| Clone Name | baet97b10 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ237754.1|HVU237754 Hordeum vulgare high light-induced mRNA for putative lectin (18kDa) Length = 623 Score = 724 bits (365), Expect = 0.0 Identities = 388/398 (97%) Strand = Plus / Plus Query: 12 tctccatctcggcgcttcgttgtgagttaacgaaatgagcagcagcccggtggtgaagct 71 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tctccatctcggcgcttcgttgtgagttaacgaaatgagcagcagcccggtggtgaagct 60 Query: 72 ggggccgtnnnnnnncgacgacggggtggcccacgacatcacggtggcgccgcagcggct 131 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggggccgtgggggggcgacgacggggtggcccacgacatcacggtggcgccgcagcggct 120 Query: 132 agagagcatcaccatccgctggggcaaggtcctcgactccgtcgccttcacctacaggga 191 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 121 ggagagcatcaccatccgctggggcaaggtcctgcactccgtcgccttcacctacaggga 180 Query: 192 caaggacaaccagctgcacaccgccgggccctggggcggcgccggaggggagaaggaaga 251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 caaggacaaccagctgcacaccgccgggccctggggcggcgccggaggggagaaggaaga 240 Query: 252 cccggacacgatcacgttgggcccctcggagtacataactcaggtcgactggtcggtggg 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 cccggacacgatcacgttgggcccctcggagtacataactcaggtcgactggtcggtggg 300 Query: 312 accgttcaagctcaaggagatcgagcactgcatcacctcgctcaagtttgtgaccaacca 371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 accgttcaagctcaaggagatcgagcactgcatcacctcgctcaagtttgtgaccaacca 360 Query: 372 ggccagctacggcccgttcgggtacgcggtggacagca 409 |||||||||||||||||||||||||||||||||||||| Sbjct: 361 ggccagctacggcccgttcgggtacgcggtggacagca 398
>gb|AY336086.1| Hordeum vulgare high light protein (HL2) gene, complete cds Length = 1203 Score = 375 bits (189), Expect = e-101 Identities = 206/214 (96%) Strand = Plus / Plus Query: 48 gagcagcagcccggtggtgaagctggggccgtnnnnnnncgacgacggggtggcccacga 107 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 528 gagcagcagcccggtggtgaagctggggccgtgggggggcgacgacggggtggcccacga 587 Query: 108 catcacggtggcgccgcagcggctagagagcatcaccatccgctggggcaaggtcctcga 167 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 588 catcacggtggcgccgcagcggctggagagcatcaccatccgctggggcaaggtcctcga 647 Query: 168 ctccgtcgccttcacctacagggacaaggacaaccagctgcacaccgccgggccctgggg 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 648 ctccgtcgccttcacctacagggacaaggacaaccagctgcacaccgccgggccctgggg 707 Query: 228 cggcgccggaggggagaaggaagacccggacacg 261 |||||||||||||||||||||||||||||||||| Sbjct: 708 cggcgccggaggggagaaggaagacccggacacg 741 Score = 295 bits (149), Expect = 6e-77 Identities = 149/149 (100%) Strand = Plus / Plus Query: 261 gatcacgttgggcccctcggagtacataactcaggtcgactggtcggtgggaccgttcaa 320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 830 gatcacgttgggcccctcggagtacataactcaggtcgactggtcggtgggaccgttcaa 889 Query: 321 gctcaaggagatcgagcactgcatcacctcgctcaagtttgtgaccaaccaggccagcta 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 890 gctcaaggagatcgagcactgcatcacctcgctcaagtttgtgaccaaccaggccagcta 949 Query: 381 cggcccgttcgggtacgcggtggacagca 409 ||||||||||||||||||||||||||||| Sbjct: 950 cggcccgttcgggtacgcggtggacagca 978 Score = 95.6 bits (48), Expect = 1e-16 Identities = 48/48 (100%) Strand = Plus / Plus Query: 1 atcagccctactctccatctcggcgcttcgttgtgagttaacgaaatg 48 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 atcagccctactctccatctcggcgcttcgttgtgagttaacgaaatg 425
>emb|AJ303111.1|HVU303111 Hordeum vulgare partial mRNA for lectin, clone 4B10T7 Length = 336 Score = 319 bits (161), Expect = 4e-84 Identities = 170/173 (98%) Strand = Plus / Plus Query: 215 ccgggccctggggcggcgccggaggggagaaggaagacccggacacgatcacgttgggcc 274 ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 153 ccgggccatggggcggcaccggaggggagaaggaagacccggacacgatcacgttgggcc 212 Query: 275 cctcggagtacataactcaggtcgactggtcggtgggaccgttcaagctcaaggagatcg 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 213 cctcggagtacataactcaggtcgactggtcggtgggaccgttcaagctcaaggagatcg 272 Query: 335 agcactgcatcacctcgctcaagtttgtgaccaaccaggccagctacggcccg 387 |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 273 agcactgcatcacctcgctcaagtttgtgaccaaccaggccagctacgtcccg 325
>gb|AY109764.1| Zea mays CL5759_1 mRNA sequence Length = 815 Score = 89.7 bits (45), Expect = 7e-15 Identities = 84/97 (86%) Strand = Plus / Plus Query: 135 gagcatcaccatccgctggggcaaggtcctcgactccgtcgccttcacctacagggacaa 194 ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| | Sbjct: 157 gagcatcaccatccgctggggcaaggtcctcgactggatcgccttctcctaccgggacca 216 Query: 195 ggacaaccagctgcacaccgccgggccctggggcggc 231 | | |||||||||||||||| |||||||||||| Sbjct: 217 gagcgggaagctgcacaccgccggcccctggggcggc 253 Score = 60.0 bits (30), Expect = 6e-06 Identities = 90/110 (81%) Strand = Plus / Plus Query: 300 ctggtcggtgggaccgttcaagctcaaggagatcgagcactgcatcacctcgctcaagtt 359 |||||| ||||| ||||||||| ||||| | | |||| |||||||||||| ||||| | Sbjct: 319 ctggtccgtgggcccgttcaagttcaagaacgtggagcgctgcatcacctccttcaaggt 378 Query: 360 tgtgaccaaccaggccagctacggcccgttcgggtacgcggtggacagca 409 |||||||||| |||||||||||| ||||| ||| ||||||||||| Sbjct: 379 cgtgaccaacctccgcagctacggccctttcggccacggggtggacagca 428
>ref|XM_813869.1| Trypanosoma cruzi strain CL Brener receptor-type adenylate cyclase (Tc00.1047053506717.20) partial mRNA Length = 3843 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 49 agcagcagcccggtggtgaagc 70 |||||||||||||||||||||| Sbjct: 2258 agcagcagcccggtggtgaagc 2237
>ref|XM_470893.1| Oryza sativa (japonica cultivar-group), mRNA Length = 576 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 154 ggcaaggtcctcgactccgtcgccttcacctac 186 |||||| || |||||||| |||||||||||||| Sbjct: 157 ggcaagatcatcgactccatcgccttcacctac 189
>ref|NM_053431.1| Rattus norvegicus quiescin Q6 (Qscn6), mRNA Length = 2472 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 cacctcgctcaagtttgtgac 365 ||||||||||||||||||||| Sbjct: 30 cacctcgctcaagtttgtgac 10
>gb|AC091787.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0087G11, complete sequence Length = 169728 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 154 ggcaaggtcctcgactccgtcgccttcacctac 186 |||||| || |||||||| |||||||||||||| Sbjct: 2821 ggcaagatcatcgactccatcgccttcacctac 2789
>gb|AC084295.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0015K03, complete sequence Length = 89172 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 154 ggcaaggtcctcgactccgtcgccttcacctac 186 |||||| || |||||||| |||||||||||||| Sbjct: 41815 ggcaagatcatcgactccatcgccttcacctac 41847 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 acggtggcgccgcagcggct 131 |||||||||||||||||||| Sbjct: 47097 acggtggcgccgcagcggct 47116
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 154 ggcaaggtcctcgactccgtcgccttcacctac 186 |||||| || |||||||| |||||||||||||| Sbjct: 16047597 ggcaagatcatcgactccatcgccttcacctac 16047629 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 acggtggcgccgcagcggct 131 |||||||||||||||||||| Sbjct: 16052879 acggtggcgccgcagcggct 16052898
>gb|AF217799.1| Rattus norvegicus FAD-dependent sulfhydryl oxidase mRNA, complete cds Length = 2455 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 cacctcgctcaagtttgtgac 365 ||||||||||||||||||||| Sbjct: 30 cacctcgctcaagtttgtgac 10
>gb|AF285078.1|AF285078 Rattus norvegicus FAD-dependent sulfhydryl oxidase-2 mRNA, complete cds Length = 2472 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 cacctcgctcaagtttgtgac 365 ||||||||||||||||||||| Sbjct: 30 cacctcgctcaagtttgtgac 10
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 154 ggcaaggtcctcgactccgtcgccttcacctac 186 |||||| || |||||||| |||||||||||||| Sbjct: 16042130 ggcaagatcatcgactccatcgccttcacctac 16042162 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 acggtggcgccgcagcggct 131 |||||||||||||||||||| Sbjct: 16047412 acggtggcgccgcagcggct 16047431
>ref|NM_194738.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBb0004A06.10), mRNA Length = 432 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 cacaccgccgggccctggggcggc 231 ||||||||||| |||||||||||| Sbjct: 136 cacaccgccggaccctggggcggc 159
>ref|NM_184601.1| Oryza sativa (japonica cultivar-group), mRNA Length = 444 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 acggtggcgccgcagcggct 131 |||||||||||||||||||| Sbjct: 67 acggtggcgccgcagcggct 86
>gb|AY425010.1| Diplonema sp. ATCC 50224 18S ribosomal RNA gene, partial sequence Length = 2046 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 ccgctggggcaaggtcctcg 166 |||||||||||||||||||| Sbjct: 1057 ccgctggggcaaggtcctcg 1038
>ref|XM_958316.1| Neurospora crassa OR74A hypothetical protein (NCU08439.1) partial mRNA Length = 4062 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 gtcctcgactccgtcgccttcacc 183 ||||||||||||||| |||||||| Sbjct: 3376 gtcctcgactccgtctccttcacc 3399
>gb|AF131866.2| Mus musculus chromosome X clone CT7-271B7 map qA7.1, complete sequence Length = 110310 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 ttgtgaccaaccaggccagc 378 |||||||||||||||||||| Sbjct: 21968 ttgtgaccaaccaggccagc 21949
>gb|AC124212.2| Mus musculus chromosome X clone CT7-532E7 map qA7.1, complete sequence Length = 109783 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 ttgtgaccaaccaggccagc 378 |||||||||||||||||||| Sbjct: 105929 ttgtgaccaaccaggccagc 105910
>ref|XM_329484.1| Neurospora crassa OR74A hypothetical protein (NCU08439.1) partial mRNA Length = 4062 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 gtcctcgactccgtcgccttcacc 183 ||||||||||||||| |||||||| Sbjct: 3376 gtcctcgactccgtctccttcacc 3399
>ref|XM_754503.1| Ustilago maydis 521 hypothetical protein (UM03449.1) partial mRNA Length = 1080 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 caagctcaaggagatcgagc 337 |||||||||||||||||||| Sbjct: 954 caagctcaaggagatcgagc 973
>ref|XM_756799.1| Ustilago maydis 521 hypothetical protein (UM05745.1) partial mRNA Length = 3906 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 catcacctcgctcaagtttg 361 |||||||||||||||||||| Sbjct: 192 catcacctcgctcaagtttg 211
>gb|AY310323.1| Streptomyces sp. FR-008 heptaene macrolide complex synthesis gene cluster, complete sequence Length = 138203 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 cgacatcacggtggcgccgc 124 |||||||||||||||||||| Sbjct: 39378 cgacatcacggtggcgccgc 39397
>ref|XM_809729.1| Trypanosoma cruzi strain CL Brener receptor-type adenylate cyclase (Tc00.1047053506355.20) partial mRNA Length = 3846 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 cagcagcccggtggtgaagc 70 |||||||||||||||||||| Sbjct: 2256 cagcagcccggtggtgaagc 2237
>ref|XM_801724.1| Trypanosoma cruzi strain CL Brener receptor-type adenylate cyclase (Tc00.1047053511043.60) partial mRNA Length = 2846 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 cagcagcccggtggtgaagc 70 |||||||||||||||||||| Sbjct: 1256 cagcagcccggtggtgaagc 1237
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 cacaccgccgggccctggggcggc 231 ||||||||||| |||||||||||| Sbjct: 1978469 cacaccgccggaccctggggcggc 1978446
>gb|AC099734.5| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0004A06, complete sequence Length = 153510 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 cacaccgccgggccctggggcggc 231 ||||||||||| |||||||||||| Sbjct: 69198 cacaccgccggaccctggggcggc 69175
>emb|BX284762.1|NCB13B3 Neurospora crassa DNA linkage group II BAC contig B13B3 Length = 82584 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 gtcctcgactccgtcgccttcacc 183 ||||||||||||||| |||||||| Sbjct: 33368 gtcctcgactccgtctccttcacc 33391
>emb|AJ575648.1|STH575648 Streptomyces thioluteus aureothin biosynthesis gene cluster (aurABCDEFGHI genes), strain HKI-22 Length = 29132 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 cgacatcacggtggcgccgc 124 |||||||||||||||||||| Sbjct: 6943 cgacatcacggtggcgccgc 6924
>emb|AJ300302.1|SGR300302 Streptomyces griseus partial ORF1, canA gene, canC gene, canF gene, canT gene, canRA gene and canRB gene Length = 39314 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 cgacatcacggtggcgccgc 124 |||||||||||||||||||| Sbjct: 33893 cgacatcacggtggcgccgc 33912
>emb|AJ011684.2|TCR011684 Trypanosoma cruzi ADC4 gene Length = 4586 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 agcagcagcccggtggtgaa 68 |||||||||||||||||||| Sbjct: 2549 agcagcagcccggtggtgaa 2530
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 cacaccgccgggccctggggcggc 231 ||||||||||| |||||||||||| Sbjct: 1978469 cacaccgccggaccctggggcggc 1978446
>gb|AF119812.1|AF119812 Diplonema sp. 2 small subunit ribosomal RNA gene, partial sequence Length = 1975 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 ccgctggggcaaggtcctcg 166 |||||||||||||||||||| Sbjct: 1026 ccgctggggcaaggtcctcg 1007
>dbj|AK111282.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-H05, full insert sequence Length = 727 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 cacaccgccgggccctggggcggc 231 ||||||||||| |||||||||||| Sbjct: 204 cacaccgccggaccctggggcggc 227
>dbj|AK099576.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037H02, full insert sequence Length = 823 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 acggtggcgccgcagcggct 131 |||||||||||||||||||| Sbjct: 225 acggtggcgccgcagcggct 244
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 cacaccgccgggccctggggcggc 231 ||||||||||| |||||||||||| Sbjct: 1978420 cacaccgccggaccctggggcggc 1978397
>gb|AF031927.1|AF031927 Trypanosoma cruzi adenylate cyclase, chaperone (DNAJ), and small G-protein (Rab1) genes, complete cds; and putative small G-protein gene, partial cds Length = 10139 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 cagcagcccggtggtgaagc 70 |||||||||||||||||||| Sbjct: 3970 cagcagcccggtggtgaagc 3951
>emb|AL807816.7| Mouse DNA sequence from clone RP23-13H12 on chromosome X, complete sequence Length = 193219 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 ttgtgaccaaccaggccagc 378 |||||||||||||||||||| Sbjct: 41220 ttgtgaccaaccaggccagc 41201 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,555,914 Number of Sequences: 3902068 Number of extensions: 2555914 Number of successful extensions: 47480 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47328 Number of HSP's gapped (non-prelim): 149 length of query: 409 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 387 effective length of database: 17,147,199,772 effective search space: 6635966311764 effective search space used: 6635966311764 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)