ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet97b05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY307424.1| Pan paniscus strain NG05253A-Coriell sonic hedgehog (shh) gene, promoter region and 5' UTR Length = 611 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cggctcgcccgctcgctctc 149 |||||||||||||||||||| Sbjct: 497 cggctcgcccgctcgctctc 478
>gb|AY307423.1| Pan troglodytes sonic hedgehog (shh) gene, promoter region and 5' UTR Length = 1400 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cggctcgcccgctcgctctc 149 |||||||||||||||||||| Sbjct: 1286 cggctcgcccgctcgctctc 1267
>gb|AY307422.1| Gorilla gorilla clone 1 sonic hedgehog (shh) gene, promoter region and 5' UTR Length = 1394 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cggctcgcccgctcgctctc 149 |||||||||||||||||||| Sbjct: 1280 cggctcgcccgctcgctctc 1261
>gb|AY307421.1| Gorilla gorilla strain NG05251B-Coriell sonic hedgehog (shh) gene, promoter region and 5' UTR Length = 1394 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cggctcgcccgctcgctctc 149 |||||||||||||||||||| Sbjct: 1280 cggctcgcccgctcgctctc 1261
>gb|AC078834.5| Homo sapiens BAC clone RP11-69O3 from 7, complete sequence Length = 154737 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 cggctcgcccgctcgctctc 149 |||||||||||||||||||| Sbjct: 104043 cggctcgcccgctcgctctc 104062
>gb|AY422195.1| Homo sapiens sonic hedgehog homolog (Drosophila) (SHH) gene, complete cds Length = 13414 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cggctcgcccgctcgctctc 149 |||||||||||||||||||| Sbjct: 2038 cggctcgcccgctcgctctc 2019
>ref|NM_000193.2| Homo sapiens sonic hedgehog homolog (Drosophila) (SHH), mRNA Length = 1576 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cggctcgcccgctcgctctc 149 |||||||||||||||||||| Sbjct: 40 cggctcgcccgctcgctctc 21
>gb|AC147335.2| Pan troglodytes BAC clone RP43-4C1 from chromosome 7, complete sequence Length = 186272 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cggctcgcccgctcgctctc 149 |||||||||||||||||||| Sbjct: 18733 cggctcgcccgctcgctctc 18714
>emb|Z62882.1|HS74G11R H.sapiens CpG island DNA genomic Mse1 fragment, clone 74g11, reverse read cpg74g11.rt1a Length = 274 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cggctcgcccgctcgctctc 149 |||||||||||||||||||| Sbjct: 202 cggctcgcccgctcgctctc 183
>gb|AC002484.1|AC002484 Human cosmid clone LL157A05 from 7q36, complete sequence Length = 48469 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 cggctcgcccgctcgctctc 149 |||||||||||||||||||| Sbjct: 18427 cggctcgcccgctcgctctc 18446
>gb|L38518.1|HUMSHH Homo sapiens sonic hedgehog protein (SHH) mRNA, complete cds Length = 1576 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cggctcgcccgctcgctctc 149 |||||||||||||||||||| Sbjct: 40 cggctcgcccgctcgctctc 21
>dbj|AB020410.1| Homo sapiens gene for sonic hedgehog (shh), promoter region and partial cds Length = 717 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cggctcgcccgctcgctctc 149 |||||||||||||||||||| Sbjct: 591 cggctcgcccgctcgctctc 572
>dbj|AB077763.1| Halocynthia roretzi bwTnI, cTnI genes for adult body-wall muscle troponin I, adult cardiac troponin I, complete cds Length = 17338 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 ctctcggtttcttcctcctc 164 |||||||||||||||||||| Sbjct: 11853 ctctcggtttcttcctcctc 11834
>dbj|AB077758.1| Halocynthia roretzi cTnI mRNA for cardiac troponin I, complete cds Length = 1053 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 ctctcggtttcttcctcctc 164 |||||||||||||||||||| Sbjct: 118 ctctcggtttcttcctcctc 99 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 774,383 Number of Sequences: 3902068 Number of extensions: 774383 Number of successful extensions: 17309 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17295 Number of HSP's gapped (non-prelim): 14 length of query: 262 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 240 effective length of database: 17,147,199,772 effective search space: 4115327945280 effective search space used: 4115327945280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
