ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet97c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_189076.2| Oryza sativa (japonica cultivar-group), mRNA 127 2e-26
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 127 2e-26
3gb|AF435645.2| Oryza sativa CSLF6 mRNA, partial cds 127 2e-26
4dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic D... 127 2e-26
5dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic D... 127 2e-26
6dbj|AK065259.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 2e-26
7emb|CR376756.10| Zebrafish DNA sequence from clone CH211-87A15 i... 46 0.065
8emb|CR318635.8| Zebrafish DNA sequence from clone CH211-253D2 in... 46 0.065
9gb|AY105724.1| Zea mays PCO149105 mRNA sequence 46 0.065
10gb|AC121564.4| Mus musculus BAC clone RP23-214I6 from 5, complet... 42 1.0
11gb|AC124314.7| Mus musculus chromosome 10, clone RP23-193B6, com... 42 1.0
12emb|AL391058.25| Human DNA sequence from clone RP11-512F24 on ch... 42 1.0
13gb|AC160998.4| Mus musculus BAC clone RP23-78N12 from chromosome... 42 1.0
14gb|AC155297.2| Mus musculus BAC clone RP24-238D1 from chromosome... 42 1.0
15dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
16emb|BX323804.9| Zebrafish DNA sequence from clone DKEY-270K22 in... 42 1.0
17gb|AE013218.1| Buchnera aphidicola str. Sg (Schizaphis graminum)... 42 1.0
18dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
19dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
20emb|CR450781.12| Zebrafish DNA sequence from clone DKEY-20O6 in ... 42 1.0
21gb|AC150800.3| Medicago truncatula chromosome 7 BAC clone mth2-7... 40 4.0
22gb|BT018785.1| Zea mays clone EL01N0527F04.d mRNA sequence 40 4.0
23gb|AC102784.8| Mus musculus chromosome 1, clone RP23-408B17, com... 40 4.0
24gb|AC146915.2| Oryza sativa chromosome 3 B1166C06 genomic seque... 40 4.0
25gb|AC103551.7| Oryza sativa chromosome 3 BAC OSJNBb0058G04 genom... 40 4.0
26gb|AC146127.4| Pan troglodytes BAC clone RP43-23F10 from 7, comp... 40 4.0
27gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.0
28gb|AC005682.2| Homo sapiens BAC clone RP11-84K19 from 7, complet... 40 4.0
29gb|AC125229.3| Mus musculus BAC clone RP23-45P1 from 5, complete... 40 4.0
30emb|AL731585.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 4.0
31gb|AC146483.2| Pan troglodytes BAC clone RP43-30K12 from 7, comp... 40 4.0
32ref|XM_736263.1| Plasmodium chabaudi chabaudi CIR protein (PC200... 40 4.0
33ref|XM_739157.1| Plasmodium chabaudi chabaudi CIR protein (PC500... 40 4.0
34gb|AC140916.17| Medicago truncatula clone mth2-12b2, complete se... 40 4.0
35emb|AL359736.19| Human DNA sequence from clone RP11-307N16 on ch... 40 4.0
36emb|AL139117.11| Human DNA sequence from clone RP1-52N12 on chro... 40 4.0
37gb|AC098591.4| Homo sapiens BAC clone RP11-333E13 from 4, comple... 40 4.0
38emb|AL606601.3|OSJN00029 Oryza sativa genomic DNA, chromosome 4,... 40 4.0
39emb|AL591984.1| Listeria monocytogenes strain EGD, complete geno... 40 4.0
40emb|CR932960.3| Medicago truncatula chromosome 5 clone mth4-7a5,... 40 4.0
41emb|CR751236.6| Zebrafish DNA sequence from clone DKEY-27M6 in l... 40 4.0
42emb|CR861438.1| Pongo pygmaeus mRNA; cDNA DKFZp459K212 (from clo... 40 4.0
43emb|CR860731.1| Pongo pygmaeus mRNA; cDNA DKFZp459J0327 (from cl... 40 4.0
44emb|CR860453.1| Pongo pygmaeus mRNA; cDNA DKFZp459P201 (from clo... 40 4.0
45gb|AC025035.15| Homo sapiens 12 BAC RP11-121E16 (Roswell Park Ca... 40 4.0
46gb|AC115686.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.0
47gb|AC140068.18| Medicago truncatula clone mth2-15l24, complete s... 40 4.0
48gb|AC013287.11| Homo sapiens chromosome 10 clone RP11-76F14, com... 40 4.0
49gb|AC093328.3| Homo sapiens chromosome 8, clone RP11-30J20, comp... 40 4.0
50emb|BX890577.6| Zebrafish DNA sequence from clone CH211-95G8, co... 40 4.0
51dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
52dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
53dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
54dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
55gb|AC129572.6| Mus musculus chromosome 5, clone RP23-452L7, comp... 40 4.0
56gb|AC119147.3| Genomic sequence for Oryza sativa, Nipponbare str... 40 4.0
57emb|AL935276.16| Zebrafish DNA sequence from clone CH211-273J2, ... 40 4.0
58gb|AC133184.3| Mus musculus BAC clone RP24-186A17 from chromosom... 40 4.0
59dbj|AP004871.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
60dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome 40 4.0
61dbj|BS000084.1| Pan troglodytes chromosome 22 clone:RP43-100I03,... 40 4.0
62dbj|AK058877.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.0
63gb|AC006293.1|AC006293 Homo sapiens chromosome 19, cosmid F15658... 40 4.0
64emb|AL844568.13| Mouse DNA sequence from clone RP23-369H9 on chr... 40 4.0
65gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome 40 4.0
66gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.0
67emb|AL731633.2|OSJN00280 Oryza sativa genomic DNA, chromosome 4,... 40 4.0
68emb|AL845437.14| Zebrafish DNA sequence from clone DKEY-98J1 in ... 40 4.0 
>ref|NM_189076.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3707

 Score =  127 bits (64), Expect = 2e-26
 Identities = 77/80 (96%), Gaps = 1/80 (1%)
 Strand = Plus / Plus

                                                                        
Query: 17   tttctttttagttttgtccagaaaaaagatggtgttgatttgatttag-tttataattac 75
            |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||
Sbjct: 3409 tttctttttagttttgtccagaaaaaagatggtgtttatttgatttagttttttaattac 3468

                                
Query: 76   ctgtggtaattaattatgta 95
            ||||||||||||||||||||
Sbjct: 3469 ctgtggtaattaattatgta 3488



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                       
Query: 271  atggaaacaataaatttaatttcatta 297
            |||||||||||||||||||||||||||
Sbjct: 3679 atggaaacaataaatttaatttcatta 3705
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  127 bits (64), Expect = 2e-26
 Identities = 77/80 (96%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                           
Query: 17      tttctttttagttttgtccagaaaaaagatggtgttgatttgatttag-tttataattac 75
               |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||
Sbjct: 3538331 tttctttttagttttgtccagaaaaaagatggtgtttatttgatttagttttttaattac 3538272

                                   
Query: 76      ctgtggtaattaattatgta 95
               ||||||||||||||||||||
Sbjct: 3538271 ctgtggtaattaattatgta 3538252



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                          
Query: 271     atggaaacaataaatttaatttcatta 297
               |||||||||||||||||||||||||||
Sbjct: 3538061 atggaaacaataaatttaatttcatta 3538035
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>gb|AF435645.2| Oryza sativa CSLF6 mRNA, partial cds
          Length = 2135

 Score =  127 bits (64), Expect = 2e-26
 Identities = 77/80 (96%), Gaps = 1/80 (1%)
 Strand = Plus / Plus

                                                                        
Query: 17   tttctttttagttttgtccagaaaaaagatggtgttgatttgatttag-tttataattac 75
            |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||
Sbjct: 1795 tttctttttagttttgtccagaaaaaagatggtgtttatttgatttagttttttaattac 1854

                                
Query: 76   ctgtggtaattaattatgta 95
            ||||||||||||||||||||
Sbjct: 1855 ctgtggtaattaattatgta 1874



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                       
Query: 271  atggaaacaataaatttaatttcatta 297
            |||||||||||||||||||||||||||
Sbjct: 2065 atggaaacaataaatttaatttcatta 2091
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>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0577B11
          Length = 180355

 Score =  127 bits (64), Expect = 2e-26
 Identities = 77/80 (96%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                         
Query: 17    tttctttttagttttgtccagaaaaaagatggtgttgatttgatttag-tttataattac 75
             |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||
Sbjct: 16837 tttctttttagttttgtccagaaaaaagatggtgtttatttgatttagttttttaattac 16778

                                 
Query: 76    ctgtggtaattaattatgta 95
             ||||||||||||||||||||
Sbjct: 16777 ctgtggtaattaattatgta 16758



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                        
Query: 271   atggaaacaataaatttaatttcatta 297
             |||||||||||||||||||||||||||
Sbjct: 16567 atggaaacaataaatttaatttcatta 16541
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>dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0672D01
          Length = 146954

 Score =  127 bits (64), Expect = 2e-26
 Identities = 77/80 (96%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                         
Query: 17    tttctttttagttttgtccagaaaaaagatggtgttgatttgatttag-tttataattac 75
             |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||
Sbjct: 94048 tttctttttagttttgtccagaaaaaagatggtgtttatttgatttagttttttaattac 93989

                                 
Query: 76    ctgtggtaattaattatgta 95
             ||||||||||||||||||||
Sbjct: 93988 ctgtggtaattaattatgta 93969



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                        
Query: 271   atggaaacaataaatttaatttcatta 297
             |||||||||||||||||||||||||||
Sbjct: 93778 atggaaacaataaatttaatttcatta 93752
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>dbj|AK065259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J18, full
            insert sequence
          Length = 3707

 Score =  127 bits (64), Expect = 2e-26
 Identities = 77/80 (96%), Gaps = 1/80 (1%)
 Strand = Plus / Plus

                                                                        
Query: 17   tttctttttagttttgtccagaaaaaagatggtgttgatttgatttag-tttataattac 75
            |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||
Sbjct: 3409 tttctttttagttttgtccagaaaaaagatggtgtttatttgatttagttttttaattac 3468

                                
Query: 76   ctgtggtaattaattatgta 95
            ||||||||||||||||||||
Sbjct: 3469 ctgtggtaattaattatgta 3488



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                       
Query: 271  atggaaacaataaatttaatttcatta 297
            |||||||||||||||||||||||||||
Sbjct: 3679 atggaaacaataaatttaatttcatta 3705
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>emb|CR376756.10| Zebrafish DNA sequence from clone CH211-87A15 in linkage group 23,
              complete sequence
          Length = 203373

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 54     atttgatttagtttataattacc 76
              |||||||||||||||||||||||
Sbjct: 193431 atttgatttagtttataattacc 193409
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>emb|CR318635.8| Zebrafish DNA sequence from clone CH211-253D2 in linkage group 23,
             complete sequence
          Length = 154312

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 54    atttgatttagtttataattacc 76
             |||||||||||||||||||||||
Sbjct: 93673 atttgatttagtttataattacc 93695
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>gb|AY105724.1| Zea mays PCO149105 mRNA sequence
          Length = 1357

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 44/49 (89%), Gaps = 4/49 (8%)
 Strand = Plus / Plus

                                                             
Query: 22   ttttagttttgtccagaaa---aaagatggtgttgatttgatttagttt 67
            |||||||||||||||||||   |||| | ||||||||||||||||||||
Sbjct: 1254 ttttagttttgtccagaaatcgaaaggt-gtgttgatttgatttagttt 1301



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 78   gtggtaattaattatgtacttaattata 105
            ||||||||||||||||||| || |||||
Sbjct: 1320 gtggtaattaattatgtacgtacttata 1347
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>gb|AC121564.4| Mus musculus BAC clone RP23-214I6 from 5, complete sequence
          Length = 190110

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 208   cagaggagaggatgggagtgc 228
             |||||||||||||||||||||
Sbjct: 54746 cagaggagaggatgggagtgc 54766
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>gb|AC124314.7| Mus musculus chromosome 10, clone RP23-193B6, complete sequence
          Length = 232720

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 276   aacaataaatttaatttcatt 296
             |||||||||||||||||||||
Sbjct: 75711 aacaataaatttaatttcatt 75691
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>emb|AL391058.25| Human DNA sequence from clone RP11-512F24 on chromosome 1 Contains
            part of the gene for membrane-associated guanylate
            kinase-related 3 (MAGI-3) and a heterogeneous nuclear
            ribonucleoprotein A3 (hnRNPA3) pseudogene, complete
            sequence
          Length = 82483

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 81   gtaattaattatgtacttaattata 105
            ||||||||||||||| |||||||||
Sbjct: 6450 gtaattaattatgtaattaattata 6474



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 81   gtaattaattatgtacttaattat 104
            ||||||||||||||| ||||||||
Sbjct: 6438 gtaattaattatgtaattaattat 6461
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>gb|AC160998.4| Mus musculus BAC clone RP23-78N12 from chromosome 6, complete sequence
          Length = 279848

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 21     tttttagttttgtccagaaaaaaga 45
              ||||||||||||| |||||||||||
Sbjct: 223553 tttttagttttgtacagaaaaaaga 223577
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>gb|AC155297.2| Mus musculus BAC clone RP24-238D1 from chromosome 13, complete sequence
          Length = 174487

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 269    atatggaaacaataaatttaatttcatta 297
              |||||||||||| ||||||| ||||||||
Sbjct: 110981 atatggaaacaagaaatttattttcatta 110953
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 88      attatgtacttaattatacat 108
               |||||||||||||||||||||
Sbjct: 3215409 attatgtacttaattatacat 3215389
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>emb|BX323804.9| Zebrafish DNA sequence from clone DKEY-270K22 in linkage group 2,
             complete sequence
          Length = 121116

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 276   aacaataaatttaatttcatt 296
             |||||||||||||||||||||
Sbjct: 58563 aacaataaatttaatttcatt 58543
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>gb|AE013218.1| Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome
          Length = 641454

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 277    acaataaatttaatttcatta 297
              |||||||||||||||||||||
Sbjct: 311505 acaataaatttaatttcatta 311525
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>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0455F03
          Length = 158201

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 88     attatgtacttaattatacat 108
              |||||||||||||||||||||
Sbjct: 130399 attatgtacttaattatacat 130379
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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1714_H10
          Length = 191580

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 88    attatgtacttaattatacat 108
             |||||||||||||||||||||
Sbjct: 25102 attatgtacttaattatacat 25082
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>emb|CR450781.12| Zebrafish DNA sequence from clone DKEY-20O6 in linkage group 24,
             complete sequence
          Length = 215010

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 49    tgttgatttgatttagtttataatt 73
             ||||||||||||| |||||||||||
Sbjct: 27750 tgttgatttgattcagtttataatt 27726
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>gb|AC150800.3| Medicago truncatula chromosome 7 BAC clone mth2-77m9, complete sequence
          Length = 116865

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    tttgtccagaaaaaagatgg 48
             ||||||||||||||||||||
Sbjct: 24104 tttgtccagaaaaaagatgg 24123
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>gb|BT018785.1| Zea mays clone EL01N0527F04.d mRNA sequence
          Length = 1402

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 48   gtgttgatttgatttagttt 67
            ||||||||||||||||||||
Sbjct: 1206 gtgttgatttgatttagttt 1225
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>gb|AC102784.8| Mus musculus chromosome 1, clone RP23-408B17, complete sequence
          Length = 195644

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    gttttgtccagaaaaaagat 46
             ||||||||||||||||||||
Sbjct: 59754 gttttgtccagaaaaaagat 59735
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>gb|AC146915.2| Oryza sativa chromosome 3  B1166C06 genomic sequence, complete
            sequence
          Length = 36086

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 48   gtgttgatttgatttagttt 67
            ||||||||||||||||||||
Sbjct: 5892 gtgttgatttgatttagttt 5911
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>gb|AC103551.7| Oryza sativa chromosome 3 BAC OSJNBb0058G04 genomic sequence, complete
              sequence
          Length = 137709

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     gtgttgatttgatttagttt 67
              ||||||||||||||||||||
Sbjct: 131785 gtgttgatttgatttagttt 131804
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>gb|AC146127.4| Pan troglodytes BAC clone RP43-23F10 from 7, complete sequence
          Length = 190149

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    atgtacttaattatacattc 110
             ||||||||||||||||||||
Sbjct: 18533 atgtacttaattatacattc 18514
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 48       gtgttgatttgatttagttt 67
                ||||||||||||||||||||
Sbjct: 15205563 gtgttgatttgatttagttt 15205544
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>gb|AC005682.2| Homo sapiens BAC clone RP11-84K19 from 7, complete sequence
          Length = 162139

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     atgtacttaattatacattc 110
              ||||||||||||||||||||
Sbjct: 136359 atgtacttaattatacattc 136378
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>gb|AC125229.3| Mus musculus BAC clone RP23-45P1 from 5, complete sequence
          Length = 167771

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 223   gagtgctgggaccgtggggtggac 246
             ||||||||||||||||| ||||||
Sbjct: 58939 gagtgctgggaccgtggtgtggac 58916
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>emb|AL731585.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009K15,
              complete sequence
          Length = 185021

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     gtgttgatttgatttagttt 67
              ||||||||||||||||||||
Sbjct: 145043 gtgttgatttgatttagttt 145024
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>gb|AC146483.2| Pan troglodytes BAC clone RP43-30K12 from 7, complete sequence
          Length = 208066

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    atgtacttaattatacattc 110
             ||||||||||||||||||||
Sbjct: 82878 atgtacttaattatacattc 82859
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>ref|XM_736263.1| Plasmodium chabaudi chabaudi CIR protein (PC200045.00.0) partial
          mRNA
          Length = 714

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 54 atttgatttagtttataatt 73
          ||||||||||||||||||||
Sbjct: 59 atttgatttagtttataatt 40
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>ref|XM_739157.1| Plasmodium chabaudi chabaudi CIR protein (PC500018.00.0) partial mRNA
          Length = 1728

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 54   atttgatttagtttataatt 73
            ||||||||||||||||||||
Sbjct: 1073 atttgatttagtttataatt 1054
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>gb|AC140916.17| Medicago truncatula clone mth2-12b2, complete sequence
          Length = 133358

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   ttagttttgtccagaaaaaa 43
            ||||||||||||||||||||
Sbjct: 1314 ttagttttgtccagaaaaaa 1295
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>emb|AL359736.19| Human DNA sequence from clone RP11-307N16 on chromosome 13 Contains the
              gene for a novel protein (FLJ31208), three novel genes, a
              novel pseudogene and three CpG islands, complete sequence
          Length = 178850

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     tttagttttgtccagaaaaa 42
              ||||||||||||||||||||
Sbjct: 138809 tttagttttgtccagaaaaa 138828
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>emb|AL139117.11| Human DNA sequence from clone RP1-52N12 on chromosome 19, complete
              sequence
          Length = 148497

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     ttaattatgtacttaattat 104
              ||||||||||||||||||||
Sbjct: 135483 ttaattatgtacttaattat 135502
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>gb|AC098591.4| Homo sapiens BAC clone RP11-333E13 from 4, complete sequence
          Length = 179641

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 266    tatatatggaaacaataaatttaatttc 293
              ||||| |||||||||||| |||||||||
Sbjct: 162835 tatatttggaaacaataattttaatttc 162862
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>emb|AL606601.3|OSJN00029 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055H05,
             complete sequence
          Length = 152329

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   attcttttagtattatatat 272
             ||||||||||||||||||||
Sbjct: 31122 attcttttagtattatatat 31103
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>emb|AL591984.1| Listeria monocytogenes strain EGD, complete genome, segment 12/12
          Length = 225528

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     aagatggtgttgatttgatt 61
              ||||||||||||||||||||
Sbjct: 134196 aagatggtgttgatttgatt 134177
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>emb|CR932960.3| Medicago truncatula chromosome 5 clone mth4-7a5, COMPLETE SEQUENCE
          Length = 199033

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 266    tatatatggaaacaataaatttaa 289
              ||||||| ||||||||||||||||
Sbjct: 177319 tatatatagaaacaataaatttaa 177296
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>emb|CR751236.6| Zebrafish DNA sequence from clone DKEY-27M6 in linkage group 23, complete
              sequence
          Length = 108342

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     ttgatttgatttagtttata 70
              ||||||||||||||||||||
Sbjct: 107114 ttgatttgatttagtttata 107133
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>emb|CR861438.1| Pongo pygmaeus mRNA; cDNA DKFZp459K212 (from clone DKFZp459K212)
          Length = 4091

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 209  agaggagaggatgggagtgc 228
            ||||||||||||||||||||
Sbjct: 3259 agaggagaggatgggagtgc 3240
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>emb|CR860731.1| Pongo pygmaeus mRNA; cDNA DKFZp459J0327 (from clone DKFZp459J0327)
          Length = 4137

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 209  agaggagaggatgggagtgc 228
            ||||||||||||||||||||
Sbjct: 3300 agaggagaggatgggagtgc 3281
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>emb|CR860453.1| Pongo pygmaeus mRNA; cDNA DKFZp459P201 (from clone DKFZp459P201)
          Length = 4094

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 209  agaggagaggatgggagtgc 228
            ||||||||||||||||||||
Sbjct: 3260 agaggagaggatgggagtgc 3241
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>gb|AC025035.15| Homo sapiens 12 BAC RP11-121E16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 165440

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 272   tggaaacaataaatttaatttcat 295
             ||||||||| ||||||||||||||
Sbjct: 92422 tggaaacaaaaaatttaatttcat 92445
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>gb|AC115686.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJ1325D05,
              complete sequence
          Length = 169500

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 46     tggtgttgatttgatttagtttat 69
              ||||||||||||||||| ||||||
Sbjct: 160116 tggtgttgatttgattttgtttat 160093
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>gb|AC140068.18| Medicago truncatula clone mth2-15l24, complete sequence
          Length = 111620

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 266   tatatatggaaacaataaatttaa 289
             ||||||| ||||||||||||||||
Sbjct: 85185 tatatatagaaacaataaatttaa 85208
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>gb|AC013287.11| Homo sapiens chromosome 10 clone RP11-76F14, complete sequence
          Length = 174578

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 62    tagtttataattacctgtggtaat 85
             |||||||||||||| |||||||||
Sbjct: 21234 tagtttataattacatgtggtaat 21257
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>gb|AC093328.3| Homo sapiens chromosome 8, clone RP11-30J20, complete sequence
          Length = 163640

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 265   ttatatatggaaacaataaattta 288
             ||||||||||||| ||||||||||
Sbjct: 97586 ttatatatggaaaaaataaattta 97563
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>emb|BX890577.6| Zebrafish DNA sequence from clone CH211-95G8, complete sequence
          Length = 114934

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    aaaaaagatggtgttgattt 57
             ||||||||||||||||||||
Sbjct: 62727 aaaaaagatggtgttgattt 62708
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 46       tggtgttgatttgatttagtttat 69
                ||||||||||||||||| ||||||
Sbjct: 12664017 tggtgttgatttgattttgtttat 12664040



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 48       gtgttgatttgatttagttt 67
                ||||||||||||||||||||
Sbjct: 11822266 gtgttgatttgatttagttt 11822247



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 253     attcttttagtattatatat 272
               ||||||||||||||||||||
Sbjct: 7968998 attcttttagtattatatat 7968979
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 46      tggtgttgatttgatttagtttat 69
               ||||||||||||||||| ||||||
Sbjct: 9027318 tggtgttgatttgattttgtttat 9027341
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 48       gtgttgatttgatttagttt 67
                ||||||||||||||||||||
Sbjct: 15200097 gtgttgatttgatttagttt 15200078
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 46      tggtgttgatttgatttagtttat 69
               ||||||||||||||||| ||||||
Sbjct: 3082685 tggtgttgatttgattttgtttat 3082708
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>gb|AC129572.6| Mus musculus chromosome 5, clone RP23-452L7, complete sequence
          Length = 178011

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    gtaattaattatgtacttaa 100
             ||||||||||||||||||||
Sbjct: 68203 gtaattaattatgtacttaa 68222
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>gb|AC119147.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0027A14, from chromosome 10, complete sequence
          Length = 175667

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 46     tggtgttgatttgatttagtttat 69
              ||||||||||||||||| ||||||
Sbjct: 115541 tggtgttgatttgattttgtttat 115564
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>emb|AL935276.16| Zebrafish DNA sequence from clone CH211-273J2, complete sequence
          Length = 164481

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     tgttgatttgatttagttta 68
              ||||||||||||||||||||
Sbjct: 158786 tgttgatttgatttagttta 158767
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>gb|AC133184.3| Mus musculus BAC clone RP24-186A17 from chromosome 5, complete sequence
          Length = 169357

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 17     tttctttttagttttgtccagaaa 40
              |||||||||| |||||||||||||
Sbjct: 102551 tttctttttatttttgtccagaaa 102574
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>dbj|AP004871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419H03
          Length = 129020

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 46    tggtgttgatttgatttagtttat 69
             ||||||||||||||||| ||||||
Sbjct: 10839 tggtgttgatttgattttgtttat 10862
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>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome
          Length = 860631

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 45     atggtgttgatttgatttagttta 68
              |||||||| |||||||||||||||
Sbjct: 793162 atggtgttaatttgatttagttta 793185
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>dbj|BS000084.1| Pan troglodytes chromosome 22 clone:RP43-100I03, map 22, complete
             sequences
          Length = 154178

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   caataaatttaatttcatta 297
             ||||||||||||||||||||
Sbjct: 45614 caataaatttaatttcatta 45633
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>dbj|AK058877.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-H12, full
           insert sequence
          Length = 1110

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 46  tggtgttgatttgatttagtttat 69
           ||||||||||||||||| ||||||
Sbjct: 969 tggtgttgatttgattttgtttat 992
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>gb|AC006293.1|AC006293 Homo sapiens chromosome 19, cosmid F15658, complete sequence
          Length = 43527

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 85   ttaattatgtacttaattat 104
            ||||||||||||||||||||
Sbjct: 8484 ttaattatgtacttaattat 8503
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>emb|AL844568.13| Mouse DNA sequence from clone RP23-369H9 on chromosome 2, complete
              sequence
          Length = 140495

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     ttatgtacttaattatacat 108
              ||||||||||||||||||||
Sbjct: 124293 ttatgtacttaattatacat 124312
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>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 276    aacaataaatttaatttcat 295
              ||||||||||||||||||||
Sbjct: 589113 aacaataaatttaatttcat 589132
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 46      tggtgttgatttgatttagtttat 69
               ||||||||||||||||| ||||||
Sbjct: 9033747 tggtgttgatttgattttgtttat 9033770
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>emb|AL731633.2|OSJN00280 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0096E05,
             complete sequence
          Length = 129908

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 46    tggtgttgatttgatttagtttat 69
             ||||||||||||||||| ||||||
Sbjct: 79003 tggtgttgatttgattttgtttat 79026
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>emb|AL845437.14| Zebrafish DNA sequence from clone DKEY-98J1 in linkage group 23,
           complete sequence
          Length = 239084

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 51  ttgatttgatttagtttata 70
           ||||||||||||||||||||
Sbjct: 772 ttgatttgatttagtttata 791


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,017,002
Number of Sequences: 3902068
Number of extensions: 4017002
Number of successful extensions: 91951
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91476
Number of HSP's gapped (non-prelim): 469
length of query: 304
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 282
effective length of database: 17,147,199,772
effective search space: 4835510335704
effective search space used: 4835510335704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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