>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC|
           1.3.1.33) (PCR A) (NADPH-protochlorophyllide
           oxidoreductase A) (POR A)
          Length = 388

 Score = 85.1 bits (209), Expect = 4e-17
 Identities = 45/45 (100%), Positives = 45/45 (100%)
 Frame = +1

Query: 130 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQVATAPS 264
           TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQVATAPS
Sbjct: 9   TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQVATAPS 53

>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC|
           1.3.1.33) (PCR A) (NADPH-protochlorophyllide
           oxidoreductase A) (POR A)
          Length = 388

 Score = 83.6 bits (205), Expect = 1e-16
 Identities = 44/45 (97%), Positives = 44/45 (97%)
 Frame = +1

Query: 130 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQVATAPS 264
           TLSVPKKGSSMGA AVKDTAAFLGVSSKAKKASLAVRTQVATAPS
Sbjct: 9   TLSVPKKGSSMGAAAVKDTAAFLGVSSKAKKASLAVRTQVATAPS 53

>RPOA_ANAMM (Q5PA81) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 366

 Score = 32.0 bits (71), Expect = 0.43
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -1

Query: 188 AVSFTATAPMLLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELEL 39
           AVS       L  F+G+E VEG S + +D  E  L      L++ +ELEL
Sbjct: 243 AVSARVLQDQLQSFIGSEEVEGESRKKVDKEEGALPYDHNLLRKVDELEL 292

>ALGE_PSEAE (P18895) Alginate production protein algE precursor|
          Length = 490

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -1

Query: 116 WRAMDDGELGLSLASTALQEFNE---LELECTVLLYFTSGL 3
           WR  DD ++G S  + ALQ   +    EL+  V  YF  GL
Sbjct: 402 WRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQGL 442

>MUCDL_MOUSE (Q8VHF2) Mucin and cadherin-like protein precursor|
           (Mu-protocadherin)
          Length = 831

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -1

Query: 203 TPRNAAVSFTATAPMLLPFLGT-ERVEGRSWRAMDDGELGLSLASTALQEFNELELECTV 27
           TP+      TAT P+ LP  G  E+ +G+ +  +D   LG  L +  L     L L C V
Sbjct: 605 TPKPGTSQSTATGPISLPSTGAGEQGDGQRFSTVDMAVLGGVLGALLL-----LALICLV 659

Query: 26  LL 21
           +L
Sbjct: 660 IL 661


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.307    0.118    0.301 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,284,528
Number of Sequences: 219361
Number of extensions: 240453
Number of successful extensions: 671
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 80,573,946
effective HSP length: 64
effective length of database: 66,534,842
effective search space used: 1596836208
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)