ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet97d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WRK54_ARATH (Q93WU8) Probable WRKY transcription factor 54 (WRKY... 29 5.9
2SCW4_YEAST (P53334) Probable family 17 glucosidase SCW4 precurso... 29 5.9

>WRK54_ARATH (Q93WU8) Probable WRKY transcription factor 54 (WRKY DNA-binding|
           protein 54)
          Length = 346

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 137 QVVDDLAKGQEFATQLQGLL 196
           +VVD L +G EFATQLQ LL
Sbjct: 14  KVVDQLVEGYEFATQLQLLL 33



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>SCW4_YEAST (P53334) Probable family 17 glucosidase SCW4 precursor (EC 3.2.1.-)|
           (Soluble cell wall protein 4)
          Length = 386

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = -1

Query: 183 SCVANSCPLARSSTTCSYGAMAIDRSKHEHVNS------SSLLLHLARTAQHSTAPQSSK 22
           + V NS P A +STT S  ++A   +     NS      S      A + Q S++ Q+S 
Sbjct: 59  NAVVNSAPAAATSTTSSAASVATAAASSSENNSQVSAAASPASSSAATSTQSSSSSQASS 118

Query: 21  ARAEGE 4
           + + GE
Sbjct: 119 SSSSGE 124


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,022,885
Number of Sequences: 219361
Number of extensions: 380625
Number of successful extensions: 1737
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1737
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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