ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet97b12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104639.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-E05, full insert sequence Length = 1254 Score = 262 bits (132), Expect = 8e-67 Identities = 246/284 (86%) Strand = Plus / Plus Query: 112 accaaggccttctcaggtctggggggtctgggcgtggacgagcggacgatggtggcggcg 171 |||| |||||||||||| || || || || ||||||||||||| | |||||||| ||||| Sbjct: 132 accagggccttctcagggctcggtggcctcggcgtggacgagccggcgatggtgtcggcg 191 Query: 172 ctggcgaactggcggaagcagccggagaagcggtcggggttccggaagagcttcccgggg 231 ||||| || ||||| | |||||||||||||| ||| |||||| ||||||||||| || Sbjct: 192 ctggccaagtggcgcaggcagccggagaagctgtccgggttcaggaagagcttcaatggc 251 Query: 232 ctgttcaaggagcacggcggcgtgatggagcggtgcgaggacgagtacatgctgcacctg 291 | |||||||| || |||||||| || ||| ||||||||| ||||||||||| ||||| Sbjct: 252 ttcttcaaggatcatggcggcgtcatcgagaagtgcgaggaggagtacatgctccacctc 311 Query: 292 gccgccgagttctcccggttcaagaacctgatggtgctgtgggcgatgcacccgtgggag 351 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 312 gccgccgagttctcgcggttcaagaacctgatggtgatgtgggcgatgcacccgtgggag 371 Query: 352 cgcgacgcccgcctcgcgcaccacgtcctccaccaggcccaccc 395 |||||||| || || ||||||||||| ||||||||||| ||||| Sbjct: 372 cgcgacgcgcggctggcgcaccacgtgctccaccaggcgcaccc 415
>dbj|AK098879.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F11, full insert sequence Length = 1254 Score = 262 bits (132), Expect = 8e-67 Identities = 246/284 (86%) Strand = Plus / Plus Query: 112 accaaggccttctcaggtctggggggtctgggcgtggacgagcggacgatggtggcggcg 171 |||| |||||||||||| || || || || ||||||||||||| | |||||||| ||||| Sbjct: 133 accagggccttctcagggctcggtggcctcggcgtggacgagccggcgatggtgtcggcg 192 Query: 172 ctggcgaactggcggaagcagccggagaagcggtcggggttccggaagagcttcccgggg 231 ||||| || ||||| | |||||||||||||| ||| |||||| ||||||||||| || Sbjct: 193 ctggccaagtggcgcaggcagccggagaagctgtccgggttcaggaagagcttcaatggc 252 Query: 232 ctgttcaaggagcacggcggcgtgatggagcggtgcgaggacgagtacatgctgcacctg 291 | |||||||| || |||||||| || ||| ||||||||| ||||||||||| ||||| Sbjct: 253 ttcttcaaggatcatggcggcgtcatcgagaagtgcgaggaggagtacatgctccacctc 312 Query: 292 gccgccgagttctcccggttcaagaacctgatggtgctgtgggcgatgcacccgtgggag 351 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 313 gccgccgagttctcgcggttcaagaacctgatggtgatgtgggcgatgcacccgtgggag 372 Query: 352 cgcgacgcccgcctcgcgcaccacgtcctccaccaggcccaccc 395 |||||||| || || ||||||||||| ||||||||||| ||||| Sbjct: 373 cgcgacgcgcggctggcgcaccacgtgctccaccaggcgcaccc 416
>dbj|AK060054.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-B07, full insert sequence Length = 1284 Score = 262 bits (132), Expect = 8e-67 Identities = 246/284 (86%) Strand = Plus / Plus Query: 112 accaaggccttctcaggtctggggggtctgggcgtggacgagcggacgatggtggcggcg 171 |||| |||||||||||| || || || || ||||||||||||| | |||||||| ||||| Sbjct: 132 accagggccttctcagggctcggtggcctcggcgtggacgagccggcgatggtgtcggcg 191 Query: 172 ctggcgaactggcggaagcagccggagaagcggtcggggttccggaagagcttcccgggg 231 ||||| || ||||| | |||||||||||||| ||| |||||| ||||||||||| || Sbjct: 192 ctggccaagtggcgcaggcagccggagaagctgtccgggttcaggaagagcttcaatggc 251 Query: 232 ctgttcaaggagcacggcggcgtgatggagcggtgcgaggacgagtacatgctgcacctg 291 | |||||||| || |||||||| || ||| ||||||||| ||||||||||| ||||| Sbjct: 252 ttcttcaaggatcatggcggcgtcatcgagaagtgcgaggaggagtacatgctccacctc 311 Query: 292 gccgccgagttctcccggttcaagaacctgatggtgctgtgggcgatgcacccgtgggag 351 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 312 gccgccgagttctcgcggttcaagaacctgatggtgatgtgggcgatgcacccgtgggag 371 Query: 352 cgcgacgcccgcctcgcgcaccacgtcctccaccaggcccaccc 395 |||||||| || || ||||||||||| ||||||||||| ||||| Sbjct: 372 cgcgacgcgcggctggcgcaccacgtgctccaccaggcgcaccc 415
>ref|XM_475176.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1011 Score = 139 bits (70), Expect = 8e-30 Identities = 163/194 (84%) Strand = Plus / Plus Query: 112 accaaggccttctcaggtctggggggtctgggcgtggacgagcggacgatggtggcggcg 171 |||| |||||||||||| || || || || ||||||||||||| | |||||||| ||||| Sbjct: 25 accagggccttctcagggctcggtggcctcggcgtggacgagccggcgatggtgtcggcg 84 Query: 172 ctggcgaactggcggaagcagccggagaagcggtcggggttccggaagagcttcccgggg 231 ||||| || ||||| | |||||||||||||| ||| |||||| ||||||||||| || Sbjct: 85 ctggccaagtggcgcaggcagccggagaagctgtccgggttcaggaagagcttcaatggc 144 Query: 232 ctgttcaaggagcacggcggcgtgatggagcggtgcgaggacgagtacatgctgcacctg 291 | |||||||| || |||||||| || ||| ||||||||| ||||||||||| ||||| Sbjct: 145 ttcttcaaggatcatggcggcgtcatcgagaagtgcgaggaggagtacatgctccacctc 204 Query: 292 gccgccgagttctc 305 |||||||||||||| Sbjct: 205 gccgccgagttctc 218 Score = 115 bits (58), Expect = 1e-22 Identities = 76/82 (92%) Strand = Plus / Plus Query: 314 agaacctgatggtgctgtgggcgatgcacccgtgggagcgcgacgcccgcctcgcgcacc 373 |||||||||||||| ||||||||||||||||||||||||||||||| || || ||||||| Sbjct: 278 agaacctgatggtgatgtgggcgatgcacccgtgggagcgcgacgcgcggctggcgcacc 337 Query: 374 acgtcctccaccaggcccaccc 395 |||| ||||||||||| ||||| Sbjct: 338 acgtgctccaccaggcgcaccc 359
>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088M05, complete sequence Length = 153368 Score = 139 bits (70), Expect = 8e-30 Identities = 148/174 (85%) Strand = Plus / Minus Query: 142 ggcgtggacgagcggacgatggtggcggcgctggcgaactggcggaagcagccggagaag 201 ||||||||||||| | |||||||| |||||||||| || ||||| | ||||||||||||| Sbjct: 144685 ggcgtggacgagccggcgatggtgtcggcgctggccaagtggcgcaggcagccggagaag 144626 Query: 202 cggtcggggttccggaagagcttcccggggctgttcaaggagcacggcggcgtgatggag 261 | ||| |||||| ||||||||||| || | |||||||| || |||||||| || ||| Sbjct: 144625 ctgtccgggttcaggaagagcttcaatggcttcttcaaggatcatggcggcgtcatcgag 144566 Query: 262 cggtgcgaggacgagtacatgctgcacctggccgccgagttctcccggttcaag 315 ||||||||| ||||||||||| ||||| |||||||||||||| ||||||||| Sbjct: 144565 aagtgcgaggaggagtacatgctccacctcgccgccgagttctcgcggttcaag 144512 Score = 115 bits (58), Expect = 1e-22 Identities = 76/82 (92%) Strand = Plus / Minus Query: 314 agaacctgatggtgctgtgggcgatgcacccgtgggagcgcgacgcccgcctcgcgcacc 373 |||||||||||||| ||||||||||||||||||||||||||||||| || || ||||||| Sbjct: 144409 agaacctgatggtgatgtgggcgatgcacccgtgggagcgcgacgcgcggctggcgcacc 144350 Query: 374 acgtcctccaccaggcccaccc 395 |||| ||||||||||| ||||| Sbjct: 144349 acgtgctccaccaggcgcaccc 144328
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 139 bits (70), Expect = 8e-30 Identities = 148/174 (85%) Strand = Plus / Minus Query: 142 ggcgtggacgagcggacgatggtggcggcgctggcgaactggcggaagcagccggagaag 201 ||||||||||||| | |||||||| |||||||||| || ||||| | ||||||||||||| Sbjct: 18351473 ggcgtggacgagccggcgatggtgtcggcgctggccaagtggcgcaggcagccggagaag 18351414 Query: 202 cggtcggggttccggaagagcttcccggggctgttcaaggagcacggcggcgtgatggag 261 | ||| |||||| ||||||||||| || | |||||||| || |||||||| || ||| Sbjct: 18351413 ctgtccgggttcaggaagagcttcaatggcttcttcaaggatcatggcggcgtcatcgag 18351354 Query: 262 cggtgcgaggacgagtacatgctgcacctggccgccgagttctcccggttcaag 315 ||||||||| ||||||||||| ||||| |||||||||||||| ||||||||| Sbjct: 18351353 aagtgcgaggaggagtacatgctccacctcgccgccgagttctcgcggttcaag 18351300 Score = 115 bits (58), Expect = 1e-22 Identities = 76/82 (92%) Strand = Plus / Minus Query: 314 agaacctgatggtgctgtgggcgatgcacccgtgggagcgcgacgcccgcctcgcgcacc 373 |||||||||||||| ||||||||||||||||||||||||||||||| || || ||||||| Sbjct: 18351197 agaacctgatggtgatgtgggcgatgcacccgtgggagcgcgacgcgcggctggcgcacc 18351138 Query: 374 acgtcctccaccaggcccaccc 395 |||| ||||||||||| ||||| Sbjct: 18351137 acgtgctccaccaggcgcaccc 18351116
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.087 Identities = 26/27 (96%) Strand = Plus / Plus Query: 154 cggacgatggtggcggcgctggcgaac 180 |||| |||||||||||||||||||||| Sbjct: 17683946 cggaggatggtggcggcgctggcgaac 17683972
>dbj|AP003951.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1288_C01 Length = 111223 Score = 46.1 bits (23), Expect = 0.087 Identities = 26/27 (96%) Strand = Plus / Plus Query: 154 cggacgatggtggcggcgctggcgaac 180 |||| |||||||||||||||||||||| Sbjct: 61844 cggaggatggtggcggcgctggcgaac 61870
>gb|AY449458.1| Oikopleura dioica clone BACOIKO002 4xj18, complete sequence Length = 188193 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 334 gcgatgcacccgtgggagcgcgacgcccgc 363 |||||||||| ||||||||||| ||||||| Sbjct: 79957 gcgatgcacctgtgggagcgcgtcgcccgc 79986
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 155 ggacgatggtggcggcgctggc 176 |||||||||||||||||||||| Sbjct: 2068018 ggacgatggtggcggcgctggc 2068039
>ref|XM_604958.2| PREDICTED: Bos taurus similar to Proteinase activated receptor 1 precursor (PAR-1) (Thrombin receptor) (Coagulation factor II receptor) (LOC526585), mRNA Length = 3515 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 276 gtacatgctgcacctggccgc 296 ||||||||||||||||||||| Sbjct: 573 gtacatgctgcacctggccgc 593
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 357 cgcccgcctcgcgcaccacgtcctc 381 ||||||||||||||| ||||||||| Sbjct: 127334 cgcccgcctcgcgcagcacgtcctc 127358 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 gacgcccgcctcgcgcacca 374 |||||||||||||||||||| Sbjct: 854313 gacgcccgcctcgcgcacca 854294
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 349 gagcgcgacgcccgcctcgcg 369 ||||||||||||||||||||| Sbjct: 595421 gagcgcgacgcccgcctcgcg 595441
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 231 gctgttcaaggagcacggcggcgtgatg 258 |||||||||||| |||||||||||||| Sbjct: 484028 gctgttcaaggaagacggcggcgtgatg 484055
>gb|AF525118.1| Ornithorhynchus anatinus isolate OranVL18 immunoglobulin lambda light chain mRNA, partial cds Length = 417 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 agccggagaagcggtcgggg 210 |||||||||||||||||||| Sbjct: 247 agccggagaagcggtcgggg 228
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 gcggcgctggcgaactggcg 185 |||||||||||||||||||| Sbjct: 1613989 gcggcgctggcgaactggcg 1614008
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 cgcgcaccacgtcctccacc 385 |||||||||||||||||||| Sbjct: 2177765 cgcgcaccacgtcctccacc 2177784
>gb|AF389755.1| Uncultured bacterium clone NIW6-2 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tgctgcacctggccgccgag 300 |||||||||||||||||||| Sbjct: 137 tgctgcacctggccgccgag 156
>gb|AF389760.1| Uncultured bacterium clone NIW4-4 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tgctgcacctggccgccgag 300 |||||||||||||||||||| Sbjct: 137 tgctgcacctggccgccgag 156
>gb|AF389784.1| Uncultured bacterium clone NIS13-2 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tgctgcacctggccgccgag 300 |||||||||||||||||||| Sbjct: 137 tgctgcacctggccgccgag 156
>gb|AF389785.1| Uncultured bacterium clone NIS13-1 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tgctgcacctggccgccgag 300 |||||||||||||||||||| Sbjct: 137 tgctgcacctggccgccgag 156
>gb|AF389786.1| Uncultured bacterium clone NIS12-3 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tgctgcacctggccgccgag 300 |||||||||||||||||||| Sbjct: 137 tgctgcacctggccgccgag 156
>gb|AF389787.1| Uncultured bacterium clone NIS12-2 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tgctgcacctggccgccgag 300 |||||||||||||||||||| Sbjct: 137 tgctgcacctggccgccgag 156
>gb|AF389788.1| Uncultured bacterium clone NIS12-1 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tgctgcacctggccgccgag 300 |||||||||||||||||||| Sbjct: 137 tgctgcacctggccgccgag 156
>gb|AF389791.1| Uncultured bacterium clone NIS11-2 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tgctgcacctggccgccgag 300 |||||||||||||||||||| Sbjct: 137 tgctgcacctggccgccgag 156
>gb|AF389795.1| Uncultured bacterium clone NIS10-2 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tgctgcacctggccgccgag 300 |||||||||||||||||||| Sbjct: 137 tgctgcacctggccgccgag 156
>gb|AF389797.1| Uncultured bacterium clone NIS9-2 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tgctgcacctggccgccgag 300 |||||||||||||||||||| Sbjct: 137 tgctgcacctggccgccgag 156
>gb|AF389801.1| Uncultured bacterium clone NIS8-1 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tgctgcacctggccgccgag 300 |||||||||||||||||||| Sbjct: 137 tgctgcacctggccgccgag 156
>gb|AY113145.1| Tachyglossus aculeatus clone TaacVL134 immunoglobulin lambda light chain mRNA, partial cds Length = 436 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 agccggagaagcggtcgggg 210 |||||||||||||||||||| Sbjct: 291 agccggagaagcggtcgggg 272
>gb|AY113116.1| Tachyglossus aculeatus clone TaacVL37 immunoglobulin lambda light chain mRNA, partial cds Length = 453 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 agccggagaagcggtcgggg 210 |||||||||||||||||||| Sbjct: 286 agccggagaagcggtcgggg 267
>emb|X63352.1|RCFDXD R.capsulatus fdxD, nifH and nifD (5'end) genes Length = 2423 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tgctgcacctggccgccgag 300 |||||||||||||||||||| Sbjct: 1466 tgctgcacctggccgccgag 1485
>emb|X07866.1|RCNIFH Rhodobacter capsulatus nifH gene Length = 1040 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tgctgcacctggccgccgag 300 |||||||||||||||||||| Sbjct: 268 tgctgcacctggccgccgag 287
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gctggcgaactggcggaagc 190 |||||||||||||||||||| Sbjct: 3862801 gctggcgaactggcggaagc 3862820
>gb|AC091996.3| Homo sapiens chromosome 5 clone RP11-96G10, complete sequence Length = 182797 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 31 tcatcgtctccgtctcctcaaatt 54 ||||| |||||||||||||||||| Sbjct: 167852 tcatcttctccgtctcctcaaatt 167875
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 cgatggtggcggcgctggcg 177 |||||||||||||||||||| Sbjct: 3675378 cgatggtggcggcgctggcg 3675359
>gb|DQ140718.1| Uncultured bacterium clone nif1003323U12 dinitrogen reductase-like (nifH) gene, partial sequence Length = 326 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tgctgcacctggccgccgag 300 |||||||||||||||||||| Sbjct: 41 tgctgcacctggccgccgag 60
>gb|DQ140602.1| Uncultured bacterium clone nif1003301M20 dinitrogen reductase (nifH) gene, partial cds Length = 324 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tgctgcacctggccgccgag 300 |||||||||||||||||||| Sbjct: 41 tgctgcacctggccgccgag 60
>ref|XM_234547.3| PREDICTED: Rattus norvegicus amnionless (predicted) (Amn_predicted), mRNA Length = 1596 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 195 ggagaagcggtcggggttccggaagagc 222 ||||||||||||||| || ||||||||| Sbjct: 549 ggagaagcggtcgggattgcggaagagc 522
>dbj|AB079629.1| Rhodovulum strictum nifH gene for nitrogenase, partial cds, strain:JCM 9221 Length = 461 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tgctgcacctggccgccgag 300 |||||||||||||||||||| Sbjct: 161 tgctgcacctggccgccgag 180
>dbj|AB079628.1| Rhodovulum strictum nifH gene for nitrogenase, partial cds, strain:JCM 9220 Length = 461 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tgctgcacctggccgccgag 300 |||||||||||||||||||| Sbjct: 161 tgctgcacctggccgccgag 180
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 349 gagcgcgacgcccgcctcgcgcaccacgtcct 380 ||||||||||||| |||||||||| |||||| Sbjct: 1531340 gagcgcgacgcccagctcgcgcacctcgtcct 1531309
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 ccgcctcgcgcaccacgtcc 379 |||||||||||||||||||| Sbjct: 1225257 ccgcctcgcgcaccacgtcc 1225238
>gb|M15270.1|RCANIFHD Rhodobacter capsulatus nifH gene encoding dinitrogenase reductase and nifD gene encoding the alpha subunit of dinitrogenase Length = 2466 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tgctgcacctggccgccgag 300 |||||||||||||||||||| Sbjct: 191 tgctgcacctggccgccgag 210 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,534,667 Number of Sequences: 3902068 Number of extensions: 2534667 Number of successful extensions: 56865 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55771 Number of HSP's gapped (non-prelim): 1088 length of query: 403 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 381 effective length of database: 17,147,199,772 effective search space: 6533083113132 effective search space used: 6533083113132 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
