36), Expect = 2e-09 Identities = 87/104 (83%) Strand = Plus / Plus Query: 211 gtcatgtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggcacactg 270 ||||||||||||||||| ||||||||||| ||||| || ||| ||||||||||||| | Sbjct: 23513 gtcatgtacacagctgatgggaggcggttcgaggtcccgttgacgtaccttggcaccgcg 23572 Query: 271 atcttcagagagctcctccatatgtctcaggaggagtttggttt 314 ||||||| || ||||| ||||| ||||||||||| ||||| Sbjct: 23573 gtcttcagtgaactcctgaggatgtcccaggaggagttcggttt 23616 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 72 catggtcagtgccaagagaatcgctcaactagcaaagaagtggcaaagggtagcatccct 131 |||| ||||||||||||| |||||||| | ||||||||||||||||| ||||| |||| Sbjct: 34448 catgatcagtgccaagaggctcgctcaaatggcaaagaagtggcaaagaatagcagccct 34389 Query: 132 caggaggaag 141 | |||||||| Sbjct: 34388 cgggaggaag 34379 Score = 63.9 bits (32), Expect = 4e-07 Identities = 104/128 (81%) Strand = Plus / Plus Query: 215 tgtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggcacactgatct 274 ||||||| || |||||| ||||||||||||||||||| ||||||||||||| ||| Sbjct: 11046 tgtacactgccgacggggcgcggtttgaggtgccattgccgtaccttggcacggcagtct 11105 Query: 275 tcagagagctcctccatatgtctcaggaggagtttggttttgtaagcggtgatggcagaa 334 | | |||||||| |||||||| ||||||||||| |||| ||||| ||||| || | Sbjct: 11106 ttggcgagctcctgacgatgtctcatgaggagtttggctttgcaagcgaagatgggagga 11165 Query: 335 tcacgttg 342 |||||||| Sbjct: 11166 tcacgttg 11173 Score = 56.0 bits (28), Expect = 9e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 83 ccaagagaatcgctcaactagcaaagaagtgg 114 |||||||||| ||||||||||||||||||||| Sbjct: 27200 ccaagagaattgctcaactagcaaagaagtgg 27231 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 213 catgtacacagctgacgggaggcggtttgaggtgccattggcgtacct 260 ||||||||| || |||||||||||||| ||||||||||| ||||||| Sbjct: 746 catgtacacggcagacgggaggcggttcaaggtgccattgccgtacct 699 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 234 gcggtttgaggtgccattggcgtaccttggcac 266 |||||| |||||||||||||||||||| ||||| Sbjct: 40531 gcggttcgaggtgccattggcgtacctcggcac 40563 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Plus Query: 346 tgtgatgccacggtgatgcaatacattatgttcttgcttggaagaaatgcttcggtggag 405 |||||||||| ||||||| | ||| | |||| ||| ||| ||||||||||||| || || Sbjct: 27460 tgtgatgccatggtgatggagtacgtgatgtgcttacttagaagaaatgcttcagtagat 27519 Query: 406 attgagaaggcat 418 |||||||||||| Sbjct: 27520 gttgagaaggcat 27532 Score = 50.1 bits (25), Expect = 0.006 Identities = 79/97 (81%) Strand = Plus / Plus Query: 212 tcatgtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggcacactga 271 |||||||||| || || ||||||||||| ||||| || ||||||| ||| | ||| || Sbjct: 15213 tcatgtacaccgccgatgggaggcggttcgaggtcccgttggcgttcctcgccacgacga 15272 Query: 272 tcttcagagagctcctccatatgtctcaggaggagtt 308 ||||| |||||||||| || |||||||||||||| Sbjct: 15273 tcttcgcagagctcctcaggatctctcaggaggagtt 15309 Score = 48.1 bits (24), Expect = 0.023 Identities = 42/48 (87%) Strand = Plus / Plus Query: 72 catggtcagtgccaagagaatcgctcaactagcaaagaagtggcaaag 119 |||| |||||||||||||| |||||||| | | |||||||||||||| Sbjct: 15073 catgatcagtgccaagagactcgctcaaatggtgaagaagtggcaaag 15120 Score = 44.1 bits (22), Expect = 0.36 Identities = 52/62 (83%) Strand = Plus / Minus Query: 292 atgtctcaggaggagtttggttttgtaagcggtgatggcagaatcacgttgccctgtgat 351 |||||||||||||||||||| || | | | | |||||||| ||||||||||| || ||| Sbjct: 37790 atgtctcaggaggagtttggcttcgcaggtgacgatggcaggatcacgttgccgtgcgat 37731 Query: 352 gc 353 || Sbjct: 37730 gc 37729 Score = 44.1 bits (22), Expect = 0.36 Identities = 46/54 (85%) Strand = Plus / Plus Query: 72 catggtcagtgccaagagaatcgctcaactagcaaagaagtggcaaagggtagc 125 |||| |||| ||||||||| | | |||| | |||||||||||||||||| |||| Sbjct: 23377 catgatcagcgccaagagattggttcaattggcaaagaagtggcaaaggatagc 23430 Score = 44.1 bits (22), Expect = 0.36 Identities = 46/54 (85%) Strand = Plus / Plus Query: 234 gcggtttgaggtgccattggcgtaccttggcacactgatcttcagagagctcct 287 |||||| |||||||||||| ||||||| ||||| | | ||||| | |||||||| Sbjct: 8699 gcggttcgaggtgccattgccgtacctaggcacgccgctcttcggcgagctcct 8752 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Plus Query: 72 catggtcagtgccaagagaatcgctcaactagcaaagaagtggcaaagg 120 |||| |||| |||||||| || ||||| ||||||||||| |||| |||| Sbjct: 40357 catgatcagcgccaagaggattgctcagctagcaaagaaatggcgaagg 40405 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 72 catggtcagtgccaagagaatcgctcaactagcaaagaagtggca 116 |||| ||||||||| |||| | |||||||| || ||||||||||| Sbjct: 17190 catgatcagtgccaggagacttgctcaactggccaagaagtggca 17234
>dbj|AK062365.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-H09, full insert sequence Length = 614 Score = 79.8 bits (40), Expect = 7e-12 Identities = 85/100 (85%) Strand = Plus / Plus Query: 212 tcatgtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggcacactga 271 |||||||||| ||||| ||| ||||||||||||| || ||||||| ||| | ||| ||| Sbjct: 221 tcatgtacactgctgatgggcggcggtttgaggtcccgttggcgttcctcgccacgatga 280 Query: 272 tcttcagagagctcctccatatgtctcaggaggagtttgg 311 ||||| |||||||||| |||||||||||||||||||| Sbjct: 281 tcttcgcagagctcctcaggatgtctcaggaggagtttgg 320 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 72 catggtcagtgccaagagaatcgctcaactagcaaagaagtggcaaagggtagcatccct 131 |||| ||||||||||||| |||||||| | ||||||||||||||||| ||||| |||| Sbjct: 81 catgatcagtgccaagaggctcgctcaaatggcaaagaagtggcaaagaatagcagccct 140 Query: 132 caggaggaag 141 | |||||||| Sbjct: 141 cgggaggaag 150
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 73.8 bits (37), Expect = 4e-10 Identities = 85/101 (84%) Strand = Plus / Minus Query: 216 gtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggcacactgatctt 275 |||||| || |||||| |||||||||||||||||||| |||||||||||| || || | Sbjct: 14277444 gtacaccgccgacggggcgcggtttgaggtgccattggtgtaccttggcacgatggtcct 14277385 Query: 276 cagagagctcctccatatgtctcaggaggagtttggttttg 316 | | ||||||||| |||||||| ||||||||||| |||| Sbjct: 14277384 cggcgagctcctcgtcatgtctcaagaggagtttggctttg 14277344 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/97 (83%) Strand = Plus / Plus Query: 215 tgtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggcacactgatct 274 ||||||| || |||||| |||||| ||||||||||||| ||||||||||| || ||| Sbjct: 10029761 tgtacaccgccgacggggcgcggttcgaggtgccattggtgtaccttggcatgatggtct 10029820 Query: 275 tcagagagctcctccatatgtctcaggaggagtttgg 311 || | ||||||||| |||||||| ||||||||||| Sbjct: 10029821 tcggcgagctcctcgccatgtctcaagaggagtttgg 10029857 Score = 40.1 bits (20), Expect = 5.6 Identities = 80/100 (80%) Strand = Plus / Minus Query: 243 ggtgccattggcgtaccttggcacactgatcttcagagagctcctccatatgtctcagga 302 ||||||||||| ||||||| |||| || | ||| | ||||||||| |||||||| || Sbjct: 29681597 ggtgccattggtgtacctttgcacggtggttttcggcgagctcctcgccatgtctcaaga 29681538 Query: 303 ggagtttggttttgtaagcggtgatggcagaatcacgttg 342 ||| ||||| || | ||| ||||||||| ||||||||| Sbjct: 29681537 ggaatttggcttcgccggcgatgatggcaggatcacgttg 29681498
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 73.8 bits (37), Expect = 4e-10 Identities = 85/101 (84%) Strand = Plus / Minus Query: 216 gtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggcacactgatctt 275 |||||| || |||||| |||||||||||||||||||| |||||||||||| || || | Sbjct: 26673 gtacaccgccgacggggcgcggtttgaggtgccattggtgtaccttggcacgatggtcct 26614 Query: 276 cagagagctcctccatatgtctcaggaggagtttggttttg 316 | | ||||||||| |||||||| ||||||||||| |||| Sbjct: 26613 cggcgagctcctcgtcatgtctcaagaggagtttggctttg 26573
>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAb0012F18, complete sequence Length = 122159 Score = 73.8 bits (37), Expect = 4e-10 Identities = 85/101 (84%) Strand = Plus / Minus Query: 216 gtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggcacactgatctt 275 |||||| || |||||| |||||||||||||||||||| |||||||||||| || || | Sbjct: 88832 gtacaccgccgacggggcgcggtttgaggtgccattggtgtaccttggcacgatggtcct 88773 Query: 276 cagagagctcctccatatgtctcaggaggagtttggttttg 316 | | ||||||||| |||||||| ||||||||||| |||| Sbjct: 88772 cggcgagctcctcgtcatgtctcaagaggagtttggctttg 88732
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 73.8 bits (37), Expect = 4e-10 Identities = 85/101 (84%) Strand = Plus / Minus Query: 216 gtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggcacactgatctt 275 |||||| || |||||| |||||||||||||||||||| |||||||||||| || || | Sbjct: 14272419 gtacaccgccgacggggcgcggtttgaggtgccattggtgtaccttggcacgatggtcct 14272360 Query: 276 cagagagctcctccatatgtctcaggaggagtttggttttg 316 | | ||||||||| |||||||| ||||||||||| |||| Sbjct: 14272359 cggcgagctcctcgtcatgtctcaagaggagtttggctttg 14272319 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/97 (83%) Strand = Plus / Plus Query: 215 tgtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggcacactgatct 274 ||||||| || |||||| |||||| ||||||||||||| ||||||||||| || ||| Sbjct: 10027882 tgtacaccgccgacggggcgcggttcgaggtgccattggtgtaccttggcatgatggtct 10027941 Query: 275 tcagagagctcctccatatgtctcaggaggagtttgg 311 || | ||||||||| |||||||| ||||||||||| Sbjct: 10027942 tcggcgagctcctcgccatgtctcaagaggagtttgg 10027978 Score = 40.1 bits (20), Expect = 5.6 Identities = 80/100 (80%) Strand = Plus / Minus Query: 243 ggtgccattggcgtaccttggcacactgatcttcagagagctcctccatatgtctcagga 302 ||||||||||| ||||||| |||| || | ||| | ||||||||| |||||||| || Sbjct: 29773019 ggtgccattggtgtacctttgcacggtggttttcggcgagctcctcgccatgtctcaaga 29772960 Query: 303 ggagtttggttttgtaagcggtgatggcagaatcacgttg 342 ||| ||||| || | ||| ||||||||| ||||||||| Sbjct: 29772959 ggaatttggcttcgccggcgatgatggcaggatcacgttg 29772920
>dbj|AK071560.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101E08, full insert sequence Length = 1567 Score = 71.9 bits (36), Expect = 2e-09 Identities = 87/104 (83%) Strand = Plus / Minus Query: 211 gtcatgtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggcacactg 270 ||||||||||||||||| ||||||||||| ||||| || ||| ||||||||||||| | Sbjct: 606 gtcatgtacacagctgatgggaggcggttcgaggtcccgttgacgtaccttggcaccgcg 547 Query: 271 atcttcagagagctcctccatatgtctcaggaggagtttggttt 314 ||||||| || ||||| ||||| ||||||||||| ||||| Sbjct: 546 gtcttcagtgaactcctgaggatgtcccaggaggagttcggttt 503
>gb|AC137075.2| Genomic sequence for Oryza sativa, Nipponbare striain, clone OSJNBb0027B12, from chromosome 3, complete sequence Length = 127426 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/97 (83%) Strand = Plus / Plus Query: 215 tgtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggcacactgatct 274 ||||||| || |||||| |||||| ||||||||||||| ||||||||||| || ||| Sbjct: 79677 tgtacaccgccgacggggcgcggttcgaggtgccattggtgtaccttggcatgatggtct 79736 Query: 275 tcagagagctcctccatatgtctcaggaggagtttgg 311 || | ||||||||| |||||||| ||||||||||| Sbjct: 79737 tcggcgagctcctcgccatgtctcaagaggagtttgg 79773
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 58.0 bits (29), Expect = 2e-05 Identities = 80/97 (82%) Strand = Plus / Plus Query: 215 tgtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggcacactgatct 274 |||| ||||| |||||| |||||| |||||| ||||||||||||||||| | | ||| Sbjct: 22212213 tgtagacagccgacggggtgcggttcaaggtgctattggcgtaccttggcatagcggtct 22212272 Query: 275 tcagagagctcctccatatgtctcaggaggagtttgg 311 |||| ||||||||| |||||||| |||||||||| Sbjct: 22212273 tcagtgagctcctcgccatgtctcaaaaggagtttgg 22212309 Score = 40.1 bits (20), Expect = 5.6 Identities = 80/100 (80%) Strand = Plus / Plus Query: 243 ggtgccattggcgtaccttggcacactgatcttcagagagctcctccatatgtctcagga 302 ||||||||||| ||||||| |||| || | ||| | ||||||||| |||||||| || Sbjct: 28986437 ggtgccattggtgtaccttcgcacggtggttttcggcgagctcctcgccatgtctcaaga 28986496 Query: 303 ggagtttggttttgtaagcggtgatggcagaatcacgttg 342 ||| ||||| || | ||| ||||||||| ||||||||| Sbjct: 28986497 ggaatttggcttcgccggcgatgatggcaggatcacgttg 28986536
>dbj|AP005658.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0620D11 Length = 140245 Score = 58.0 bits (29), Expect = 2e-05 Identities = 80/97 (82%) Strand = Plus / Plus Query: 215 tgtacacagctgacgggaggcggtttgaggtgccattggcgtaccttggcacactgatct 274 |||| ||||| |||||| |||||| |||||| ||||||||||||||||| | | ||| Sbjct: 129512 tgtagacagccgacggggtgcggttcaaggtgctattggcgtaccttggcatagcggtct 129571 Query: 275 tcagagagctcctccatatgtctcaggaggagtttgg 311 |||| ||||||||| |||||||| |||||||||| Sbjct: 129572 tcagtgagctcctcgccatgtctcaaaaggagtttgg 129608
>ref|XM_450200.1| Oryza sativa (japonica cultivar-group), mRNA Length = 894 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Plus Query: 213 catgtacacagctgacgggaggcggtttgaggtgccattggcgtacct 260 ||||||||| || |||||||||||||| ||||||||||| ||||||| Sbjct: 123 catgtacacggcagacgggaggcggttcaaggtgccattgccgtacct 170
>dbj|AK064274.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-F01, full insert sequence Length = 1406 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 213 catgtacacagctgacgggaggcggtttgaggtgccattggcgtacct 260 ||||||||| || |||||||||||||| ||||||||||| ||||||| Sbjct: 497 catgtacacggcagacgggaggcggttcaaggtgccattgccgtacct 450
>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone: P0705E11 Length = 140729 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 213 catgtacacagctgacgggaggcggtttgaggtgccattggcgtacct 260 ||||||||| || |||||||||||||| ||||||||||| ||||||| Sbjct: 139124 catgtacacggcagacgggaggcggttcaaggtgccattgccgtacct 139077
>dbj|AK058556.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-D04, full insert sequence Length = 685 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 234 gcggtttgaggtgccattggcgtaccttggcac 266 |||||| |||||||||||||||||||| ||||| Sbjct: 278 gcggttcgaggtgccattggcgtacctcggcac 310 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Plus Query: 72 catggtcagtgccaagagaatcgctcaactagcaaagaagtggcaaagg 120 |||| |||| |||||||| || ||||| ||||||||||| |||| |||| Sbjct: 104 catgatcagcgccaagaggattgctcagctagcaaagaaatggcgaagg 152
>dbj|AK062898.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-E11, full insert sequence Length = 586 Score = 44.1 bits (22), Expect = 0.36 Identities = 46/54 (85%) Strand = Plus / Plus Query: 234 gcggtttgaggtgccattggcgtaccttggcacactgatcttcagagagctcct 287 |||||| |||||||||||| ||||||| ||||| | | ||||| | |||||||| Sbjct: 260 gcggttcgaggtgccattgccgtacctaggcacgccgctcttcggcgagctcct 313
>gb|AC068006.10| Mus musculus chromosome 7, clone RP23-6I17, complete sequence Length = 203141 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 186 ggcagtggcaggcaaaggctg 206 ||||||||||||||||||||| Sbjct: 105470 ggcagtggcaggcaaaggctg 105450
>emb|AJ276505.2|MMU276505 Mus musculus genomic fragment, 281000 bp, chromosome 7 Length = 281000 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 ggcagtggcaggcaaaggctg 206 ||||||||||||||||||||| Sbjct: 117401 ggcagtggcaggcaaaggctg 117421
>dbj|AK046269.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230363H02 product:Cysteinyl-tRNA synthetase, full insert sequence Length = 2213 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 ggcagtggcaggcaaaggctg 206 ||||||||||||||||||||| Sbjct: 376 ggcagtggcaggcaaaggctg 396
>emb|X79211.1|ZMAUX2 Z.mays (cv. Brio) aux2 mRNA Length = 625 Score = 42.1 bits (21), Expect = 1.4 Identities = 90/113 (79%) Strand = Plus / Plus Query: 235 cggtttgaggtgccattggcgtaccttggcacactgatcttcagagagctcctccatatg 294 ||||| |||||||| |||||| |||| |||| | ||||| | |||||||| || ||| Sbjct: 232 cggttcgaggtgccgctggcgtgccttagcacccctgtcttcggggagctcctgcagatg 291 Query: 295 tctcaggaggagtttggttttgtaagcggtgatggcagaatcacgttgccctg 347 || ||||||||||||| || | |||| |||||||| |||||| ||||||| Sbjct: 292 tcagaggaggagtttggcttcgcgggcggcgatggcaggatcacgctgccctg 344
>gb|BC096388.1| Xenopus tropicalis erythrocyte protein band 4.1-like 3, mRNA (cDNA clone IMAGE:7003334), partial cds Length = 3780 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 ctcaagtagagtccccagtt 49 |||||||||||||||||||| Sbjct: 2240 ctcaagtagagtccccagtt 2259
>gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence Length = 161073 Score = 40.1 bits (20), Expect = 5.6 Identities = 80/100 (80%) Strand = Plus / Plus Query: 243 ggtgccattggcgtaccttggcacactgatcttcagagagctcctccatatgtctcagga 302 ||||||||||| ||||||| |||| || | ||| | ||||||||| |||||||| || Sbjct: 81077 ggtgccattggtgtacctttgcacggtggttttcggcgagctcctcgccatgtctcaaga 81136 Query: 303 ggagtttggttttgtaagcggtgatggcagaatcacgttg 342 ||| ||||| || | ||| ||||||||| ||||||||| Sbjct: 81137 ggaatttggcttcgccggcgatgatggcaggatcacgttg 81176
>gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 genomic sequence, complete sequence Length = 163712 Score = 40.1 bits (20), Expect = 5.6 Identities = 80/100 (80%) Strand = Plus / Plus Query: 243 ggtgccattggcgtaccttggcacactgatcttcagagagctcctccatatgtctcagga 302 ||||||||||| ||||||| |||| || | ||| | ||||||||| |||||||| || Sbjct: 89780 ggtgccattggtgtacctttgcacggtggttttcggcgagctcctcgccatgtctcaaga 89839 Query: 303 ggagtttggttttgtaagcggtgatggcagaatcacgttg 342 ||| ||||| || | ||| ||||||||| ||||||||| Sbjct: 89840 ggaatttggcttcgccggcgatgatggcaggatcacgttg 89879
>gb|AY826517.1| Spinacia oleracea DNA-directed RNA polymerase alpha subunit (NRPD1b) mRNA, partial cds Length = 5709 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 gaggagtttggttttgtaag 320 |||||||||||||||||||| Sbjct: 1618 gaggagtttggttttgtaag 1637
>gb|AC114645.9| Mus musculus chromosome 9, clone RP24-131G14, complete sequence Length = 214734 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 agcaaagaagtggcaaagggtagc 125 ||||||||||||||||||| |||| Sbjct: 180513 agcaaagaagtggcaaaggctagc 180536
>emb|CT025506.2| Xenopus tropicalis finished cDNA, clone TTpA003i11 Length = 3594 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 ctcaagtagagtccccagtt 49 |||||||||||||||||||| Sbjct: 2190 ctcaagtagagtccccagtt 2209
>emb|CT025320.2| Xenopus tropicalis finished cDNA, clone TNeu048m20 Length = 5019 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggcagtggcaggcaaaggct 205 |||||||||||||||||||| Sbjct: 1733 ggcagtggcaggcaaaggct 1714
>emb|AL591031.3| Human DNA sequence from clone RP11-151D14 on chromosome 9q13-21.2 Contains a novel gene and the ALDH1A1 gene for aldehyde dehydrogenase 1 family member A1, complete sequence Length = 136895 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 374 tgttcttgcttggaagaaatgctt 397 |||||||| ||||||||||||||| Sbjct: 94086 tgttcttgtttggaagaaatgctt 94109
>emb|AL365444.11| Human DNA sequence from clone RP11-115P16 on chromosome 1 Contains the 3' UTR of a novel gene (DKFZp761P211), the ITPKB gene for inositol 1,4,5-trisphosphate 3-kinase B, two novel genes, a ribosomal protein S27 (metallopanstimulin 1) (RPS27) pseudogene and a CpG island, complete sequence Length = 181144 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 atccctcaggaggaagcagc 145 |||||||||||||||||||| Sbjct: 5756 atccctcaggaggaagcagc 5737
>emb|AL049634.8|HSJ576H24 Human DNA sequence from clone RP4-576H24 on chromosome 20 Contains the PTPNS1L12 gene for protein tyrosine phosphatase (non-receptor type substrate 1-like 2), a PTPNS pseudogene and part of the SIRPB1 gene for signal regulatory protein beta 1, complete sequence Length = 115478 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 catccctcaggaggaagcag 144 |||||||||||||||||||| Sbjct: 94550 catccctcaggaggaagcag 94569
>emb|BX510923.8| Zebrafish DNA sequence from clone CH211-214J8 in linkage group 5, complete sequence Length = 165838 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 atgcaatacattatgttctt 380 |||||||||||||||||||| Sbjct: 94238 atgcaatacattatgttctt 94219
>emb|AJ550003.1|ZMA550003 Zea mays saur3 gene for putative small auxin up RNA Length = 1662 Score = 40.1 bits (20), Expect = 5.6 Identities = 56/68 (82%) Strand = Plus / Plus Query: 280 gagctcctccatatgtctcaggaggagtttggttttgtaagcggtgatggcagaatcacg 339 |||||||| || ||||| ||||||||||||| || | |||| |||||||| |||||| Sbjct: 875 gagctcctgcagatgtcagaggaggagtttggcttcgcgggcggcgatggcaggatcacg 934 Query: 340 ttgccctg 347 ||||||| Sbjct: 935 ctgccctg 942
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.6 Identities = 80/100 (80%) Strand = Plus / Minus Query: 243 ggtgccattggcgtaccttggcacactgatcttcagagagctcctccatatgtctcagga 302 ||||||||||| ||||||| |||| || | ||| | ||||||||| |||||||| || Sbjct: 3333217 ggtgccattggtgtacctttgcacggtggttttcggcgagctcctcgccatgtctcaaga 3333158 Query: 303 ggagtttggttttgtaagcggtgatggcagaatcacgttg 342 ||| ||||| || | ||| ||||||||| ||||||||| Sbjct: 3333157 ggaatttggcttcgccggcgatgatggcaggatcacgttg 3333118
>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0596H10 Length = 166570 Score = 40.1 bits (20), Expect = 5.6 Identities = 80/100 (80%) Strand = Plus / Plus Query: 243 ggtgccattggcgtaccttggcacactgatcttcagagagctcctccatatgtctcagga 302 ||||||||||| ||||||| |||| || | ||| | ||||||||| |||||||| || Sbjct: 1424 ggtgccattggtgtaccttcgcacggtggttttcggcgagctcctcgccatgtctcaaga 1483 Query: 303 ggagtttggttttgtaagcggtgatggcagaatcacgttg 342 ||| ||||| || | ||| ||||||||| ||||||||| Sbjct: 1484 ggaatttggcttcgccggcgatgatggcaggatcacgttg 1523
>dbj|AP004278.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0468G03 Length = 143918 Score = 40.1 bits (20), Expect = 5.6 Identities = 80/100 (80%) Strand = Plus / Plus Query: 243 ggtgccattggcgtaccttggcacactgatcttcagagagctcctccatatgtctcagga 302 ||||||||||| ||||||| |||| || | ||| | ||||||||| |||||||| || Sbjct: 136481 ggtgccattggtgtaccttcgcacggtggttttcggcgagctcctcgccatgtctcaaga 136540 Query: 303 ggagtttggttttgtaagcggtgatggcagaatcacgttg 342 ||| ||||| || | ||| ||||||||| ||||||||| Sbjct: 136541 ggaatttggcttcgccggcgatgatggcaggatcacgttg 136580
>gb|BT024059.1| Zea mays clone EL01N0440H03 mRNA sequence Length = 1989 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 aactagcaaagaagtggcaaaggg 121 |||| ||||||||||||||||||| Sbjct: 939 aacttgcaaagaagtggcaaaggg 962
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.6 Identities = 80/100 (80%) Strand = Plus / Minus Query: 243 ggtgccattggcgtaccttggcacactgatcttcagagagctcctccatatgtctcagga 302 ||||||||||| ||||||| |||| || | ||| | ||||||||| |||||||| || Sbjct: 3341922 ggtgccattggtgtacctttgcacggtggttttcggcgagctcctcgccatgtctcaaga 3341863 Query: 303 ggagtttggttttgtaagcggtgatggcagaatcacgttg 342 ||| ||||| || | ||| ||||||||| ||||||||| Sbjct: 3341862 ggaatttggcttcgccggcgatgatggcaggatcacgttg 3341823 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,630,619 Number of Sequences: 3902068 Number of extensions: 3630619 Number of successful extensions: 65935 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 65659 Number of HSP's gapped (non-prelim): 279 length of query: 418 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 396 effective length of database: 17,147,199,772 effective search space: 6790291109712 effective search space used: 6790291109712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)