ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baet97b12 |
|---|---|
| Clone Library Name | barley_pub |
>SYFA_CLOTE (Q891T7) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 339 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +1 Query: 109 LTKAFSGLGGLGVDERTMVAALAN 180 LTK G+GGL +ER +V LAN Sbjct: 39 LTKILRGMGGLSAEERPIVGKLAN 62
>BEM3_ASHGO (Q74ZH7) GTPase-activating protein BEM3| Length = 1013 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 338 IAHSTIRFLNRENSAARCSMYSSSHRSITPPCSLNSPGK 222 I+ S+ + N S A +Y +S SIT PC NS K Sbjct: 182 ISRSSSSYSNTLGSPATSVLYKNSRISITSPCKSNSTSK 220
>SYFA_MOOTA (Q2RHN7) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 340 Score = 28.9 bits (63), Expect = 3.1 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 11/90 (12%) Frame = +1 Query: 61 SLAILVRATMADEVQAL-----------TKAFSGLGGLGVDERTMVAALANWRKQPEKRS 207 +LA + AT ++E++AL T+ G+G L +ER V +AN Sbjct: 12 ALARVAAATSSEELEALRVRYLGKKGELTRVLRGMGKLPPEERPRVGQMAN--------- 62 Query: 208 GFRKSFPGLFKEHGGVMERCEDEYMLHLAA 297 R+ G KEH + R E L A Sbjct: 63 KVREELEGALKEHRENLSRREQAERLRAEA 92
>TACC2_HUMAN (O95359) Transforming acidic coiled-coil-containing protein 2 (Anti| Zuai-1) (AZU-1) Length = 1026 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/75 (25%), Positives = 32/75 (42%) Frame = +1 Query: 103 QALTKAFSGLGGLGVDERTMVAALANWRKQPEKRSGFRKSFPGLFKEHGGVMERCEDEYM 282 Q + + L L E+++ + K E GFRK+ V++RC EY+ Sbjct: 891 QLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEE--------VLKRCAQEYL 942 Query: 283 LHLAAEFSRFKNLMV 327 + E R++ L V Sbjct: 943 SRVKKEEQRYQALKV 957
>XERC_NEIMB (Q9JXV6) Tyrosine recombinase xerC| Length = 301 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = +1 Query: 85 TMADEVQALTKAFSGLGGLGVDERTMVAALANWRK 189 T D VQAL + L G G+ ERT+ L++WR+ Sbjct: 53 TRGDFVQALRR----LSGRGLGERTLARKLSSWRQ 83
>PENK_FELCA (Q28409) Proenkephalin A [Contains: Synenkephalin; Met-enkephalin;| Leu-enkephalin] (Fragment) Length = 187 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = +1 Query: 193 PEKRSGFRKSFPGLFKEHGGVMERCEDEY 279 PE+ RK + G K +GG M++ ++ Y Sbjct: 28 PEESHALRKKYGGFMKRYGGFMKKMDELY 56
>LIPA3_MOUSE (P60469) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type f| polypeptide-interacting protein alpha-3) (PTPRF-interacting protein alpha-3) Length = 1043 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +1 Query: 55 NLSLAILVRATMADEVQALTKAFSGLGGLGVDERTMVAALANWRKQPEKRSGFRK 219 +L+L + + A Q L K FS L LG D R + ++ + P R FR+ Sbjct: 931 DLALLLQIPTQNAQARQLLEKEFSNLISLGTDRRLDEDSAKSFSRSPSWRKMFRE 985
>LIPA3_HUMAN (O75145) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type f| polypeptide-interacting protein alpha-3) (PTPRF-interacting protein alpha-3) Length = 1194 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +1 Query: 55 NLSLAILVRATMADEVQALTKAFSGLGGLGVDERTMVAALANWRKQPEKRSGFRK 219 +L+L + + A Q L K FS L LG D R + ++ + P R FR+ Sbjct: 1082 DLALLLQIPTQNAQARQLLEKEFSNLISLGTDRRLDEDSAKSFSRSPSWRKMFRE 1136
>LIPA3_RAT (Q91Z79) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type f| polypeptide-interacting protein alpha-3) (PTPRF-interacting protein alpha-3) Length = 1192 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +1 Query: 55 NLSLAILVRATMADEVQALTKAFSGLGGLGVDERTMVAALANWRKQPEKRSGFRK 219 +L+L + + A Q L K FS L LG D R + ++ + P R FR+ Sbjct: 1080 DLALLLQIPTQNAQARQLLEKEFSNLISLGTDRRLDEDSAKSFSRSPSWRKMFRE 1134
>SYFA_GEOMG (Q39VS5) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 338 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +1 Query: 106 ALTKAFSGLGGLGVDERTMVAALAN 180 ALT GLG L +ER +V LAN Sbjct: 38 ALTAVMKGLGALSAEERPVVGQLAN 62
>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein homolog) Length = 247 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = +1 Query: 94 DEVQALTKAFSGLGGLGVDERTMVAALANWRKQPEKRSGFRKSFP 228 DEV +L +A + G L + +R++ +A RKQ + GFRK P Sbjct: 89 DEVDSLKEALTYDGAL-LGDRSLRVDIAEGRKQDKGGFGFRKGGP 132
>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein) Length = 247 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = +1 Query: 94 DEVQALTKAFSGLGGLGVDERTMVAALANWRKQPEKRSGFRKSFP 228 DEV +L +A + G L + +R++ +A RKQ + GFRK P Sbjct: 89 DEVDSLKEALTYDGAL-LGDRSLRVDIAEGRKQDKGGFGFRKGGP 132
>BCN1_ARATH (Q9M367) Beclin-1-like protein| Length = 443 Score = 27.7 bits (60), Expect = 6.8 Identities = 26/82 (31%), Positives = 33/82 (40%) Frame = +1 Query: 148 DERTMVAALANWRKQPEKRSGFRKSFPGLFKEHGGVMERCEDEYMLHLAAEFSRFKNLMV 327 +ER +VAA+ KQ + + K FK G ED Y + F N Sbjct: 227 EERKLVAAIEETEKQNAEVNHQLKELE--FK--GNRFNELEDRY-------WQEFNNFQF 275 Query: 328 LWAMHPWERDARLAHHVLHQAH 393 H ERDA LA + QAH Sbjct: 276 QLIAHQEERDAILAKIEVSQAH 297
>TACC2_MOUSE (Q9JJG0) Transforming acidic coiled-coil-containing protein 2| Length = 1035 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/75 (24%), Positives = 32/75 (42%) Frame = +1 Query: 103 QALTKAFSGLGGLGVDERTMVAALANWRKQPEKRSGFRKSFPGLFKEHGGVMERCEDEYM 282 Q + + L L E+++ + K E GFRK+ V+++C EY+ Sbjct: 900 QLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEE--------VLKKCAQEYL 951 Query: 283 LHLAAEFSRFKNLMV 327 + E R++ L V Sbjct: 952 SRVKKEEQRYQALKV 966
>CXS62_CONST (Q9XZL5) Omega-conotoxin SVIA mutant 2 precursor| Length = 72 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +2 Query: 260 SGARTSTCCTWPPSSPGSRT*WCCGRCTRG 349 S + +T C P SP T CCGRC+RG Sbjct: 41 SKSELTTRCR-PSGSPCGVTSICCGRCSRG 69
>CXO15_CONST (Q5K0D5) Conotoxin-15 precursor| Length = 72 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +2 Query: 260 SGARTSTCCTWPPSSPGSRT*WCCGRCTRG 349 S + +T C P SP T CCGRC+RG Sbjct: 41 SKSELTTRCR-PSGSPCGVTSICCGRCSRG 69
>TPIC_SECCE (P46225) Triosephosphate isomerase, chloroplast precursor (EC| 5.3.1.1) (TIM) (Triose-phosphate isomerase) Length = 298 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = -3 Query: 149 STPRPPRPEKALVSA*TSSAIVALTRIASERLIXXXXXXXGYTGRRVRC 3 ++P PPRP + TSSA A A++RL+ + G +C Sbjct: 11 ASPPPPRPRSTTTTRTTSSASAA--PAAAQRLVAMAGSGKFFVGGNWKC 57
>ENC_DROME (Q8MSX1) Protein encore| Length = 1818 Score = 27.7 bits (60), Expect = 6.8 Identities = 22/71 (30%), Positives = 32/71 (45%) Frame = -3 Query: 320 RFLNRENSAARCSMYSSSHRSITPPCSLNSPGKLFRNPDRFSGCFRQFASAATIVRSSTP 141 R +++ NS + S SH S S NSP + + Q SAA ++ P Sbjct: 1591 RSVSQRNSPSANGGGSGSHES-----SNNSPNSIVGS---------QSNSAANTPNAAAP 1636 Query: 140 RPPRPEKALVS 108 PP+P+ LVS Sbjct: 1637 PPPQPQPTLVS 1647
>DGK1_DROME (Q01583) Diacylglycerol kinase 1 (EC 2.7.1.107) (Diglyceride kinase| 1) (DGK 1) (DAG kinase 1) Length = 1020 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = -3 Query: 320 RFLNRENSAARCSMYSSSHRSITPPCSLNSPGKLFRNP 207 R +N+ + ++ + ++H ITPP L+ P +F NP Sbjct: 331 RSVNQAHKKSQMHHHQATHFQITPPDELSCPLLVFVNP 368
>ANX4_FRAAN (P51074) Annexin-like protein RJ4| Length = 314 Score = 27.3 bits (59), Expect = 8.9 Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Frame = +1 Query: 94 DEVQALTKAFSGLGGLGVDERTMVAALANWRKQPEKRSGFRKSFPGLFKEHGGVMERCED 273 ++ +AL K+ G G +E+ +++ L + + +R R ++ L++E Sbjct: 14 EDAEALRKSVKGWG---TNEKAIISILGH--RNAGQRKEIRAAYEQLYQE---------- 58 Query: 274 EYMLHLAAEFSR-FKNLMVLWAMHPWERDARLAH 372 + + L +E S F+ + W + P +RDA LA+ Sbjct: 59 DLLKPLESELSGDFEKAVYRWTLDPADRDAVLAN 92
>AMPM_PYRHO (O58362) Methionine aminopeptidase (EC 3.4.11.18) (MAP) (Peptidase| M) Length = 295 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/29 (34%), Positives = 19/29 (65%) Frame = -2 Query: 384 VEDVVREAGVALPRVHRPQHHQVLEPGEL 298 +E AGV++P ++RP + VL+ G++ Sbjct: 155 IERYKLHAGVSIPNIYRPHDNYVLQEGDV 183
>SCP_NERDI (P04571) Sarcoplasmic calcium-binding protein (SCP)| Length = 174 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +1 Query: 133 GGLGVDERTMVAALANWRKQPEKRSGFRKSFPGLFK 240 GG G+DE T + ++ K PE +S P F+ Sbjct: 66 GGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFR 101
>PCD15_HUMAN (Q96QU1) Protocadherin-15 precursor| Length = 1955 Score = 27.3 bits (59), Expect = 8.9 Identities = 20/54 (37%), Positives = 24/54 (44%) Frame = -3 Query: 287 CSMYSSSHRSITPPCSLNSPGKLFRNPDRFSGCFRQFASAATIVRSSTPRPPRP 126 C ++SS R TP C L P + RN F FA I S+ P PP P Sbjct: 1706 CVLHSSLSRRETPICML--PIETERN------IFENFAHPPNISPSACPLPPPP 1751
>MURB_PROMM (Q7V9C4) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 307 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -3 Query: 269 SHRSITPPCSLNSPGKLFRNPD 204 +HR+ T P L S G +FRNP+ Sbjct: 212 THRTTTQPYQLPSCGSVFRNPE 233
>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)| Length = 1386 Score = 27.3 bits (59), Expect = 8.9 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 17/90 (18%) Frame = +1 Query: 166 AALANWRKQPEKRSGFRKSFPGLFKEHGGVMERCE-----------------DEYMLHLA 294 AA A+W++Q ++R GF+ + G+ + H + + + D + H Sbjct: 349 AAAAHWQQQQQQRVGFQ--YQGIMQRHTQLQQILQQYQQVIQHSPHIQTMSLDVQLRHYE 406 Query: 295 AEFSRFKNLMVLWAMHPWERDARLAHHVLH 384 + +F++L WER+ +L LH Sbjct: 407 MQQQQFQHL-----FQDWEREFQLWEEQLH 431
>GLNA3_PHAVU (P00965) Glutamine synthetase N-1 (EC 6.3.1.2) (Gln isozyme gamma)| (Glutamate--ammonia ligase) Length = 356 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = +1 Query: 61 SLAILVRATMADEVQALTKAFSGLGGLGVDERTMVAALANWRKQPEK 201 S++ LV ++D + + + +GG G+D R+ L+ K P K Sbjct: 3 SISDLVNLNLSDSTERVIAEYIWVGGSGMDMRSKARTLSGPVKDPSK 49 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,900,011 Number of Sequences: 219361 Number of extensions: 681774 Number of successful extensions: 2529 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2475 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2529 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
