ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet97f06 |
|---|---|
| Clone Library Name | barley_pub |
>SYD_RALEJ (Q475W2) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 602 Score = 30.0 bits (66), Expect = 1.8 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = -1 Query: 160 QHRRTHGKIIEINRHDRELLSQIRCRP 80 Q RR HG +I I+ DRE L Q+ C P Sbjct: 28 QRRRDHGGVIFIDLRDREGLVQVVCDP 54
>SYD_BURTA (Q2T132) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 600 Score = 30.0 bits (66), Expect = 1.8 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = -1 Query: 160 QHRRTHGKIIEINRHDRELLSQIRCRP 80 Q RR HG +I I+ DRE L Q+ C P Sbjct: 27 QRRRDHGGVIFIDLRDREGLVQVVCDP 53
>SYD_BURS3 (Q39D20) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 600 Score = 30.0 bits (66), Expect = 1.8 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = -1 Query: 160 QHRRTHGKIIEINRHDRELLSQIRCRP 80 Q RR HG +I I+ DRE L Q+ C P Sbjct: 27 QRRRDHGGVIFIDLRDREGLVQVVCDP 53
>SYD_DECAR (Q47IE0) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 599 Score = 29.3 bits (64), Expect = 3.1 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -1 Query: 154 RRTHGKIIEINRHDRELLSQIRCRP 80 RR HG +I I+ DRE L+Q+ C P Sbjct: 27 RRDHGGVIFIDLRDREGLAQVVCDP 51
>SYD_GEOSL (Q74D56) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 594 Score = 28.9 bits (63), Expect = 4.0 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -1 Query: 154 RRTHGKIIEINRHDRELLSQIRCRPATEPK 65 RR HG +I I+ DRE L+QI PA P+ Sbjct: 35 RRDHGGLIFIDLRDREGLAQIVFDPAKAPE 64
>SYD_COXBU (Q83BE5) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 590 Score = 28.5 bits (62), Expect = 5.3 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -1 Query: 154 RRTHGKIIEINRHDRELLSQIRCRP 80 RR HG +I I+ DRE L Q+ C P Sbjct: 27 RRDHGGLIFIDLRDREGLVQVVCNP 51
>SYD_BURPS (Q63X93) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 598 Score = 28.1 bits (61), Expect = 6.9 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -1 Query: 154 RRTHGKIIEINRHDRELLSQIRCRP 80 RR HG +I I+ DRE L Q+ C P Sbjct: 27 RRDHGGVIFIDLRDREGLVQVVCDP 51
>SYD_BURP1 (Q3JVY8) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 598 Score = 28.1 bits (61), Expect = 6.9 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -1 Query: 154 RRTHGKIIEINRHDRELLSQIRCRP 80 RR HG +I I+ DRE L Q+ C P Sbjct: 27 RRDHGGVIFIDLRDREGLVQVVCDP 51
>SYD_BURMA (Q62MP0) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 598 Score = 28.1 bits (61), Expect = 6.9 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -1 Query: 154 RRTHGKIIEINRHDRELLSQIRCRP 80 RR HG +I I+ DRE L Q+ C P Sbjct: 27 RRDHGGVIFIDLRDREGLVQVVCDP 51
>SYD_PELCD (Q3A5R7) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 596 Score = 28.1 bits (61), Expect = 6.9 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = -1 Query: 160 QHRRTHGKIIEINRHDRELLSQIRCRPATEPK 65 Q RR HG +I I+ DR+ ++Q+ P +P+ Sbjct: 33 QRRRDHGGLIFIDLRDRQGIAQLALDPDRDPE 64
>SYD_RALSO (Q8Y270) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 605 Score = 28.1 bits (61), Expect = 6.9 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -1 Query: 154 RRTHGKIIEINRHDRELLSQIRCRP 80 RR HG +I I+ DRE L Q+ C P Sbjct: 27 RRDHGGVIFIDLRDREGLVQVVCDP 51
>SYD_AZOSE (Q5P280) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 599 Score = 28.1 bits (61), Expect = 6.9 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -1 Query: 154 RRTHGKIIEINRHDRELLSQIRCRP 80 RR HG +I I+ DRE L Q+ C P Sbjct: 27 RRDHGGVIFIDLRDREGLVQVVCDP 51
>YJ41_YEAST (P47121) Hypothetical protein YJR071W precursor| Length = 122 Score = 27.7 bits (60), Expect = 9.0 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -3 Query: 71 TQGRISCRRCHGQTRSW*CFS 9 T+ +SC R H T SW CFS Sbjct: 40 TKMSLSCSRVHSSTFSWKCFS 60
>SYD_NITEU (Q82SQ5) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 593 Score = 27.7 bits (60), Expect = 9.0 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -1 Query: 154 RRTHGKIIEINRHDRELLSQIRCRP 80 RR HG +I I+ DRE + QI C P Sbjct: 27 RRDHGGVIFIDLRDREGIVQIVCDP 51
>SYD_NITMU (Q2YBG1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 588 Score = 27.7 bits (60), Expect = 9.0 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = -1 Query: 154 RRTHGKIIEINRHDRELLSQIRCRP 80 RR HG +I ++ DRE L Q+ C P Sbjct: 27 RRDHGGVIFVDLRDREGLVQVVCDP 51
>SYD_MOOTA (Q2RHW1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 600 Score = 27.7 bits (60), Expect = 9.0 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -1 Query: 154 RRTHGKIIEINRHDRELLSQIRCRPATEP 68 RR HG +I I+ DR L Q+ C P + P Sbjct: 37 RRDHGGLIFIDLRDRSGLVQVVCDPKSGP 65 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,068,952 Number of Sequences: 219361 Number of extensions: 360197 Number of successful extensions: 1069 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1061 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1069 length of database: 80,573,946 effective HSP length: 28 effective length of database: 74,431,838 effective search space used: 1786364112 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
