| Clone Name | baet97b08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 95.6 bits (48), Expect = 1e-16 Identities = 78/88 (88%) Strand = Plus / Plus Query: 200 ttcgagaagcgcgtcctgcagctgaagtcccgcgtcgggcccaagaagcggggcagcgcc 259 |||||| |||||||||||| | |||||||||||||||||||||||||| ||||||||| Sbjct: 16286641 ttcgaggagcgcgtcctgcgcatcaagtcccgcgtcgggcccaagaagcgaggcagcgcc 16286700 Query: 260 ggggcgcgcaagaggaaggccgccgccg 287 | |||||| |||||||||| || ||||| Sbjct: 16286701 gcggcgcggaagaggaagggcggcgccg 16286728 Score = 87.7 bits (44), Expect = 3e-14 Identities = 119/144 (82%) Strand = Plus / Plus Query: 296 gccgtcacgctgccgccggtgccgctgcgggagccccggtcggccctcggcctgcccgtc 355 ||||| ||||| ||||| ||||||||||||||| ||||||| || | ||| ||||||| Sbjct: 16286752 gccgtgacgctcccgcccgtgccgctgcgggaggcccggtcttccgtgggcgtgcccgtt 16286811 Query: 356 gagttcggcttcaccgcctacagcgagcggctcaacggcctcctggccacggtgggcctc 415 |||||||| |||| ||| ||||||||| ||||||||||| || || |||| ||||| Sbjct: 16286812 gagttcgggttcagcgcgtacagcgagaggctcaacggcgcgctcgcggcggtcggcctg 16286871 Query: 416 accgcgctgctgctggtggagctc 439 | ||||||||||| ||||||||| Sbjct: 16286872 gcggcgctgctgctcgtggagctc 16286895
>dbj|AP004742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0026F02 Length = 132237 Score = 95.6 bits (48), Expect = 1e-16 Identities = 78/88 (88%) Strand = Plus / Plus Query: 200 ttcgagaagcgcgtcctgcagctgaagtcccgcgtcgggcccaagaagcggggcagcgcc 259 |||||| |||||||||||| | |||||||||||||||||||||||||| ||||||||| Sbjct: 111533 ttcgaggagcgcgtcctgcgcatcaagtcccgcgtcgggcccaagaagcgaggcagcgcc 111592 Query: 260 ggggcgcgcaagaggaaggccgccgccg 287 | |||||| |||||||||| || ||||| Sbjct: 111593 gcggcgcggaagaggaagggcggcgccg 111620 Score = 87.7 bits (44), Expect = 3e-14 Identities = 119/144 (82%) Strand = Plus / Plus Query: 296 gccgtcacgctgccgccggtgccgctgcgggagccccggtcggccctcggcctgcccgtc 355 ||||| ||||| ||||| ||||||||||||||| ||||||| || | ||| ||||||| Sbjct: 111644 gccgtgacgctcccgcccgtgccgctgcgggaggcccggtcttccgtgggcgtgcccgtt 111703 Query: 356 gagttcggcttcaccgcctacagcgagcggctcaacggcctcctggccacggtgggcctc 415 |||||||| |||| ||| ||||||||| ||||||||||| || || |||| ||||| Sbjct: 111704 gagttcgggttcagcgcgtacagcgagaggctcaacggcgcgctcgcggcggtcggcctg 111763 Query: 416 accgcgctgctgctggtggagctc 439 | ||||||||||| ||||||||| Sbjct: 111764 gcggcgctgctgctcgtggagctc 111787
>dbj|AK108194.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-C05, full insert sequence Length = 820 Score = 95.6 bits (48), Expect = 1e-16 Identities = 78/88 (88%) Strand = Plus / Plus Query: 200 ttcgagaagcgcgtcctgcagctgaagtcccgcgtcgggcccaagaagcggggcagcgcc 259 |||||| |||||||||||| | |||||||||||||||||||||||||| ||||||||| Sbjct: 276 ttcgaggagcgcgtcctgcgcatcaagtcccgcgtcgggcccaagaagcgaggcagcgcc 335 Query: 260 ggggcgcgcaagaggaaggccgccgccg 287 | |||||| |||||||||| || ||||| Sbjct: 336 gcggcgcggaagaggaagggcggcgccg 363 Score = 87.7 bits (44), Expect = 3e-14 Identities = 119/144 (82%) Strand = Plus / Plus Query: 296 gccgtcacgctgccgccggtgccgctgcgggagccccggtcggccctcggcctgcccgtc 355 ||||| ||||| ||||| ||||||||||||||| ||||||| || | ||| ||||||| Sbjct: 387 gccgtgacgctcccgcccgtgccgctgcgggaggcccggtcttccgtgggcgtgcccgtt 446 Query: 356 gagttcggcttcaccgcctacagcgagcggctcaacggcctcctggccacggtgggcctc 415 |||||||| |||| ||| ||||||||| ||||||||||| || || |||| ||||| Sbjct: 447 gagttcgggttcagcgcgtacagcgagaggctcaacggcgcgctcgcggcggtcggcctg 506 Query: 416 accgcgctgctgctggtggagctc 439 | ||||||||||| ||||||||| Sbjct: 507 gcggcgctgctgctcgtggagctc 530
>ref|XM_472216.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 261 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Minus Query: 83 cacggccgcctccacgcgccgccgctcc 110 ||||||||||||||| |||||||||||| Sbjct: 141 cacggccgcctccacccgccgccgctcc 114
>emb|AL731623.3|OSJN00263 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083D01, complete sequence Length = 148353 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Plus Query: 83 cacggccgcctccacgcgccgccgctcc 110 ||||||||||||||| |||||||||||| Sbjct: 93999 cacggccgcctccacccgccgccgctcc 94026
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Plus Query: 83 cacggccgcctccacgcgccgccgctcc 110 ||||||||||||||| |||||||||||| Sbjct: 18513372 cacggccgcctccacccgccgccgctcc 18513399 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 99 cgccgccgctccctcccctccg 120 |||||||||||||||||||||| Sbjct: 29103739 cgccgccgctccctcccctccg 29103718 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gctgccgccggtgccgctgc 323 |||||||||||||||||||| Sbjct: 7291703 gctgccgccggtgccgctgc 7291684
>ref|XM_363962.1| Magnaporthe grisea 70-15 hypothetical protein (MG01889.4) partial mRNA Length = 3003 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Plus Query: 390 acggcctcctggccacggtgggc 412 ||||||||||||||||||||||| Sbjct: 326 acggcctcctggccacggtgggc 348
>ref|XM_480923.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1247 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 4 cacacatgcgcccaagggagca 25 |||||||||||||||||||||| Sbjct: 38 cacacatgcgcccaagggagca 17
>emb|AL606624.4|OSJN00058 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011J08, complete sequence Length = 157734 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 99 cgccgccgctccctcccctccg 120 |||||||||||||||||||||| Sbjct: 13205 cgccgccgctccctcccctccg 13184
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 4 cacacatgcgcccaagggagca 25 |||||||||||||||||||||| Sbjct: 8634380 cacacatgcgcccaagggagca 8634401 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gctgccgccggtgccgctgc 323 |||||||||||||||||||| Sbjct: 22914320 gctgccgccggtgccgctgc 22914301
>gb|AE004462.1| Pseudomonas aeruginosa PAO1, section 23 of 529 of the complete genome Length = 9953 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 406 ggtgggcctcaccgcgctgctgctgg 431 ||||||||||||||||||||| |||| Sbjct: 9213 ggtgggcctcaccgcgctgctcctgg 9188
>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21 Length = 187401 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 4 cacacatgcgcccaagggagca 25 |||||||||||||||||||||| Sbjct: 146291 cacacatgcgcccaagggagca 146312
>dbj|AK107305.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-D01, full insert sequence Length = 1247 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 4 cacacatgcgcccaagggagca 25 |||||||||||||||||||||| Sbjct: 38 cacacatgcgcccaagggagca 17
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 341 ctcggcctgcccgtcgagttcg 362 |||||||||||||||||||||| Sbjct: 489954 ctcggcctgcccgtcgagttcg 489975 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 tccgcgccccgctctggcacggcc 89 |||||||||||||| ||||||||| Sbjct: 1828359 tccgcgccccgctcaggcacggcc 1828382
>gb|CP000146.1| Rhodobacter sphaeroides 2.4.1 plasmid C, complete sequence Length = 105284 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 cacggccgcctccacgcgccg 103 ||||||||||||||||||||| Sbjct: 93945 cacggccgcctccacgcgccg 93925
>ref|XM_823572.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.02.3690) partial mRNA Length = 966 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 ccgccgctccctcccctccgc 121 ||||||||||||||||||||| Sbjct: 556 ccgccgctccctcccctccgc 576
>ref|XM_811213.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506613.80) partial mRNA Length = 744 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 407 gtgggcctcaccgcgctgctgctgg 431 |||||||||||||||| |||||||| Sbjct: 571 gtgggcctcaccgcgcggctgctgg 595
>ref|XM_816609.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508873.50) partial mRNA Length = 456 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 407 gtgggcctcaccgcgctgctgctgg 431 |||||||||||||||| |||||||| Sbjct: 56 gtgggcctcaccgcgcagctgctgg 80
>emb|AL845439.5| Human DNA sequence from clone DAQB-215D11 on chromosome 6 Contains 3' end of C6orf12 for chromosome 6 open reading frame 12, ETF1P1 for eukaryotic translation termination factor 1 pseudogene 1, ZNRD1 for zinc ribbon domain containing, 1, PPP1R11 for protein phosphatase 1, regulatory (inhibitor) subunit 11, RNF39 for ring finger protein 39 and 3 CpG islands, complete sequence Length = 74764 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 ccgccgctccctcccctccgc 121 ||||||||||||||||||||| Sbjct: 49591 ccgccgctccctcccctccgc 49611
>emb|BX088647.3| Human DNA sequence from clone DASS-90B3 on chromosome 6, complete sequence Length = 100183 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 ccgccgctccctcccctccgc 121 ||||||||||||||||||||| Sbjct: 68433 ccgccgctccctcccctccgc 68453
>emb|AL671859.3| Human DNA sequence from clone XXbac-218N7 on chromosome 6 contains the 5' end of the gene for HTEX4, 4.3 and 6, a eukaryotic translation termination factor 1 (ETF1) pseudogene, the ZNRD1 gene for zinc ribbon domain containing 1, the PPP1R11 gene for protein phosphatase 1, regulatory (inhibitor) subunit 11, the HZFW1 gene for HZFW1 protein, the TRIM31, TRIM40 and TRIM10 genes for tripartite motif-containing 31,40 and 10 and four CpG islands, complete sequence Length = 144169 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 ccgccgctccctcccctccgc 121 ||||||||||||||||||||| Sbjct: 54410 ccgccgctccctcccctccgc 54430
>emb|AL669914.2| Human DNA sequence from clone XXbac-250I8 on chromosome 6 contains a major histocompatibility complex, class I, J pseudogene, the gene for HCGVIII protein, the genes for HTEX4, 4.3 and 6, a eukaryotic translation termination factor 1 (ETF1) pseudogene, the ZNRD1 gene for zinc ribbon domain containing, 1 , the PPP1R11 gene for protein phosphatase 1, regulatory (inhibitor) subunit 11, the HZFW1 gene for HZFW1 protein, the TRIM31 gene for tripartite motif containing 31, the TRIM40 gene for tripartite morif-containing 40, the TRIM10 gene for tripartite motif containing 10, the 5' end of the TRIM15 gene for tripartite motif-containing 15 and five CpG islands, complete sequence Length = 159178 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 ccgccgctccctcccctccgc 121 ||||||||||||||||||||| Sbjct: 69446 ccgccgctccctcccctccgc 69466
>ref|XM_965923.1| PREDICTED: Tribolium castaneum similar to protein kinase N2 (LOC659637), mRNA Length = 22080 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 274 gaaggccgccgccgagtccaacgcc 298 |||||||||||||||||||| |||| Sbjct: 13186 gaaggccgccgccgagtccatcgcc 13210
>emb|BX927229.6| Human DNA sequence from clone DAMA-377D17 on chromosome 6, complete sequence Length = 112627 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 ccgccgctccctcccctccgc 121 ||||||||||||||||||||| Sbjct: 106091 ccgccgctccctcccctccgc 106111
>emb|CR933538.3| Human DNA sequence from clone DADB-161G24 on chromosome 6, complete sequence Length = 3842 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 ccgccgctccctcccctccgc 121 ||||||||||||||||||||| Sbjct: 2295 ccgccgctccctcccctccgc 2315
>emb|CR759960.3| Human DNA sequence from clone DAAP-65D20 on chromosome 6, complete sequence Length = 97107 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 ccgccgctccctcccctccgc 121 ||||||||||||||||||||| Sbjct: 71977 ccgccgctccctcccctccgc 71997
>emb|CR759763.2| Human DNA sequence from clone DAMC-182C13 on chromosome 6, complete sequence Length = 110503 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 ccgccgctccctcccctccgc 121 ||||||||||||||||||||| Sbjct: 94196 ccgccgctccctcccctccgc 94216
>dbj|AB202082.1| Homo sapiens ZNRD1, PPP1R11, RNF39 genes for zinc ribbon domain containing, 1, protein phosphatase 1, regulatory (inhibitor) subunit 11, ring finger protein 39, complete cds Length = 45907 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 ccgccgctccctcccctccgc 121 ||||||||||||||||||||| Sbjct: 43437 ccgccgctccctcccctccgc 43457
>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region Length = 2229817 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 ccgccgctccctcccctccgc 121 ||||||||||||||||||||| Sbjct: 1867354 ccgccgctccctcccctccgc 1867334
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 cgctgccgccggtgccgctgc 323 ||||||||||||||||||||| Sbjct: 471830 cgctgccgccggtgccgctgc 471810
>dbj|AB088087.1| Homo sapiens HCGVII, HTEX4,HTEX6A, HCGV, HZFW1, HZFC2 genes Length = 45882 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 ccgccgctccctcccctccgc 121 ||||||||||||||||||||| Sbjct: 43412 ccgccgctccctcccctccgc 43432
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 376 cagcgagcggctcaacggcctcctggcca 404 |||||||||||| |||||| ||||||||| Sbjct: 3050274 cagcgagcggctgaacggcttcctggcca 3050246
>gb|U53588.1|HSU53588 Homo sapiens MHC class 1 region Length = 37160 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 ccgccgctccctcccctccgc 121 ||||||||||||||||||||| Sbjct: 4299 ccgccgctccctcccctccgc 4279
>gb|AC004201.1|AC004201 Homo sapiens clone UWGC:y2c163 from 6p21, complete sequence Length = 43284 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 ccgccgctccctcccctccgc 121 ||||||||||||||||||||| Sbjct: 27052 ccgccgctccctcccctccgc 27032
>dbj|AB023055.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region, clone:904J21, complete sequence Length = 162383 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 ccgccgctccctcccctccgc 121 ||||||||||||||||||||| Sbjct: 160775 ccgccgctccctcccctccgc 160755
>dbj|AB023054.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region, clone:679G22, complete sequence Length = 162383 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 ccgccgctccctcccctccgc 121 ||||||||||||||||||||| Sbjct: 160775 ccgccgctccctcccctccgc 160755
>gb|AC115786.8| Mus musculus chromosome 5, clone RP23-170E15, complete sequence Length = 193480 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 gaggccgctctccagccccttctc 54 ||||| |||||||||||||||||| Sbjct: 2395 gaggcagctctccagccccttctc 2372
>ref|XM_450308.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2553 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 caagaggaaggccgccgccg 287 |||||||||||||||||||| Sbjct: 2466 caagaggaaggccgccgccg 2485
>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0108E17, complete sequence Length = 139829 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gcgccgccgctccctcccct 117 |||||||||||||||||||| Sbjct: 21650 gcgccgccgctccctcccct 21669
>gb|AC117663.13| Mus musculus chromosome 5, clone RP23-354E8, complete sequence Length = 197426 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 31 gaggccgctctccagccccttctc 54 ||||| |||||||||||||||||| Sbjct: 22731 gaggcagctctccagccccttctc 22754
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 ccggtgccgctgcgggagcc 330 |||||||||||||||||||| Sbjct: 2427641 ccggtgccgctgcgggagcc 2427622
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 197 gagttcgagaagcgcgtcctgcagctga 224 |||||||||||||||| ||||| ||||| Sbjct: 2672884 gagttcgagaagcgcggcctgccgctga 2672911
>emb|AL133173.20| Human DNA sequence from clone RP11-453N3 on chromosome 10 Contains a RING finger protein 18 (RNF18) pseudogene, an actin-related protein 3 homolog (yeast) (ACTR3) pseudogene, a poly(A) cytoplasmic binding protein 3 (PABPC3) pseudogene, a gene for a novel protein similar to ATP-binding cassette sub-family D (ALD) member 1 (ABCD1), two novel genes and two CpG islands, complete sequence Length = 206192 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 tccctcccctccgcgcaagctctg 131 ||||||||||||| |||||||||| Sbjct: 185865 tccctcccctccgtgcaagctctg 185842
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 cggtcggccctcggcctgcc 351 |||||||||||||||||||| Sbjct: 230608 cggtcggccctcggcctgcc 230589
>emb|AL663001.3|OSJN00197 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022P19, complete sequence Length = 135836 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gctgccgccggtgccgctgc 323 |||||||||||||||||||| Sbjct: 19073 gctgccgccggtgccgctgc 19054
>dbj|AB218279.1| Gallus gallus NR5A2 gene for liver receptor homolog-1, partial cds Length = 12065 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gccgccgctccctcccctcc 119 |||||||||||||||||||| Sbjct: 7362 gccgccgctccctcccctcc 7343
>gb|AC023721.3| Drosophila melanogaster X BAC RP98-5L4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 166902 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 gcgctgctgctggtggagct 438 |||||||||||||||||||| Sbjct: 118772 gcgctgctgctggtggagct 118753
>tpg|BK002800.1| TPA: TPA_inf: Drosophila melanogaster HDC15303 (HDC15303) gene, complete cds Length = 6269 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 cgctgccgccggtgccgctg 322 |||||||||||||||||||| Sbjct: 6200 cgctgccgccggtgccgctg 6219
>ref|NM_170110.2| Drosophila melanogaster Krueppel target at 95D CG5405-RC, transcript variant C (KrT95D), mRNA Length = 3965 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 cgctgccgccggtgccgctg 322 |||||||||||||||||||| Sbjct: 432 cgctgccgccggtgccgctg 413
>ref|NM_170108.2| Drosophila melanogaster Krueppel target at 95D CG5405-RB, transcript variant B (KrT95D), mRNA Length = 4091 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 cgctgccgccggtgccgctg 322 |||||||||||||||||||| Sbjct: 432 cgctgccgccggtgccgctg 413
>gb|AF394181.1| Chlamydomonas reinhardtii coiled-coil flagellar protein (MBO2) gene, complete cds Length = 7026 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 87 gccgcctccacgcgccgccgctcc 110 ||||||||||| |||||||||||| Sbjct: 1185 gccgcctccacccgccgccgctcc 1162
>ref|NM_132569.1| Drosophila melanogaster CG11245-RA (CG11245), mRNA Length = 4638 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 gcgctgctgctggtggagct 438 |||||||||||||||||||| Sbjct: 4352 gcgctgctgctggtggagct 4333
>ref|NM_079749.4| Drosophila melanogaster Krueppel target at 95D CG5405-RA, transcript variant A (KrT95D), mRNA Length = 4335 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 cgctgccgccggtgccgctg 322 |||||||||||||||||||| Sbjct: 676 cgctgccgccggtgccgctg 657
>gb|AY075356.1| Drosophila melanogaster GM03043 full length cDNA Length = 1257 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 cgctgccgccggtgccgctg 322 |||||||||||||||||||| Sbjct: 676 cgctgccgccggtgccgctg 657
>dbj|AK158266.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched library, clone:F930049D18 product:mutated in colorectal cancers, full insert sequence Length = 3459 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 cgctgctgctggtggagctc 439 |||||||||||||||||||| Sbjct: 2610 cgctgctgctggtggagctc 2591
>gb|AC169375.4| Sorghum bicolor clone SB_BBc0020O07, complete sequence Length = 117931 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 cgctgctgctggtggagctc 439 |||||||||||||||||||| Sbjct: 1176 cgctgctgctggtggagctc 1195
>gb|AC022352.5|AC022352 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0034E23, from chromosome 10, complete sequence Length = 139398 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 97 cgcgccgccgctccctcccctccgcgca 124 |||||||| ||||||||||||| ||||| Sbjct: 126757 cgcgccgcggctccctcccctcggcgca 126730
>dbj|AK054528.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN full-length enriched library, clone:E330037C19 product:COLORECTAL MUTANT CANCER PROTEIN (MCC PROTEIN) homolog [Homo sapiens], full insert sequence Length = 2848 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 cgctgctgctggtggagctc 439 |||||||||||||||||||| Sbjct: 2580 cgctgctgctggtggagctc 2561
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 97 cgcgccgccgctccctcccctccgcgca 124 |||||||| ||||||||||||| ||||| Sbjct: 7820878 cgcgccgcggctccctcccctcggcgca 7820851
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 caagaggaaggccgccgccg 287 |||||||||||||||||||| Sbjct: 4020219 caagaggaaggccgccgccg 4020200
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gcgccgccgctccctcccct 117 |||||||||||||||||||| Sbjct: 24952797 gcgccgccgctccctcccct 24952816
>gb|AC008202.4|AC008202 Drosophila melanogaster, chromosome 3R, region 95C-95D, BAC clone BACR15J11, complete sequence Length = 186159 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 cgctgccgccggtgccgctg 322 |||||||||||||||||||| Sbjct: 99137 cgctgccgccggtgccgctg 99156
>gb|AY119444.1| Drosophila melanogaster AT03104 full insert cDNA Length = 3920 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 cgctgccgccggtgccgctg 322 |||||||||||||||||||| Sbjct: 432 cgctgccgccggtgccgctg 413
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 68 cgcgccccgctctggcacggccgc 91 ||||||||| |||||||||||||| Sbjct: 869769 cgcgccccggtctggcacggccgc 869746
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 ccgccgagtccaacgccgtc 301 |||||||||||||||||||| Sbjct: 2885624 ccgccgagtccaacgccgtc 2885643
>dbj|AP005738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0066C12 Length = 168874 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 caagaggaaggccgccgccg 287 |||||||||||||||||||| Sbjct: 3700 caagaggaaggccgccgccg 3681
>dbj|AP005590.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0574F11 Length = 159891 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 caagaggaaggccgccgccg 287 |||||||||||||||||||| Sbjct: 151731 caagaggaaggccgccgccg 151712
>dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0104B02 Length = 169588 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gctgccgccggtgccgctgc 323 |||||||||||||||||||| Sbjct: 88158 gctgccgccggtgccgctgc 88139
>emb|AJ322805.1|HSA322805 Homo sapiens genomic sequence surrounding NotI site, clone NR1-PI17C Length = 677 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 gcgctgctgctggtggagct 438 |||||||||||||||||||| Sbjct: 377 gcgctgctgctggtggagct 396
>gb|AE003745.4| Drosophila melanogaster chromosome 3R, section 83 of 118 of the complete sequence Length = 230236 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 cgctgccgccggtgccgctg 322 |||||||||||||||||||| Sbjct: 229025 cgctgccgccggtgccgctg 229044
>gb|AE003489.2| Drosophila melanogaster chromosome X, section 41 of 74 of the complete sequence Length = 291799 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 gcgctgctgctggtggagct 438 |||||||||||||||||||| Sbjct: 115333 gcgctgctgctggtggagct 115314
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 97 cgcgccgccgctccctcccctccgcgca 124 |||||||| ||||||||||||| ||||| Sbjct: 7825977 cgcgccgcggctccctcccctcggcgca 7825950
>gb|AC147551.5| Mus musculus BAC clone RP23-77G5 from 18, complete sequence Length = 275269 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 cgctgctgctggtggagctc 439 |||||||||||||||||||| Sbjct: 155257 cgctgctgctggtggagctc 155238
>emb|X84734.1|PVGAM1B P.vivax GAM1 gene Length = 4979 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 tggcgaggccgctctccagc 46 |||||||||||||||||||| Sbjct: 2552 tggcgaggccgctctccagc 2533 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,130,578 Number of Sequences: 3902068 Number of extensions: 3130578 Number of successful extensions: 75289 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73450 Number of HSP's gapped (non-prelim): 1839 length of query: 439 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 417 effective length of database: 17,147,199,772 effective search space: 7150382304924 effective search space used: 7150382304924 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)