>PSBP_WHEAT (Q00434) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 258

 Score =  127 bits (319), Expect = 7e-30
 Identities = 66/101 (65%), Positives = 66/101 (65%)
 Frame = +2

Query: 38  MASTSCFLHQSTXXXXXXXXXXXXVGRTQLFVCKAHKNDEAASDAAVVTSRRXXXXXXXX 217
           MASTSCFLHQST            VGRTQLFVCKA KNDEAASDAAVVTSRR        
Sbjct: 1   MASTSCFLHQSTARLAASARPAPAVGRTQLFVCKAQKNDEAASDAAVVTSRRAALSLLAG 60

Query: 218 XXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKL 340
                         YGEAANVFGKAKKNTDFVAYSGEGFKL
Sbjct: 61  AAAIAVKVSPAAAAYGEAANVFGKAKKNTDFVAYSGEGFKL 101

>PSBP_CUCSA (Q9SLQ8) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein) (OEC23)
          Length = 263

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 41/105 (39%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
 Frame = +2

Query: 38  MASTSCFLHQSTXXXXXXXXXXXXVGRT----QLFVCKAHKNDEAASDAAVVTSRRXXXX 205
           MASTSCFLH                       QL VC+A K   A  +   V SRR    
Sbjct: 1   MASTSCFLHHHALTAAARSSSSPRQAALPKSPQLLVCRAQKQQPAQEEEGGVVSRRLALT 60

Query: 206 XXXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKL 340
                             YGEAANVFGK K NTD++ YSG+GFKL
Sbjct: 61  VLIGAAALGSKVSPADAAYGEAANVFGKPKSNTDYLPYSGDGFKL 105

>PSBP1_TOBAC (Q7DM39) Oxygen-evolving enhancer protein 2-1, chloroplast|
           precursor (OEE2) (23 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 23 kDa subunit) (23 kDa
           thylakoid membrane)
          Length = 268

 Score = 70.9 bits (172), Expect = 8e-13
 Identities = 41/110 (37%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
 Frame = +2

Query: 38  MASTSCFLHQSTXXXXXXXXXXXXVGRTQL-------FVCKAHKNDEAASDA--AVVTSR 190
           MAST CFLHQ                +  +        VC+A K      D   +VV SR
Sbjct: 1   MASTQCFLHQHALSSSAARTTSSVSSQRYVSSLKPNQLVCRAQKQSSPQEDDGNSVVVSR 60

Query: 191 RXXXXXXXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKL 340
           R                      YGEAANVFGK K+NTDF+AY+G+GFKL
Sbjct: 61  RLALTVLIGAAAIGSKVSPADAAYGEAANVFGKPKENTDFLAYNGDGFKL 110

>PSBP_LYCES (P29795) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 258

 Score = 68.9 bits (167), Expect = 3e-12
 Identities = 41/101 (40%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
 Frame = +2

Query: 41  ASTSCFLHQ-STXXXXXXXXXXXXVGRTQLFVCKAHKNDEAASDAAVVTSRRXXXXXXXX 217
           AST CFLHQ                 +    +C+A K D+A S+AAV  SRR        
Sbjct: 3   ASTQCFLHQYHALRSSPARTSSVSSPKPNQLICRAQKQDDA-SNAAV--SRRLALTLLIG 59

Query: 218 XXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKL 340
                         YGEAANVFGK K+NTDF+ Y+G+GFKL
Sbjct: 60  TAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDGFKL 100

>PSBP_PEA (P16059) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 259

 Score = 68.9 bits (167), Expect = 3e-12
 Identities = 40/104 (38%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
 Frame = +2

Query: 38  MASTSCFLHQS---TXXXXXXXXXXXXVGRTQLFVCKAHKNDEAASDAAVVTSRRXXXXX 208
           MAST CFLH     T              +    VCKA K D+       V SRR     
Sbjct: 1   MASTQCFLHHQYAITTPTRTLSQRQVVTTKPNHIVCKAQKQDDVVD---AVVSRRLALSV 57

Query: 209 XXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKL 340
                            YGEAANVFGKAK NTD++ Y+G+GFKL
Sbjct: 58  LIGAAAVGSKVSPADAAYGEAANVFGKAKTNTDYLPYNGDGFKL 101

>PSBP_SPIOL (P12302) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 267

 Score = 67.4 bits (163), Expect = 8e-12
 Identities = 42/111 (37%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
 Frame = +2

Query: 38  MASTSCFLHQSTXXXXXXXXXXXXVGRTQL-------FVCKAHKNDEAASDAAVVTS--- 187
           MAST+CFLH                 R Q         VCKA K D+  ++A V+ S   
Sbjct: 1   MASTACFLHHHAAISSPAAGRGSAAQRYQAVSIKPNQIVCKAQKQDD--NEANVLNSGVS 58

Query: 188 RRXXXXXXXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKL 340
           RR                      YGEAANVFGK KKNT+F+ Y+G+GFKL
Sbjct: 59  RRLALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKKNTEFMPYNGDGFKL 109

>PSBP_SOLTU (P93566) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 260

 Score = 67.4 bits (163), Expect = 8e-12
 Identities = 38/101 (37%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = +2

Query: 41  ASTSCFLHQSTXXXXXXXXXXXXVG-RTQLFVCKAHKNDEAASDAAVVTSRRXXXXXXXX 217
           AST CFLHQ                 +    +C+A K D+A + +  V SRR        
Sbjct: 3   ASTQCFLHQYHALRSSPARTSSVPSPKPNQLICRAQKQDDANNTSNAV-SRRLALTLLIG 61

Query: 218 XXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKL 340
                         YGEAANVFGK K+NTDF+ Y+G+GFKL
Sbjct: 62  TAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDGFKL 102

>PSBP_SINAL (P11594) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 260

 Score = 65.5 bits (158), Expect = 3e-11
 Identities = 38/105 (36%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
 Frame = +2

Query: 38  MASTSCFLHQSTXXXXXXXXXXXXVGRTQL----FVCKAHKNDEAASDAAVVTSRRXXXX 205
           MA ++CFLHQS               +  +     VCKA +  E  +      SRR    
Sbjct: 1   MAYSACFLHQSALASSTARSSPSSSSQRYVSISKLVCKAQQTHEEDNSTV---SRRLALT 57

Query: 206 XXXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKL 340
                             YGEAANVFGK KKNTDF AYSG+GF++
Sbjct: 58  LLVGAAAVGSKVSPADAAYGEAANVFGKPKKNTDFTAYSGDGFQV 102

>PSBP2_TOBAC (P18212) Oxygen-evolving enhancer protein 2-2, chloroplast|
           precursor (OEE2) (23 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 23 kDa subunit) (23 kDa
           thylakoid membrane)
          Length = 265

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 39/107 (36%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
 Frame = +2

Query: 38  MASTSCFLHQSTXXXXXXXXXXXXVGRT----QLFVCKAHKNDEAASDA--AVVTSRRXX 199
           MAST CFLH               +  +    QL VC+A K      D   +V  SRR  
Sbjct: 1   MASTQCFLHHHALSTPARTPLVRSIVPSLKPNQLLVCRAQKQSAPQEDNVNSVSVSRRLA 60

Query: 200 XXXXXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKL 340
                               YGEAANVFGK K +TDF  Y+G+GFKL
Sbjct: 61  LTVLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKL 107

>PSBP1_ARATH (Q42029) Oxygen-evolving enhancer protein 2-1, chloroplast|
           precursor (OEE2) (23 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 23 kDa subunit) (23 kDa
           thylakoid membrane protein)
          Length = 263

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 36/108 (33%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
 Frame = +2

Query: 38  MASTSCFLHQSTXXXXXXXXXXXXVGRTQL-------FVCKAHKNDEAASDAAVVTSRRX 196
           MA ++CFLHQS               +  +        +CKA ++ E  + A    SRR 
Sbjct: 1   MAYSACFLHQSALASSAARSSSSSSSQRHVSLSKPVQIICKAQQSHEDDNSAV---SRRL 57

Query: 197 XXXXXXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKL 340
                                YGEAANVFGK K NTDF+ Y+G+GFK+
Sbjct: 58  ALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYNGDGFKV 105

>PSBP_FRIAG (O49080) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 264

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
 Frame = +2

Query: 38  MASTSCFLHQ------STXXXXXXXXXXXXVGRTQLFVCKAHKNDEAASDAAVVTSRRXX 199
           MAS++CFL        +T            +  +QL +C+A K+ +   +++   SRR  
Sbjct: 1   MASSACFLLHHAPSTPATTSRTPSHRLVPTIKPSQL-ICRAQKSSDTDENSSTAVSRRLA 59

Query: 200 XXXXXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKL 340
                               YGEAANVFGKAK NTDF+ Y+G+GF L
Sbjct: 60  LTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNTDFLPYTGDGFNL 106

>PSBP3_TOBAC (Q04127) Oxygen-evolving enhancer protein 2-3, chloroplast|
           precursor (OEE2) (23 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 23 kDa subunit) (23 kDa
           thylakoid membrane)
          Length = 266

 Score = 62.0 bits (149), Expect = 4e-10
 Identities = 38/108 (35%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
 Frame = +2

Query: 38  MASTSCFLHQSTXXXXXXXXXXXXV----GRTQLFVCKAHKNDEAASDA---AVVTSRRX 196
           MAST CFLH               +       QL VC+A     A       +V  SRR 
Sbjct: 1   MASTQCFLHHHALSTPARTSLVRGIVPSLKSNQLLVCRAQNKQSAPQQDNVNSVSVSRRL 60

Query: 197 XXXXXXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKL 340
                                YGEAANVFGK K +TDF  Y+G+GFKL
Sbjct: 61  ALTLLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKL 108

>PSBP2_ARATH (O49344) Oxygen-evolving enhancer protein 2-2, chloroplast|
           precursor (OEE2) (23 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 23 kDa subunit) (23 kDa
           thylakoid membrane protein)
          Length = 265

 Score = 57.8 bits (138), Expect = 7e-09
 Identities = 38/109 (34%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
 Frame = +2

Query: 38  MASTSCFLHQSTXXXXXXXXXXXX--------VGRTQLFVCKAHKNDEAASDAAVVTSRR 193
           MA +  FLHQS                     + R    VC+A ++ E  + A  V  R 
Sbjct: 1   MAYSPSFLHQSALASSAGRSSSSSSSSFRHVSLSRPVHLVCRAQQSQENNNSA--VFRRL 58

Query: 194 XXXXXXXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKL 340
                                 YGEAANVFGK KKNTDF+ Y+GEGFK+
Sbjct: 59  ALTLLVGAAAIGSKVSPAPXAAYGEAANVFGKPKKNTDFLPYTGEGFKI 107

>PSBP_NARPS (Q40407) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 265

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
 Frame = +2

Query: 38  MASTSCFLHQ-----STXXXXXXXXXXXXVGRTQLFVCKAHKND-EAASDAAVVTSRRXX 199
           MAST+CFLH      +T              + Q    +    + + A++   + SRR  
Sbjct: 1   MASTACFLHHHAPSPATSNLSRTRSATNRDEQQQEHSARLQSPEADCATENDALLSRRLA 60

Query: 200 XXXXXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKL 340
                               YGE+ANVFGK K NTDF   +G+GFK+
Sbjct: 61  LTILIGGAALGSRVSAADAAYGESANVFGKPKTNTDFQTVTGDGFKI 107

>PSBP_BRAJU (Q96334) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein) (Fragment)
          Length = 217

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/58 (39%), Positives = 27/58 (46%)
 Frame = +2

Query: 167 DAAVVTSRRXXXXXXXXXXXXXXXXXXXXXXYGEAANVFGKAKKNTDFVAYSGEGFKL 340
           D     SRR                      YGEAANVFGK K NTDF A +G+GF++
Sbjct: 2   DDTSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFTAINGDGFQV 59

>PSBP_CHLRE (P11471) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2)
          Length = 245

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +2

Query: 260 YGEAANVFGKAKKNTDFVAYSGEGFKL 340
           YG++ANVFGK    + FV Y+G+GF L
Sbjct: 59  YGDSANVFGKVTNKSGFVPYAGDGFAL 85

>PSBP_EUGGR (P83687) Oxygen-evolving enhancer protein 2 (OEE2) (23 kDa subunit|
           of oxygen evolving system of photosystem II) (OEC 23 kDa
           subunit) (23 kDa thylakoid membrane protein) (Fragment)
          Length = 30

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 260 YGEAANVFGKAKKNTDFVAYSGEGF 334
           YGE ANVFGK K+   F   SG+G+
Sbjct: 2   YGEGANVFGKRKETDQFFEISGDGW 26

>TERT_HUMAN (O14746) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase|
           catalytic subunit) (HEST2) (Telomerase-associated
           protein 2) (TP2)
          Length = 1132

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
 Frame = -1

Query: 158 PRHSCAPCRRTAGCARR-----REQGAPR---QPGARWTGGGSRRWTPL 36
           P H+  P RR  GC R      RE G P     PGAR  GG + R  PL
Sbjct: 187 PPHASGP-RRRLGCERAWNHSVREAGVPLGLPAPGARRRGGSASRSLPL 234

>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 550

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -1

Query: 98  GAPRQPGARWTGGGSRR 48
           GAPR PG R  GGG+RR
Sbjct: 525 GAPRGPGGRPPGGGNRR 541

>ZO1_MOUSE (P39447) Tight junction protein ZO-1 (Zonula occludens 1 protein)|
            (Zona occludens 1 protein) (Tight junction protein 1)
          Length = 1745

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 58   PPPVHRA-PGCLGAPCSRRRAHPAVRLQG 141
            PP  H + PGCLGAP S   AH  +R +G
Sbjct: 963  PPTSHASQPGCLGAP-SAEAAHVGLRGEG 990

>RL3_ANASP (Q8YPH9) 50S ribosomal protein L3|
          Length = 211

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 70  HRAPGCLGAPCSRRRAHPAVRLQG 141
           HRAPG +GA  +  R +P  R+ G
Sbjct: 140 HRAPGSIGAGTTPGRVYPGKRMAG 163


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,709,682
Number of Sequences: 219361
Number of extensions: 425726
Number of successful extensions: 1342
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)