ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet97e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ABP20_PRUPE (O04011) Auxin-binding protein ABP20 precursor 45 4e-05
2AB19A_PRUPE (Q9ZRA4) Auxin-binding protein ABP19a precursor 44 9e-05
3AB19B_PRUPE (O04012) Auxin-binding protein ABP19b precursor 43 2e-04
4GLT3_ARATH (Q9S772) Putative germin-like protein subfamily T mem... 40 0.002
5GL31_ARATH (P94040) Germin-like protein subfamily 3 member 1 pre... 38 0.008
6GLT2_ARATH (Q9LMC9) Germin-like protein subfamily T member 2 pre... 37 0.014
7GLP1_BRANA (P46271) Germin-like protein 1 precursor 37 0.014
8GL23_ARATH (P93000) Germin-like protein subfamily 2 member 3 pre... 37 0.019
9GLT1_ARATH (P92995) Germin-like protein subfamily T member 1 pre... 37 0.019
10GLP1_SINAL (P45854) Germin-like protein 1 precursor 33 0.16
11GL25_ARATH (O65252) Probable germin-like protein subfamily 2 mem... 32 0.35
12GL33_ARATH (P94072) Germin-like protein subfamily 3 member 3 pre... 32 0.46
13NEC1_NICPL (Q9SPV5) Nectarin-1 precursor (EC 1.15.1.1) (Superoxi... 32 0.60
14NEC1_NICLS (Q94EG3) Nectarin-1 precursor (EC 1.15.1.1) (Superoxi... 32 0.60
15GL21_ARATH (P94014) Germin-like protein subfamily 2 member 1 pre... 31 1.0
16GLP1_IPONI (P45853) Germin-like protein precursor 30 1.8
17OXO2_HORVU (P45851) Oxalate oxidase 2 precursor (EC 1.2.3.4) (Ge... 29 3.9
18HPCG_ECOLI (P42270) 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (... 28 5.1

>ABP20_PRUPE (O04011) Auxin-binding protein ABP20 precursor|
          Length = 214

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 19/39 (48%), Positives = 27/39 (69%)
 Frame = +3

Query: 51  LLPVLISFLVLPFSAMALTQDFCVADLSCSDTPAGYPCK 167
           + P+L +F +L  S+ A  QDFCVADL+  + PAG+ CK
Sbjct: 7   IFPILFTFFLLLSSSNAAVQDFCVADLAAPEGPAGFSCK 45



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>AB19A_PRUPE (Q9ZRA4) Auxin-binding protein ABP19a precursor|
          Length = 209

 Score = 44.3 bits (103), Expect = 9e-05
 Identities = 19/39 (48%), Positives = 24/39 (61%)
 Frame = +3

Query: 51  LLPVLISFLVLPFSAMALTQDFCVADLSCSDTPAGYPCK 167
           + P+  +F +L  S+ A  QDFCVAD    D PAGY CK
Sbjct: 2   IFPIFFTFFLLLSSSHASVQDFCVADYKAPDGPAGYSCK 40



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>AB19B_PRUPE (O04012) Auxin-binding protein ABP19b precursor|
          Length = 209

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +3

Query: 51  LLPVLISFLVLPFSAMALTQDFCVADLSCSDTPAGYPCK 167
           + P+  +F +L  ++ A  QDFCVAD    D PAGY CK
Sbjct: 2   IFPIFFTFFLLLSTSHASVQDFCVADYKAPDGPAGYSCK 40



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>GLT3_ARATH (Q9S772) Putative germin-like protein subfamily T member 3|
           precursor
          Length = 227

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 19/38 (50%), Positives = 24/38 (63%)
 Frame = +3

Query: 75  LVLPFSAMALTQDFCVADLSCSDTPAGYPCKTGVGAGD 188
           L LP   +   QDFCVADL  + T +GYPCK+ V + D
Sbjct: 30  LSLPALKLNPFQDFCVADLQATPTNSGYPCKSQVTSED 67



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>GL31_ARATH (P94040) Germin-like protein subfamily 3 member 1 precursor|
           (AtGER1) (At-GERM1) (AtGLP1)
          Length = 208

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = +3

Query: 99  ALTQDFCVADLSCSDTPAGYPC 164
           A  QDFCVA+L  ++TPAGYPC
Sbjct: 17  ASVQDFCVANLKRAETPAGYPC 38



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>GLT2_ARATH (Q9LMC9) Germin-like protein subfamily T member 2 precursor|
          Length = 220

 Score = 37.0 bits (84), Expect = 0.014
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +3

Query: 108 QDFCVADLSCSDTPAGYPCKTGVGAGD 188
           QDFCV DL  S +  G+PCK+ V A D
Sbjct: 34  QDFCVGDLKASPSINGFPCKSSVSASD 60



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>GLP1_BRANA (P46271) Germin-like protein 1 precursor|
          Length = 207

 Score = 37.0 bits (84), Expect = 0.014
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 108 QDFCVADLSCSDTPAGYPC 164
           QDFCVA+L  ++TPAGYPC
Sbjct: 20  QDFCVANLKRAETPAGYPC 38



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>GL23_ARATH (P93000) Germin-like protein subfamily 2 member 3 precursor|
          Length = 219

 Score = 36.6 bits (83), Expect = 0.019
 Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +3

Query: 51  LLPVLISF-LVLPFSAMALT---QDFCVADLSCSDTPAGYPCK 167
           ++P+ ++F LV    A+A T   QDFCVADLS      GYPCK
Sbjct: 5   MIPIFVTFMLVAAHMALADTNMLQDFCVADLSNGLKVNGYPCK 47



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>GLT1_ARATH (P92995) Germin-like protein subfamily T member 1 precursor|
          Length = 220

 Score = 36.6 bits (83), Expect = 0.019
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +3

Query: 108 QDFCVADLSCSDTPAGYPCKTGVGAGD 188
           QDFCV DL  S +  G+PCK+ V A D
Sbjct: 34  QDFCVGDLKASASINGFPCKSAVSASD 60



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>GLP1_SINAL (P45854) Germin-like protein 1 precursor|
          Length = 211

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 60  VLISFLVLPFSAM--ALTQDFCVADLSCSDTPAGYPCK 167
           + I F++  FS++  A  QDFCVAD      P+GY CK
Sbjct: 5   IQIFFILSLFSSISFASVQDFCVADPKGPQNPSGYSCK 42



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>GL25_ARATH (O65252) Probable germin-like protein subfamily 2 member 5|
           precursor
          Length = 213

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 54  LPVLISFLVLPFSAMALTQDFCVADLSCSDTPAGYPCK 167
           L V+++ L +  ++  + QD CVADLS +    GY CK
Sbjct: 8   LVVVVTMLFVAMASAEMLQDVCVADLSNAVKVNGYTCK 45



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>GL33_ARATH (P94072) Germin-like protein subfamily 3 member 3 precursor|
           (AtGER3) (AtGLP2)
          Length = 211

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 93  AMALTQDFCVADLSCSDTPAGYPCK 167
           + A  QDFCVAD     +P+GY CK
Sbjct: 18  SFASVQDFCVADPKGPQSPSGYSCK 42



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>NEC1_NICPL (Q9SPV5) Nectarin-1 precursor (EC 1.15.1.1) (Superoxide dismutase|
           [Mn])
          Length = 229

 Score = 31.6 bits (70), Expect = 0.60
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 102 LTQDFCVADLSCSDTPAGYPCKTGVGAGD 188
           + QD CVADL       G+PCKT   A D
Sbjct: 37  MLQDVCVADLHSKVKVNGFPCKTNFTAAD 65



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>NEC1_NICLS (Q94EG3) Nectarin-1 precursor (EC 1.15.1.1) (Superoxide dismutase|
           [Mn])
          Length = 229

 Score = 31.6 bits (70), Expect = 0.60
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 102 LTQDFCVADLSCSDTPAGYPCKTGVGAGD 188
           + QD CVADL       G+PCKT   A D
Sbjct: 37  MLQDVCVADLHSKVKVNGFPCKTNFTAAD 65



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>GL21_ARATH (P94014) Germin-like protein subfamily 2 member 1 precursor|
          Length = 207

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 51  LLPVLISFLVLPFSAMALTQDFCVADLSCSDTPAGYPCK 167
           LL   +SF +   +   + QD CVADL       G+PCK
Sbjct: 10  LLLTTVSFFISSSADPDMLQDLCVADLPSGIKINGFPCK 48



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>GLP1_IPONI (P45853) Germin-like protein precursor|
          Length = 214

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 63  LISFLVLPFSAMALTQDFCVAD-LSCSDTPAGYPCK 167
           L++F V  F+A A   DFCVA+     DTP+G+ CK
Sbjct: 12  LLAFPV--FTANASVNDFCVANGPGARDTPSGFVCK 45



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>OXO2_HORVU (P45851) Oxalate oxidase 2 precursor (EC 1.2.3.4) (Germin)|
          Length = 224

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 108 QDFCVADLSCSDTPA-GYPCKTGVGAGD 188
           QDFCVADL        G+PCK    AGD
Sbjct: 30  QDFCVADLDGKAVSVNGHPCKPMSEAGD 57



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>HPCG_ECOLI (P42270) 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-)|
           (OHED hydratase)
          Length = 264

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 157 YPAGVSLQDRSATQKSWVRAMAEKGRTRKEMRTG 56
           YP  ++++D  A Q+ WVR    +GRT K  + G
Sbjct: 31  YPE-ITIEDAYAVQREWVRLKIAEGRTLKGHKIG 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.124    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,160,055
Number of Sequences: 219361
Number of extensions: 280651
Number of successful extensions: 1004
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 80,573,946
effective HSP length: 38
effective length of database: 72,238,228
effective search space used: 1733717472
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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