ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet97c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CP007_MOUSE (Q8C190) Protein C16orf7 homolog (5-day ovary-specif... 31 0.70
2MA2B1_CAVPO (Q8VHC8) Lysosomal alpha-mannosidase precursor (EC 3... 30 2.0
3GHRL_CARAU (Q8AUU1) Ghrelin precursor [Contains: Ghrelin-12; Ghr... 28 4.5
4T2E7_ECOLI (P50194) Type II restriction enzyme Eco47I (EC 3.1.21... 28 4.5
5TPO_CANFA (P42705) Thrombopoietin precursor (Megakaryocyte colon... 28 5.9
6Y638_HAEIN (P44796) UPF0274 protein HI0638 28 7.7

>CP007_MOUSE (Q8C190) Protein C16orf7 homolog (5-day ovary-specific transcript 1|
           protein)
          Length = 649

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = -2

Query: 240 PTVPALPSSPLCISIHRRACTVQ----CKLLPPE 151
           P VPA P +PL  S HRR C+ +       LPPE
Sbjct: 96  PAVPAAPPTPLPTSRHRRVCSDEGGKLSPFLPPE 129



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>MA2B1_CAVPO (Q8VHC8) Lysosomal alpha-mannosidase precursor (EC 3.2.1.24)|
           (Mannosidase, alpha B) (Lysosomal acid
           alpha-mannosidase) (Laman) (Mannosidase alpha class 2B
           member 1)
          Length = 1007

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 275 SIYNTKRIPPSTP--RSQHSHPLLCASLYIVEHVQYSASSYHPSQYPVSRLSPL 120
           S+Y+  R+    P  RSQHS P   +S  +    +Y  +S+HP    +S +  L
Sbjct: 570 SVYSVTRVSDQNPQTRSQHSRPQKYSSPVLSIKNEYLRASFHPDTGLLSMIEVL 623



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>GHRL_CARAU (Q8AUU1) Ghrelin precursor [Contains: Ghrelin-12; Ghrelin-19]|
          Length = 103

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -3

Query: 248 PSTPRSQHSHPLLCASLYIVEHVQYSASSYHPSQYPVSRLSP 123
           P   R+ H   LLCA    VE V+   S   P+Q P  R  P
Sbjct: 2   PLRRRASHMFVLLCALSLCVESVKGGTSFLSPAQKPQGRRPP 43



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>T2E7_ECOLI (P50194) Type II restriction enzyme Eco47I (EC 3.1.21.4)|
           (Endonuclease Eco47I) (R.Eco47I)
          Length = 230

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 16/71 (22%), Positives = 32/71 (45%)
 Frame = -3

Query: 296 NEIKFIVSIYNTKRIPPSTPRSQHSHPLLCASLYIVEHVQYSASSYHPSQYPVSRLSPLL 117
           ++ KF++   +      S PRS+     +       EH++Y A S+H S+ P     P  
Sbjct: 28  SKFKFLIKFLSQFPEACSKPRSKKMQNKVGQE----EHIEYLARSFHESRLPRKPTPPTT 83

Query: 116 FAECIIKYIIN 84
             + ++  ++N
Sbjct: 84  VPDEVVSIVLN 94



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>TPO_CANFA (P42705) Thrombopoietin precursor (Megakaryocyte colony-stimulating|
           factor) (C-MPL ligand) (ML) (Megakaryocyte growth and
           development factor) (MGDF)
          Length = 352

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -3

Query: 293 EIKFIVSIYNTKRIPPSTPRSQHSHPLLCASLYIVEHVQYSASSYHPSQYPVS 135
           E+  +V +  T R+ P  P      P L   +    HV +S  S  P  YP+S
Sbjct: 5   ELLLVVMLLLTARLDPCLPAPPACDPRLLNKMLRDSHVLHSRLSQCPDIYPLS 57



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>Y638_HAEIN (P44796) UPF0274 protein HI0638|
          Length = 205

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 100 IIHSANNKGDRRLTGYWL 153
           +IH  N +GD+ LT YWL
Sbjct: 68  LIHQLNAQGDQNLTRYWL 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,156,322
Number of Sequences: 219361
Number of extensions: 965221
Number of successful extensions: 2741
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2741
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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