ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet97d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransgly... 400 e-109
2emb|AJ295943.1|FPR295943 Festuca pratensis mRNA for Xet1 protein 133 3e-28
3gb|AY105365.1| Zea mays PCO092487 mRNA sequence 84 2e-13
4gb|U15964.1|ZMU15964 Zea mays xyloglucan endo-transglycosylase h... 84 2e-13
5gb|U15781.1|ZMU15781 Zea mays xyloglucan endo-transglycosylase h... 84 2e-13
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 70 3e-09
7dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic D... 70 3e-09
8dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic D... 70 3e-09
9dbj|AK105934.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 3e-09
10dbj|AB196977.1| Sagittaria pygmaea SpXTH4 mRNA for xyloglucan en... 62 8e-07
11dbj|AK120345.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.046
12dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.046
13ref|XM_479512.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.8
14ref|XM_507412.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 2.8
15ref|XM_506566.2| PREDICTED Oryza sativa (japonica cultivar-group... 40 2.8
16gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 2.8
17gb|AE009201.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 2.8
18emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 2.8
19emb|X66125.1|OSPER O.sativa mRNA for peroxidase 40 2.8
20emb|AJ421977.1|SMA421977 Stenotrophomonas maltophilia partial pa... 40 2.8
21emb|AJ421975.1|SMA421975 Stenotrophomonas maltophilia partial pa... 40 2.8
22emb|AJ421974.1|SMA421974 Stenotrophomonas maltophilia partial pa... 40 2.8
23emb|AJ421973.1|SMA421973 Stenotrophomonas maltophilia partial pa... 40 2.8
24gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 2.8
25gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 2.8
26gb|AE012271.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 2.8
27gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 2.8
28gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 2.8
29gb|AF232237.1|AF232237 Agrobacterium tumefaciens SAICAR syntheta... 40 2.8
30dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
31dbj|AP003817.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
32dbj|AK104710.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
33dbj|AK099382.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
34dbj|AK073202.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
35emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 2.8
36tpe|BN000640.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 40 2.8
37gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 2.8
38gb|AF014467.1|AF014467 Oryza sativa peroxidase (POX22.3) mRNA, c... 40 2.8
39emb|CT009699.13| Mouse DNA sequence from clone RP23-119C14 on ch... 40 2.8
40gb|AC159884.2| Mus musculus BAC clone RP24-416O24 from chromosom... 40 2.8 
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
           (XEA)
          Length = 1174

 Score =  400 bits (202), Expect = e-109
 Identities = 202/202 (100%)
 Strand = Plus / Plus

                                                                       
Query: 20  tccagcattctcagaccgagtgagcctacttttgggagcacgcaacgcatggctcgcatg 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tccagcattctcagaccgagtgagcctacttttgggagcacgcaacgcatggctcgcatg 60

                                                                       
Query: 80  ggggcgtcggtgctttcgatcctgctcgcctcttgcgccctggcggcggcgagcttcgac 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ggggcgtcggtgctttcgatcctgctcgcctcttgcgccctggcggcggcgagcttcgac 120

                                                                       
Query: 140 aaggagttcgacgttacctggggtgacgggcgcggcaagatcctcaacaacggccagctc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaggagttcgacgttacctggggtgacgggcgcggcaagatcctcaacaacggccagctc 180

                                 
Query: 200 ctgacgctgggactggacaagg 221
           ||||||||||||||||||||||
Sbjct: 181 ctgacgctgggactggacaagg 202
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>emb|AJ295943.1|FPR295943 Festuca pratensis mRNA for Xet1 protein
          Length = 1187

 Score =  133 bits (67), Expect = 3e-28
 Identities = 135/157 (85%), Gaps = 3/157 (1%)
 Strand = Plus / Plus

                                                                       
Query: 67  catggctcgcatgggggcgtcggtgctttcgatcctgctcgcctcttgcgccct---ggc 123
           |||||||||||||| || |||||||||  |||||||||| || ||||| ||| |   |||
Sbjct: 123 catggctcgcatggcggtgtcggtgctggcgatcctgctggcgtcttgtgccgttgcggc 182

                                                                       
Query: 124 ggcggcgagcttcgacaaggagttcgacgttacctggggtgacgggcgcggcaagatcct 183
           |||||||||||||||||||||||||||| | || ||||| ||||| || || ||||||||
Sbjct: 183 ggcggcgagcttcgacaaggagttcgacatcacgtggggcgacggccgtggaaagatcct 242

                                                
Query: 184 caacaacggccagctcctgacgctgggactggacaag 220
           |||||| || ||||||||||| ||||| |||||||||
Sbjct: 243 caacaatgggcagctcctgaccctggggctggacaag 279
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>gb|AY105365.1| Zea mays PCO092487 mRNA sequence
          Length = 1253

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 51/54 (94%)
 Strand = Plus / Plus

                                                                 
Query: 155 acctggggtgacgggcgcggcaagatcctcaacaacggccagctcctgacgctg 208
           |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 204 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctg 257
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>gb|U15964.1|ZMU15964 Zea mays xyloglucan endo-transglycosylase homolog gene, complete
           cds
          Length = 1827

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 51/54 (94%)
 Strand = Plus / Plus

                                                                 
Query: 155 acctggggtgacgggcgcggcaagatcctcaacaacggccagctcctgacgctg 208
           |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 94  acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctg 147
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>gb|U15781.1|ZMU15781 Zea mays xyloglucan endo-transglycosylase homolog mRNA, complete
           cds
          Length = 1221

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 51/54 (94%)
 Strand = Plus / Plus

                                                                 
Query: 155 acctggggtgacgggcgcggcaagatcctcaacaacggccagctcctgacgctg 208
           |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctg 264
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                                   
Query: 158      tggggtgacgggcgcggcaagatcctcaacaacggccagctcctgacgctg 208
                ||||| ||||| |||||||||||||||  ||||||||||||||||||||||
Sbjct: 28761428 tggggcgacggccgcggcaagatcctcggcaacggccagctcctgacgctg 28761478



 Score = 46.1 bits (23), Expect = 0.046
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                            
Query: 141      aggagttcgacgttacctggggtgacgggcgcggcaagatcctcaacaacggccagctcc 200
                ||||||||||| | |||||||| || || || |||||||||||| |  | |||||||| |
Sbjct: 28774036 aggagttcgacatcacctggggcgatggccgtggcaagatcctcgaggatggccagctgc 28773977

                       
Query: 201      tgacgct 207
                |||||||
Sbjct: 28773976 tgacgct 28773970
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>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0028E05
          Length = 157631

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                                
Query: 158   tggggtgacgggcgcggcaagatcctcaacaacggccagctcctgacgctg 208
             ||||| ||||| |||||||||||||||  ||||||||||||||||||||||
Sbjct: 69203 tggggcgacggccgcggcaagatcctcggcaacggccagctcctgacgctg 69253



 Score = 46.1 bits (23), Expect = 0.046
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                         
Query: 141   aggagttcgacgttacctggggtgacgggcgcggcaagatcctcaacaacggccagctcc 200
             ||||||||||| | |||||||| || || || |||||||||||| |  | |||||||| |
Sbjct: 81811 aggagttcgacatcacctggggcgatggccgtggcaagatcctcgaggatggccagctgc 81752

                    
Query: 201   tgacgct 207
             |||||||
Sbjct: 81751 tgacgct 81745
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>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0622F03
          Length = 170064

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                                 
Query: 158    tggggtgacgggcgcggcaagatcctcaacaacggccagctcctgacgctg 208
              ||||| ||||| |||||||||||||||  ||||||||||||||||||||||
Sbjct: 161994 tggggcgacggccgcggcaagatcctcggcaacggccagctcctgacgctg 162044
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>dbj|AK105934.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-B05, full
           insert sequence
          Length = 1101

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                              
Query: 158 tggggtgacgggcgcggcaagatcctcaacaacggccagctcctgacgctg 208
           ||||| ||||| |||||||||||||||  ||||||||||||||||||||||
Sbjct: 194 tggggcgacggccgcggcaagatcctcggcaacggccagctcctgacgctg 244
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>dbj|AB196977.1| Sagittaria pygmaea SpXTH4 mRNA for xyloglucan
           endotransglucosylase/hydrolase, complete cds
          Length = 1181

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                       
Query: 131 agcttcgacaaggagttcgacgttacctggggtgacgggcgcggcaagatcctcaacaac 190
           |||||| |||| || |||||| | ||||||||||| || || || |||||||| ||||||
Sbjct: 316 agcttcaacaacgatttcgacatcacctggggtgatggccgggggaagatcctaaacaac 375

                      
Query: 191 ggccagctcct 201
           |||||||||||
Sbjct: 376 ggccagctcct 386
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>dbj|AK120345.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063H05, full
           insert sequence
          Length = 566

 Score = 46.1 bits (23), Expect = 0.046
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                       
Query: 141 aggagttcgacgttacctggggtgacgggcgcggcaagatcctcaacaacggccagctcc 200
           ||||||||||| | |||||||| || || || |||||||||||| |  | |||||||| |
Sbjct: 196 aggagttcgacatcacctggggcgatggccgtggcaagatcctcgaggatggccagctgc 255

                  
Query: 201 tgacgct 207
           |||||||
Sbjct: 256 tgacgct 262
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>dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F01, full
           insert sequence
          Length = 1253

 Score = 46.1 bits (23), Expect = 0.046
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                       
Query: 141 aggagttcgacgttacctggggtgacgggcgcggcaagatcctcaacaacggccagctcc 200
           ||||||||||| | |||||||| || || || |||||||||||| |  | |||||||| |
Sbjct: 186 aggagttcgacatcacctggggcgatggccgtggcaagatcctcgaggatggccagctgc 245

                  
Query: 201 tgacgct 207
           |||||||
Sbjct: 246 tgacgct 252
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>ref|XM_479512.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1287

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 70  ggctcgcatgggggcgtcggtgct 93
           ||||||||||||||||||| ||||
Sbjct: 230 ggctcgcatgggggcgtcgctgct 253
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>ref|XM_507412.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1167_G06.113
           mRNA
          Length = 1304

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 70  ggctcgcatgggggcgtcggtgct 93
           ||||||||||||||||||| ||||
Sbjct: 232 ggctcgcatgggggcgtcgctgct 255
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>ref|XM_506566.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1167_G06.113
           mRNA
          Length = 1291

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 70  ggctcgcatgggggcgtcggtgct 93
           ||||||||||||||||||| ||||
Sbjct: 234 ggctcgcatgggggcgtcgctgct 257
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 169    gcgcggcaagatcctcaaca 188
              ||||||||||||||||||||
Sbjct: 578416 gcgcggcaagatcctcaaca 578435
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>gb|AE009201.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 227
            of 256 of the complete sequence
          Length = 11399

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 126  cggcgagcttcgacaaggagttcg 149
            ||||||||||||||||||| ||||
Sbjct: 4271 cggcgagcttcgacaaggatttcg 4294
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 169     gcgcggcaagatcctcaaca 188
               ||||||||||||||||||||
Sbjct: 1970047 gcgcggcaagatcctcaaca 1970028
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>emb|X66125.1|OSPER O.sativa mRNA for peroxidase
          Length = 1287

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 70  ggctcgcatgggggcgtcggtgct 93
           ||||||||||||||||||| ||||
Sbjct: 183 ggctcgcatgggggcgtcgctgct 206
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>emb|AJ421977.1|SMA421977 Stenotrophomonas maltophilia partial parE gene for topoisomerase
           IV, strain sm199
          Length = 480

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 169 gcgcggcaagatcctcaaca 188
           ||||||||||||||||||||
Sbjct: 129 gcgcggcaagatcctcaaca 148
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>emb|AJ421975.1|SMA421975 Stenotrophomonas maltophilia partial parE gene for topoisomerase
           IV, strain sm8
          Length = 480

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 169 gcgcggcaagatcctcaaca 188
           ||||||||||||||||||||
Sbjct: 129 gcgcggcaagatcctcaaca 148
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>emb|AJ421974.1|SMA421974 Stenotrophomonas maltophilia partial parE gene for topoisomerase
           IV, strain sm117
          Length = 480

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 169 gcgcggcaagatcctcaaca 188
           ||||||||||||||||||||
Sbjct: 129 gcgcggcaagatcctcaaca 148
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>emb|AJ421973.1|SMA421973 Stenotrophomonas maltophilia partial parE gene for topoisomerase
           IV, strain sm98
          Length = 480

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 169 gcgcggcaagatcctcaaca 188
           ||||||||||||||||||||
Sbjct: 129 gcgcggcaagatcctcaaca 148
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 169    gcgcggcaagatcctcaaca 188
              ||||||||||||||||||||
Sbjct: 636185 gcgcggcaagatcctcaaca 636204
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    gcgcggcaagatcctcaaca 188
              ||||||||||||||||||||
Sbjct: 338395 gcgcggcaagatcctcaaca 338376
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>gb|AE012271.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 179
            of 460 of the complete genome
          Length = 10028

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 169  gcgcggcaagatcctcaaca 188
            ||||||||||||||||||||
Sbjct: 1720 gcgcggcaagatcctcaaca 1701
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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 126     cggcgagcttcgacaaggagttcg 149
               ||||||||||||||||||| ||||
Sbjct: 2519732 cggcgagcttcgacaaggatttcg 2519755
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 169     gcgcggcaagatcctcaaca 188
               ||||||||||||||||||||
Sbjct: 3067621 gcgcggcaagatcctcaaca 3067640
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>gb|AF232237.1|AF232237 Agrobacterium tumefaciens SAICAR synthetase (purC) gene, partial
           cds; and TetR family bacterial regulatory protein
           (ameR), membrane fusion protein (ameA), multidrug efflux
           transporter RND family protein (ameB), and outer
           membrane protein (ameC) genes, complete cds
          Length = 7277

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 126 cggcgagcttcgacaaggagttcg 149
           ||||||||||||||||||| ||||
Sbjct: 119 cggcgagcttcgacaaggatttcg 142
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 70       ggctcgcatgggggcgtcggtgct 93
                ||||||||||||||||||| ||||
Sbjct: 28620405 ggctcgcatgggggcgtcgctgct 28620428
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>dbj|AP003817.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1167_G06
          Length = 112386

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 70    ggctcgcatgggggcgtcggtgct 93
             ||||||||||||||||||| ||||
Sbjct: 86363 ggctcgcatgggggcgtcgctgct 86386
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>dbj|AK104710.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-F01, full
           insert sequence
          Length = 1287

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 70  ggctcgcatgggggcgtcggtgct 93
           ||||||||||||||||||| ||||
Sbjct: 230 ggctcgcatgggggcgtcgctgct 253
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>dbj|AK099382.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069K12, full
           insert sequence
          Length = 1290

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 70  ggctcgcatgggggcgtcggtgct 93
           ||||||||||||||||||| ||||
Sbjct: 233 ggctcgcatgggggcgtcgctgct 256
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>dbj|AK073202.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023C17, full
           insert sequence
          Length = 1303

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 70  ggctcgcatgggggcgtcggtgct 93
           ||||||||||||||||||| ||||
Sbjct: 231 ggctcgcatgggggcgtcgctgct 254
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 169     gcgcggcaagatcctcaaca 188
               ||||||||||||||||||||
Sbjct: 5273940 gcgcggcaagatcctcaaca 5273921
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>tpe|BN000640.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx111 gene
           for class III peroxidase 111 precursor, exons 1-4
          Length = 1250

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 70  ggctcgcatgggggcgtcggtgct 93
           ||||||||||||||||||| ||||
Sbjct: 162 ggctcgcatgggggcgtcgctgct 185
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 169     gcgcggcaagatcctcaaca 188
               ||||||||||||||||||||
Sbjct: 5587812 gcgcggcaagatcctcaaca 5587793
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>gb|AF014467.1|AF014467 Oryza sativa peroxidase (POX22.3) mRNA, complete cds
          Length = 1306

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 70  ggctcgcatgggggcgtcggtgct 93
           ||||||||||||||||||| ||||
Sbjct: 205 ggctcgcatgggggcgtcgctgct 228
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>emb|CT009699.13| Mouse DNA sequence from clone RP23-119C14 on chromosome 9, complete
             sequence
          Length = 192913

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    ccatccagcattctcagacc 36
             ||||||||||||||||||||
Sbjct: 68495 ccatccagcattctcagacc 68514
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>gb|AC159884.2| Mus musculus BAC clone RP24-416O24 from chromosome 9, complete sequence
          Length = 219361

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    ccatccagcattctcagacc 36
             ||||||||||||||||||||
Sbjct: 56171 ccatccagcattctcagacc 56190


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,522,268
Number of Sequences: 3902068
Number of extensions: 1522268
Number of successful extensions: 94518
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93699
Number of HSP's gapped (non-prelim): 818
length of query: 221
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 199
effective length of database: 17,147,199,772
effective search space: 3412292754628
effective search space used: 3412292754628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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