>RXRB_CANFA (Q5TJF7) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)|
          Length = 533

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 24/65 (36%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
 Frame = +3

Query: 162 RPPLAPT-HVRGACAPKGP-----CHGLSRSGR----CDPEAAAKLTQVTSYDEPKEPCP 311
           RPP  P  H  G C P G      C   SR  R     DP AAA         +  EP P
Sbjct: 6   RPPFLPQRHAAGQCGPVGVRKEMHCGVASRWRRRRPWLDPAAAAAAAAAAGEQQTPEPEP 65

Query: 312 GVGGR 326
           G  GR
Sbjct: 66  GEAGR 70

>RXRB_HUMAN (P28702) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)|
          Length = 533

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 24/65 (36%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
 Frame = +3

Query: 162 RPPLAPT-HVRGACAPKGP-----CHGLSRSGR----CDPEAAAKLTQVTSYDEPKEPCP 311
           RPP  P  H  G C P G      C   SR  R     DP AAA         +  EP P
Sbjct: 6   RPPFLPQRHAAGQCGPVGVRKEMHCGVASRWRRRRPWLDPAAAAAAAVAGGEQQTPEPEP 65

Query: 312 GVGGR 326
           G  GR
Sbjct: 66  GEAGR 70

>BETA_RHILO (Q985M5) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)|
          Length = 550

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 221 MARALGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAP 87
           + R + G SA +  RG+  +  SH   D DL+ F  + A  ++ P
Sbjct: 423 LTREIFGQSAFDAFRGQEISPGSHVQSDDDLDVFIRDHAESAYHP 467

>INP5E_HUMAN (Q9NRR6) 72 kDa inositol polyphosphate 5-phosphatase (EC 3.1.3.36)|
           (Phosphatidylinositol-4,5-bisphosphate 5-phosphatase)
           (Phosphatidylinositol polyphosphate 5-phosphatase type
           IV)
          Length = 644

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 118 LNASKSESKLACDACARRSPRPTLGALAPPRAR 216
           L   +  S LACD C+ RS + +   LAP R++
Sbjct: 234 LGPGRPRSPLACDDCSLRSAKSSFSLLAPIRSK 266

>ODFP_RAT (P21769) Outer dense fiber protein (Protein RT7) (RTS 5/1)|
          Length = 245

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 168 PLAPTHVRGACAPKGPCHGLSRSGRCDP 251
           P +P    G C P GPC      G CDP
Sbjct: 200 PCSPCSPCGPCGPCGPCGPCGPCGPCDP 227

>PRGR_MOUSE (Q00175) Progesterone receptor (PR)|
          Length = 923

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -2

Query: 218 ARALGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAPLAFQPSAMTNCVNQR 42
           A   GG S+  V      A +S ++L+  L      P  GSFAPL  +P A  +C+  R
Sbjct: 432 AAVAGGPSSAAVSP----ASSSGSALECILYKAEAPPTQGSFAPLPCKPPAAASCLLPR 486

>PTH_NANEQ (P61235) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)|
          Length = 115

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = -2

Query: 188 NVGRGERRAQASHASLDSDLEAFSHN 111
           ++G+G+  AQ +HASLD+ L+ + +N
Sbjct: 12  DIGKGKLCAQVAHASLDAALKVYRNN 37

>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein|
          Length = 1509

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = -3

Query: 313  PGHGSLGSS*LVTCVSFAAASGSHRPDRLSPWHGPLGAQAPLTWVGAS 170
            PGHG L SS        +     H P +L   HG  G    +TW  AS
Sbjct: 1171 PGHGPLSSS----APGASTQPPPHLPTKLVIRHGGAGGSPSVTWARAS 1214

>IL17C_HUMAN (Q9P0M4) Interleukin-17C precursor (IL-17C) (Cytokine CX2)|
          Length = 197

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = -2

Query: 209 LGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAPLAFQPSAMTNC 54
           LG A    + RG +  QA   +L S LEA SH   H        +PSA T C
Sbjct: 44  LGQAPPHLLARGAKWGQALPVALVSSLEAASHRGRHE-------RPSATTQC 88

>GOG8A_HUMAN (Q9NZW0) Golgin subfamily A member 8A/B (Golgi autoantigen|
           golgin-67) (88 kDa Golgi protein) (Gm88 autoantigen)
          Length = 460

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -2

Query: 248 ITSAGPT*PMARALGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAPLAFQPS 69
           +T  G +   A   GG      G+G    +A+ A+ D      S+N  HG F   A  P+
Sbjct: 314 LTEPGDSAKDASPGGGHHQAGPGQGGEEGEAAGAAGDGVAACGSYNEGHGKFLAAAQNPA 373

Query: 68  A 66
           A
Sbjct: 374 A 374

>RXRB_MOUSE (P28704) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)|
           (MHC class I regulatory element-binding protein
           H-2RIIBP)
          Length = 520

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 25/65 (38%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
 Frame = +3

Query: 162 RPP-LAPTHVRGACAPKG-----PCHGLSRSGR----CDPEAAAKLTQVTSYDEPKEPCP 311
           RPP L P H  G C P G      C   SR  R     DP AAA         +  EP P
Sbjct: 6   RPPFLPPRHAAGQCGPVGVRKEMHCGVASRWRRRRPWLDPAAAA---AAAGEQQALEPEP 62

Query: 312 GVGGR 326
           G  GR
Sbjct: 63  GEAGR 67

>IBP3_PIG (P16611) Insulin-like growth factor-binding protein 3 precursor|
           (IGFBP-3) (IBP-3) (IGF-binding protein 3)
          Length = 293

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 25/92 (27%), Positives = 34/92 (36%)
 Frame = +3

Query: 45  LIHTIGHRAWLKSQWREATVCRIMTERL*VRIQASMRRLRPPLAPTHVRGACAPKGPCHG 224
           L+   G    L    RE   C + TER      A +R   PP  P  ++     +G C  
Sbjct: 63  LVREPGCGCCLTCALREGQACGVYTERC----GAGLRCQPPPGEPRPLQALLDGRGICAN 118

Query: 225 LSRSGRCDPEAAAKLTQVTSYDEPKEPCPGVG 320
            S +GR           + +Y  P  P PG G
Sbjct: 119 ASAAGR-----------LRAYLLPAPPAPGNG 139

>CLCB_ARATH (P92942) Chloride channel protein CLC-b (AtCLC-b)|
          Length = 780

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 266 LCCCFWITSAGPT*PMARA-LGGASAPNV 183
           LC CF  T+AGP  P  +A L G   PN+
Sbjct: 148 LCVCFAPTAAGPGIPEIKAYLNGVDTPNM 176

>XYLD_RHILO (Q98D10) Putative D-xylulose reductase (EC 1.1.1.9) (Xylitol|
           dehydrogenase) (XDH)
          Length = 348

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 146 SLDSDLEAFSHNPAHGSFAPLAFQPSAMT 60
           ++D D+  ++  P HG  AP A  P+A T
Sbjct: 105 NVDPDVSFWATPPVHGVLAPYAVHPAAFT 133

>TRMD_RHIME (Q92L41) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)|
           (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
          Length = 240

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 36  EEPLIHTIGHRAWLKSQWREATVCRIMTERL*VRIQASMRRLRPPLAP 179
           E P + T G+ A + +QWREAT  R+  ER    ++ +    R P  P
Sbjct: 191 EIPAVLTSGNHAAV-AQWREATARRLTAERRPDLLERARHPKRDPPQP 237


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,566,999
Number of Sequences: 219361
Number of extensions: 820098
Number of successful extensions: 2629
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2610
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)