ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet97e06 |
|---|---|
| Clone Library Name | barley_pub |
>XTH_WHEAT (Q41542) Probable xyloglucan endotransglucosylase/hydrolase| precursor (EC 2.4.1.207) Length = 293 Score = 86.3 bits (212), Expect = 2e-17 Identities = 41/60 (68%), Positives = 44/60 (73%) Frame = +2 Query: 98 MKXXXXXXXXXXXXXXXRGIAAAPPRKPVDVPFEKNYVPTWAEDHIHYVNGGREVQLSLD 277 MK RG+AAAP RKPVDVPF+KNYVPTWA+DHIHYVNGGREVQLSLD Sbjct: 1 MKATAGALLAVVAAVLLRGVAAAP-RKPVDVPFDKNYVPTWAQDHIHYVNGGREVQLSLD 59
>XTHA_PHAAN (Q41638) Xyloglucan endotransglucosylase/hydrolase protein A| precursor (EC 2.4.1.207) (VaXTH1) Length = 292 Score = 65.9 bits (159), Expect = 3e-11 Identities = 28/39 (71%), Positives = 32/39 (82%) Frame = +2 Query: 161 AAPPRKPVDVPFEKNYVPTWAEDHIHYVNGGREVQLSLD 277 AA PR P+DVPF +NYVPTWA DHI Y+NGG E+QL LD Sbjct: 20 AANPRTPIDVPFGRNYVPTWAFDHIKYLNGGSEIQLHLD 58
>XTHB_PHAAN (Q8LNZ5) Probable xyloglucan endotransglucosylase/hydrolase protein| B precursor (EC 2.4.1.207) (VaXTH2) Length = 293 Score = 65.1 bits (157), Expect = 4e-11 Identities = 27/38 (71%), Positives = 31/38 (81%) Frame = +2 Query: 164 APPRKPVDVPFEKNYVPTWAEDHIHYVNGGREVQLSLD 277 A PR+PVDVPF +NY+PTWA DHI Y NGG E+QL LD Sbjct: 22 AAPRRPVDVPFGRNYIPTWAFDHIKYFNGGSEIQLHLD 59
>XTH_SOYBN (Q39857) Probable xyloglucan endotransglucosylase/hydrolase| precursor (EC 2.4.1.207) (Fragment) Length = 295 Score = 60.8 bits (146), Expect = 8e-10 Identities = 26/38 (68%), Positives = 30/38 (78%) Frame = +2 Query: 164 APPRKPVDVPFEKNYVPTWAEDHIHYVNGGREVQLSLD 277 A PR+PVDV F +NYVPTWA DHI Y NGG ++QL LD Sbjct: 23 ANPRRPVDVQFGRNYVPTWAFDHIKYFNGGSDIQLHLD 60
>XTH_BRAOB (Q6YDN9) Xyloglucan endotransglucosylase/hydrolase precursor (EC| 2.4.1.207) (BobXET16A) Length = 295 Score = 60.5 bits (145), Expect = 1e-09 Identities = 26/41 (63%), Positives = 31/41 (75%) Frame = +2 Query: 155 IAAAPPRKPVDVPFEKNYVPTWAEDHIHYVNGGREVQLSLD 277 + A PPRK +DVPF +NYVPTWA DH +NGG E+QL LD Sbjct: 21 VMAIPPRKAIDVPFGRNYVPTWAFDHQKQLNGGSELQLILD 61
>XTH4_ARATH (Q39099) Xyloglucan endotransglucosylase/hydrolase protein 4| precursor (EC 2.4.1.207) (At-XTH4) (XTH-4) Length = 296 Score = 59.7 bits (143), Expect = 2e-09 Identities = 26/41 (63%), Positives = 30/41 (73%) Frame = +2 Query: 155 IAAAPPRKPVDVPFEKNYVPTWAEDHIHYVNGGREVQLSLD 277 + A PPRK +DVPF +NYVPTWA DH NGG E+QL LD Sbjct: 22 VMAIPPRKAIDVPFGRNYVPTWAFDHQKQFNGGSELQLILD 62
>XTH5_ARATH (Q9XIW1) Probable xyloglucan endotransglucosylase/hydrolase protein| 5 precursor (EC 2.4.1.207) (At-XTH5) (XTH-5) Length = 293 Score = 58.5 bits (140), Expect = 4e-09 Identities = 24/37 (64%), Positives = 29/37 (78%) Frame = +2 Query: 167 PPRKPVDVPFEKNYVPTWAEDHIHYVNGGREVQLSLD 277 PP+K ++VPF +NY PTWA DHI Y+NGG EV L LD Sbjct: 23 PPKKSINVPFGRNYFPTWAFDHIKYLNGGSEVHLVLD 59
>XTH_TOBAC (P93349) Probable xyloglucan endotransglucosylase/hydrolase protein| precursor (EC 2.4.1.207) Length = 295 Score = 55.5 bits (132), Expect = 4e-08 Identities = 24/36 (66%), Positives = 27/36 (75%) Frame = +2 Query: 170 PRKPVDVPFEKNYVPTWAEDHIHYVNGGREVQLSLD 277 PRKPVDVPF KNY P+WA HI Y++GG V L LD Sbjct: 24 PRKPVDVPFWKNYEPSWASHHIKYLSGGSTVDLVLD 59
>XTH1_LYCES (Q40144) Probable xyloglucan endotransglucosylase/hydrolase 1| precursor (EC 2.4.1.207) (LeXTH1) Length = 296 Score = 53.1 bits (126), Expect = 2e-07 Identities = 22/36 (61%), Positives = 26/36 (72%) Frame = +2 Query: 170 PRKPVDVPFEKNYVPTWAEDHIHYVNGGREVQLSLD 277 PR+PVDVPF KNY P+WA HI ++NGG L LD Sbjct: 25 PRRPVDVPFWKNYEPSWASHHIKFLNGGTTTDLILD 60
>XTH2_ARATH (Q9SV60) Putative xyloglucan endotransglucosylase/hydrolase protein| 2 precursor (EC 2.4.1.207) (At-XTH2) (XTH-2) Length = 292 Score = 42.0 bits (97), Expect = 4e-04 Identities = 17/30 (56%), Positives = 23/30 (76%) Frame = +2 Query: 188 VPFEKNYVPTWAEDHIHYVNGGREVQLSLD 277 + F+ NYV TW +DHI +N G+EVQLS+D Sbjct: 30 IDFDVNYVVTWGQDHILKLNQGKEVQLSMD 59
>XTH1_ARATH (Q9SV61) Putative xyloglucan endotransglucosylase/hydrolase protein| 1 precursor (EC 2.4.1.207) (At-XTH1) (XTH-1) Length = 295 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/30 (53%), Positives = 23/30 (76%) Frame = +2 Query: 188 VPFEKNYVPTWAEDHIHYVNGGREVQLSLD 277 V F+ NYV TW ++++ +N G+EVQLSLD Sbjct: 37 VGFDDNYVVTWGQNNVLKLNQGKEVQLSLD 66
>XTH3_ARATH (Q9LJR7) Probable xyloglucan endotransglucosylase/hydrolase protein| 3 precursor (EC 2.4.1.207) (At-XTH3) (XTH-3) Length = 290 Score = 33.5 bits (75), Expect = 0.14 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +2 Query: 188 VPFEKNYVPTWAEDHIHYVNGGREVQLSLD 277 V F +NY+ TW + H+ ++ G EV L +D Sbjct: 33 VTFGQNYIVTWGQSHVSTLHSGEEVDLYMD 62
>XTH7_ARATH (Q8LER3) Probable xyloglucan endotransglucosylase/hydrolase protein| 7 precursor (EC 2.4.1.207) (At-XTH7) (XTH-7) Length = 293 Score = 32.3 bits (72), Expect = 0.32 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +2 Query: 194 FEKNYVPTWAEDHIHYVNGGREVQLSLD 277 FE ++ W++ HI ++GGR +QL LD Sbjct: 34 FEDDFRIAWSDTHITQIDGGRAIQLKLD 61
>XTH26_ARATH (Q9SVV2) Putative xyloglucan endotransglucosylase/hydrolase protein| 26 precursor (EC 2.4.1.207) (At-XTH26) (XTH-26) Length = 292 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/32 (40%), Positives = 22/32 (68%) Frame = +2 Query: 182 VDVPFEKNYVPTWAEDHIHYVNGGREVQLSLD 277 V+ F KN++ TW +DH+ ++N G ++L LD Sbjct: 25 VEADFSKNFIVTWGKDHM-FMN-GTNLRLVLD 54
>XTH6_ARATH (Q8LF99) Probable xyloglucan endotransglucosylase/hydrolase protein| 6 precursor (EC 2.4.1.207) (At-XTH6) (XTH-6) Length = 292 Score = 28.1 bits (61), Expect = 6.1 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +2 Query: 194 FEKNYVPTWAEDHIHYVNGGREVQLSLD 277 F +++ W+E HI + G+ +QL LD Sbjct: 35 FVEDFKAAWSESHIRQMEDGKAIQLVLD 62
>XTH10_ARATH (Q9ZVK1) Probable xyloglucan endotransglucosylase/hydrolase protein| 10 precursor (EC 2.4.1.207) (At-XTH10) (XTH-10) Length = 299 Score = 28.1 bits (61), Expect = 6.1 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +2 Query: 194 FEKNYVPTWAEDHIHYVNGGREVQLSLD 277 F K++ TW+ H++ N GR L LD Sbjct: 37 FNKDFFVTWSPTHVNTSNDGRSRTLKLD 64
>PME17_CHICK (Q98917) Melanocyte protein Pmel 17 precursor (115 kDa melanosomal| matrix protein) Length = 763 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +2 Query: 17 HSAIVSSSTSQAIVSRSNRGGGREAGEMK 103 H AIV + A+V+ RGGGR G +K Sbjct: 4 HGAIVLLAALLALVTAQQRGGGRSRGGVK 32
>FBXW4_MOUSE (Q9JMJ2) F-box/WD-repeat protein 4 (F-box and WD-40 domain protein| 4) (Hagoromo protein) Length = 410 Score = 27.7 bits (60), Expect = 7.9 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = -1 Query: 217 CRDVVLLEWHVHRLPGRRCRDAS 149 CRD +LL+W ++P + +DAS Sbjct: 106 CRDRILLKWRYSQMPWMQLQDAS 128 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,544,888 Number of Sequences: 219361 Number of extensions: 444527 Number of successful extensions: 1319 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1294 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1319 length of database: 80,573,946 effective HSP length: 67 effective length of database: 65,876,759 effective search space used: 1581042216 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
