ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet97a11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full... 258 1e-65
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 133 5e-28
3gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- a... 133 5e-28
4dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic D... 133 5e-28
5ref|XM_464784.1| Oryza sativa (japonica cultivar-group), mRNA 117 3e-23
6gb|AC149694.2| Bos taurus BAC CH240-423C21 (Children's Hospital... 46 0.094
7gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, compl... 46 0.094
8gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, comp... 46 0.094
9gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, comple... 46 0.094
10gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5,... 46 0.094
11gb|AC150482.2| Bos taurus BAC CH240-308E11 (Children's Hospital... 44 0.37
12gb|AC146967.3| Bos taurus clone RP42-279M12, complete sequence 42 1.5
13gb|AC149676.2| Bos taurus BAC CH240-43C16 (Children's Hospital ... 42 1.5
14gb|AC150664.2| Bos taurus BAC CH240-244O10 (Children's Hospital... 42 1.5
15gb|AC150888.5| Bos taurus BAC CH240-475A10 (Children's Hospital... 42 1.5
16gb|AC150524.3| Bos taurus BAC CH240-89P8 (Children's Hospital O... 42 1.5
17gb|AC150635.4| Bos taurus BAC CH240-448P19 (Children's Hospital... 42 1.5
18gb|AC150881.4| Bos taurus BAC CH240-354J15 (Children's Hospital... 42 1.5
19gb|AC149783.2| Bos taurus BAC CH240-3K17 (Children's Hospital O... 42 1.5
20gb|AC150548.2| Bos taurus BAC CH240-72J19 (Children's Hospital ... 42 1.5
21gb|AC149762.2| Bos taurus BAC CH240-123C23 (Children's Hospital... 42 1.5
22gb|AC149763.5| Bos taurus BAC CH240-53K11 (Children's Hospital ... 42 1.5
23gb|AY582740.1| Chlamydomonas reinhardtii Fe-hydrogenase assembly... 42 1.5
24gb|DP000008.1| Bos taurus target 1 genomic scaffold 42 1.5
25gb|AY644518.1| Bos taurus T cell receptor gamma gene, partial se... 42 1.5
26gb|AC156980.9| Mus musculus chromosome 1, clone RP23-191A12, com... 42 1.5
27gb|AC009464.8| Homo sapiens 12 BAC RP11-19E18 (Roswell Park Canc... 42 1.5
28gb|AY227782.3| Bos taurus T cell receptor alpha (TCRA) gene, J s... 42 1.5
29gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, comp... 40 5.8
30gb|AC150653.5| Bos taurus BAC CH240-226L9 (Children's Hospital ... 40 5.8
31gb|AC150694.2| Bos taurus BAC CH240-144A17 (Children's Hospital... 40 5.8
32gb|AC150690.7| Bos taurus BAC CH240-151A24 (Children's Hospital... 40 5.8
33gb|AC150919.6| Bos taurus BAC CH240-303F16 (Children's Hospital... 40 5.8
34gb|AC149716.2| Bos taurus BAC CH240-31B10 (Children's Hospital ... 40 5.8
35gb|AC149717.2| Bos taurus BAC CH240-194N8 (Children's Hospital ... 40 5.8
36gb|AC091252.3| Bos taurus clone RP42-324C24, complete sequence 40 5.8
37gb|AC087860.2| Bos taurus clone RP42-135P2, complete sequence 40 5.8
38gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, c... 40 5.8
39emb|X85078.1|BTIGA63 B.taurus cosmid-derived microsatellite DNA ... 40 5.8
40gb|AY644517.2| Bos taurus T cell receptor gamma (TCRG) gene, par... 40 5.8
41emb|AL137140.12| Human DNA sequence from clone RP11-137M6 on chr... 40 5.8
42gb|AC011558.6| Homo sapiens chromosome 19 clone LLNLR-291F12, co... 40 5.8
43gb|AC148763.14| Medicago truncatula clone mth2-29o24, complete s... 40 5.8
44gb|AC104148.5| Drosophila melanogaster X BAC RP98-34O3 (Roswell ... 40 5.8
45gb|AC104145.7| Drosophila melanogaster X BAC RP98-30B1 (Roswell ... 40 5.8
46gb|AC093066.2| Homo sapiens chromosome 19 clone LLNLR-237C1, com... 40 5.8
47gb|AC093597.3| Homo sapiens BAC clone RP11-187O17 from 4, comple... 40 5.8
48emb|X02974.2|DMWHITE Drosophila melanogaster white locus 40 5.8
49gb|AF355400.1|AF355400 Bos taurus breed Hanwoo daily gain AFLP m... 40 5.8
50gb|AC148038.3| Ovis aries clone CH243-361I2, complete sequence 40 5.8
51gb|AC113610.4| Homo sapiens BAC clone RP11-373H2 from 2, complet... 40 5.8
52gb|AE003425.3| Drosophila melanogaster chromosome X, section 9 o... 40 5.8
53gb|AF142686.1| Cyclolobium nutans maturase-like protein (matK) g... 40 5.8
54gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 5.8
55emb|AL133506.2|DMBN33B1 Drosophila melanogaster BAC clone BACN33B1 40 5.8
56emb|AJ342722.1|HSA342722 Homo sapiens genomic sequence surroundi... 40 5.8 
>gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full insert mRNA
           sequence
          Length = 936

 Score =  258 bits (130), Expect = 1e-65
 Identities = 150/157 (95%)
 Strand = Plus / Minus

                                                                       
Query: 273 ccgacgccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatct 332
           ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 660 ccgacgccaacttacggcactacaccgacgccatcttacggcactacaccgacgccatct 601

                                                                       
Query: 333 tacggcactacaccgagcaccccaagtacaccttcccatgaagtccctgncagtccaaag 392
           ||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||
Sbjct: 600 tacggcactacaccgagcaccccaagtacaccttcccatgatgtccctgcaagtccaaag 541

                                                
Query: 393 aagcatggattcattggatcctgcgacttctggaaga 429
           |||||||| ||||||||||||||||||| ||||||||
Sbjct: 540 aagcatgggttcattggatcctgcgactactggaaga 504



 Score =  242 bits (122), Expect = 8e-61
 Identities = 154/165 (93%), Gaps = 6/165 (3%)
 Strand = Plus / Minus

                                                                       
Query: 184 cccactatgggggctcaccaactccctcgcatgggtcaggaggaggctacaacccgacac 243
           |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 767 cccactatgggggctcaccaactcccacgcatgggtcaggaggaggctacaatccgacac 708

                                                                       
Query: 244 cgacaccaacttacggtactacaccaacgccgacgccatcttacggcactacaccgacgc 303
           |||||||||||||||| ||||||      |||||||||||||||||||||||||||||||
Sbjct: 707 cgacaccaacttacggcactaca------ccgacgccatcttacggcactacaccgacgc 654

                                                        
Query: 304 catcttatggcactacaccgacgccatcttacggcactacaccga 348
           || |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 653 caacttacggcactacaccgacgccatcttacggcactacaccga 609



 Score =  200 bits (101), Expect = 3e-48
 Identities = 136/147 (92%), Gaps = 3/147 (2%)
 Strand = Plus / Minus

                                                                       
Query: 21  ttcagttcagttgcttattctgttgtctactccgcacatactgagagcaagatgggtggc 80
           |||||||||||||||||||||||   ||   | ||||| |||||||||||||||||||||
Sbjct: 909 ttcagttcagttgcttattctgt---cttgcctgcacacactgagagcaagatgggtggc 853

                                                                       
Query: 81  aaggttcttctgatgagtgctgtcttggtggggcttgtttcactgagctcctgcaggagc 140
           |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 852 aaggttcttctgatcagtgccgtcttggtggggcttgtttcactgagctcgtgcaggagc 793

                                      
Query: 141 ctgggagagttgcatgagcagaagacc 167
           |||||||||||||||||||||||||||
Sbjct: 792 ctgggagagttgcatgagcagaagacc 766
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  133 bits (67), Expect = 5e-28
 Identities = 122/139 (87%), Gaps = 1/139 (0%)
 Strand = Plus / Minus

                                                                           
Query: 44      tgtctactccgcacatactgagagc-aagatgggtggcaaggttcttctgatgagtgctg 102
               ||||| ||| ||| ||||||||||| |||||| || |||||||||||||||| |||| ||
Sbjct: 7324237 tgtcttctctgcagatactgagagccaagatgagtagcaaggttcttctgatcagtggtg 7324178

                                                                           
Query: 103     tcttggtggggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcaga 162
               || ||||||||||  |||| |||||||| |||||||||||||||||||||  ||| ||||
Sbjct: 7324177 tcctggtggggctcctttctctgagctcatgcaggagcctgggagagttgtctgaacaga 7324118

                                  
Query: 163     agacctactcttcttctac 181
               |||||||||||||| ||||
Sbjct: 7324117 agacctactcttctactac 7324099



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                           
Query: 264     acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 323
               |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 7323735 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 7323676

                                      
Query: 324     acgccatcttacggcactacacc 346
               || ||||||||||||||||||||
Sbjct: 7323675 acaccatcttacggcactacacc 7323653



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                           
Query: 279     ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 338
               |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 7323696 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 7323637

                                          
Query: 339     actacaccgagcaccccaagtacacct 365
               || ||||| |||||||| || ||||||
Sbjct: 7323636 acgacaccaagcacccccagcacacct 7323610



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 240     acaccgacaccaacttacggtactacaccaac 271
               ||||| |||||| ||||||| |||||||||||
Sbjct: 7323681 acaccaacaccatcttacggcactacaccaac 7323650
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>gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- and threonine-rich
           protein mRNA, complete cds
          Length = 902

 Score =  133 bits (67), Expect = 5e-28
 Identities = 122/139 (87%), Gaps = 1/139 (0%)
 Strand = Plus / Plus

                                                                       
Query: 44  tgtctactccgcacatactgagagc-aagatgggtggcaaggttcttctgatgagtgctg 102
           ||||| ||| ||| ||||||||||| |||||| || |||||||||||||||| |||| ||
Sbjct: 36  tgtcttctctgcagatactgagagccaagatgagtagcaaggttcttctgatcagtggtg 95

                                                                       
Query: 103 tcttggtggggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcaga 162
           || ||||||||||  |||| |||||||| |||||||||||||||||||||  ||| ||||
Sbjct: 96  tcctggtggggctcctttctctgagctcatgcaggagcctgggagagttgtctgaacaga 155

                              
Query: 163 agacctactcttcttctac 181
           |||||||||||||| ||||
Sbjct: 156 agacctactcttctactac 174



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                       
Query: 264 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 323
           |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 230 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 289

                                  
Query: 324 acgccatcttacggcactacacc 346
           || ||||||||||||||||||||
Sbjct: 290 acaccatcttacggcactacacc 312



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 76/87 (87%)
 Strand = Plus / Plus

                                                                       
Query: 279 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 338
           |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 269 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 328

                                      
Query: 339 actacaccgagcaccccaagtacacct 365
           || ||||| ||| |||| || ||||||
Sbjct: 329 acgacaccaagctcccccagcacacct 355



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 240 acaccgacaccaacttacggtactacaccaac 271
           ||||| |||||| ||||||| |||||||||||
Sbjct: 284 acaccaacaccatcttacggcactacaccaac 315
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>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBb0035N08
          Length = 136267

 Score =  133 bits (67), Expect = 5e-28
 Identities = 122/139 (87%), Gaps = 1/139 (0%)
 Strand = Plus / Minus

                                                                          
Query: 44     tgtctactccgcacatactgagagc-aagatgggtggcaaggttcttctgatgagtgctg 102
              ||||| ||| ||| ||||||||||| |||||| || |||||||||||||||| |||| ||
Sbjct: 100045 tgtcttctctgcagatactgagagccaagatgagtagcaaggttcttctgatcagtggtg 99986

                                                                          
Query: 103    tcttggtggggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcaga 162
              || ||||||||||  |||| |||||||| |||||||||||||||||||||  ||| ||||
Sbjct: 99985  tcctggtggggctcctttctctgagctcatgcaggagcctgggagagttgtctgaacaga 99926

                                 
Query: 163    agacctactcttcttctac 181
              |||||||||||||| ||||
Sbjct: 99925  agacctactcttctactac 99907



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                         
Query: 264   acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 323
             |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 99543 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 99484

                                    
Query: 324   acgccatcttacggcactacacc 346
             || ||||||||||||||||||||
Sbjct: 99483 acaccatcttacggcactacacc 99461



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                         
Query: 279   ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 338
             |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 99504 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 99445

                                        
Query: 339   actacaccgagcaccccaagtacacct 365
             || ||||| |||||||| || ||||||
Sbjct: 99444 acgacaccaagcacccccagcacacct 99418



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 240   acaccgacaccaacttacggtactacaccaac 271
             ||||| |||||| ||||||| |||||||||||
Sbjct: 99489 acaccaacaccatcttacggcactacaccaac 99458
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>ref|XM_464784.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 660

 Score =  117 bits (59), Expect = 3e-23
 Identities = 92/103 (89%)
 Strand = Plus / Plus

                                                                       
Query: 79  gcaaggttcttctgatgagtgctgtcttggtggggcttgtttcactgagctcctgcagga 138
           |||||||||||||||| |||| |||| ||||||||||  |||| |||||||| |||||||
Sbjct: 8   gcaaggttcttctgatcagtggtgtcctggtggggctcctttctctgagctcatgcagga 67

                                                      
Query: 139 gcctgggagagttgcatgagcagaagacctactcttcttctac 181
           ||||||||||||||  ||| |||||||||||||||||| ||||
Sbjct: 68  gcctgggagagttgtctgaacagaagacctactcttctactac 110



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                       
Query: 279 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 338
           |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 205 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 264

                                      
Query: 339 actacaccgagcaccccaagtacacct 365
           || ||||| |||||||| || ||||||
Sbjct: 265 acgacaccaagcacccccagcacacct 291



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                       
Query: 264 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 323
           |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 166 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 225

                                  
Query: 324 acgccatcttacggcactacacc 346
           || ||||||||||||||||||||
Sbjct: 226 acaccatcttacggcactacacc 248



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 240 acaccgacaccaacttacggtactacaccaac 271
           ||||| |||||| ||||||| |||||||||||
Sbjct: 220 acaccaacaccatcttacggcactacaccaac 251
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>gb|AC149694.2| Bos taurus  BAC CH240-423C21 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 186118

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 15    catcagttcagttcagttgctta 37
             |||||||||||||||||||||||
Sbjct: 94906 catcagttcagttcagttgctta 94884
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>gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 386   tccaaagaagcatggattcattg 408
             |||||||||||||||||||||||
Sbjct: 29024 tccaaagaagcatggattcattg 29046
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>gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 386   tccaaagaagcatggattcattg 408
             |||||||||||||||||||||||
Sbjct: 29024 tccaaagaagcatggattcattg 29046
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>gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, complete sequence
          Length = 133790

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 386   tccaaagaagcatggattcattg 408
             |||||||||||||||||||||||
Sbjct: 43691 tccaaagaagcatggattcattg 43669
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>gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5, complete sequence
          Length = 203043

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 386   tccaaagaagcatggattcattg 408
             |||||||||||||||||||||||
Sbjct: 91385 tccaaagaagcatggattcattg 91407
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>gb|AC150482.2| Bos taurus  BAC CH240-308E11 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 179880

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 14     ccatcagttcagttcagttgct 35
              ||||||||||||||||||||||
Sbjct: 173498 ccatcagttcagttcagttgct 173477
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>gb|AC146967.3| Bos taurus clone RP42-279M12, complete sequence
          Length = 186611

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 17     tcagttcagttcagttgctta 37
              |||||||||||||||||||||
Sbjct: 137390 tcagttcagttcagttgctta 137370
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>gb|AC149676.2| Bos taurus  BAC CH240-43C16 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 168416

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 17    tcagttcagttcagttgctta 37
             |||||||||||||||||||||
Sbjct: 46669 tcagttcagttcagttgctta 46689
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>gb|AC150664.2| Bos taurus  BAC CH240-244O10 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 158286

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 12    ctccatcagttcagttcagtt 32
             |||||||||||||||||||||
Sbjct: 33900 ctccatcagttcagttcagtt 33880



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     atcagttcagttcagttgct 35
              ||||||||||||||||||||
Sbjct: 155147 atcagttcagttcagttgct 155166
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>gb|AC150888.5| Bos taurus  BAC CH240-475A10 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 186059

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 17     tcagttcagttcagttgctta 37
              |||||||||||||||||||||
Sbjct: 176307 tcagttcagttcagttgctta 176327



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    atcagttcagttcagttgct 35
             ||||||||||||||||||||
Sbjct: 48268 atcagttcagttcagttgct 48287
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>gb|AC150524.3| Bos taurus  BAC CH240-89P8 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 189720

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    catcagttcagttcagttgct 35
             |||||||||||||||||||||
Sbjct: 46442 catcagttcagttcagttgct 46422
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>gb|AC150635.4| Bos taurus  BAC CH240-448P19 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 151766

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    catcagttcagttcagttgct 35
             |||||||||||||||||||||
Sbjct: 56798 catcagttcagttcagttgct 56778
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>gb|AC150881.4| Bos taurus  BAC CH240-354J15 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 174996

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 17     tcagttcagttcagttgctta 37
              |||||||||||||||||||||
Sbjct: 134756 tcagttcagttcagttgctta 134776
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>gb|AC149783.2| Bos taurus  BAC CH240-3K17 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 205084

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    catcagttcagttcagttgct 35
             |||||||||||||||||||||
Sbjct: 13297 catcagttcagttcagttgct 13317
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>gb|AC150548.2| Bos taurus  BAC CH240-72J19 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 176133

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 17    tcagttcagttcagttgctta 37
             |||||||||||||||||||||
Sbjct: 17799 tcagttcagttcagttgctta 17779



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 17     tcagttcagttcagttgcttattc 40
              ||||||||||||||||||| ||||
Sbjct: 117834 tcagttcagttcagttgctcattc 117811
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>gb|AC149762.2| Bos taurus  BAC CH240-123C23 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 187366

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 12     ctccatcagttcagttcagtt 32
              |||||||||||||||||||||
Sbjct: 139758 ctccatcagttcagttcagtt 139738



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    atcagttcagttcagttgct 35
             ||||||||||||||||||||
Sbjct: 97856 atcagttcagttcagttgct 97837
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>gb|AC149763.5| Bos taurus  BAC CH240-53K11 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 160327

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    catcagttcagttcagttgct 35
             |||||||||||||||||||||
Sbjct: 77503 catcagttcagttcagttgct 77483
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>gb|AY582740.1| Chlamydomonas reinhardtii Fe-hydrogenase assembly protein (HydG)
           mRNA, complete cds
          Length = 1704

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 346 cgagcaccccaagtacacctt 366
           |||||||||||||||||||||
Sbjct: 675 cgagcaccccaagtacacctt 695
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>gb|DP000008.1| Bos taurus target 1 genomic scaffold
          Length = 2072671

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 17      tcagttcagttcagttgctta 37
               |||||||||||||||||||||
Sbjct: 2023450 tcagttcagttcagttgctta 2023430



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 16      atcagttcagttcagttgct 35
               ||||||||||||||||||||
Sbjct: 1560478 atcagttcagttcagttgct 1560459



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     atcagttcagttcagttgct 35
              ||||||||||||||||||||
Sbjct: 668530 atcagttcagttcagttgct 668549
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>gb|AY644518.1| Bos taurus T cell receptor gamma gene, partial sequence
          Length = 188109

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 17    tcagttcagttcagttgctta 37
             |||||||||||||||||||||
Sbjct: 48277 tcagttcagttcagttgctta 48257
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>gb|AC156980.9| Mus musculus chromosome 1, clone RP23-191A12, complete sequence
          Length = 224673

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 73     tgggtggcaaggttcttctgatgag 97
              ||||||||||||||| |||||||||
Sbjct: 168930 tgggtggcaaggttcatctgatgag 168954
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>gb|AC009464.8| Homo sapiens 12 BAC RP11-19E18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 146945

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 9     catctccatcagttcagttcagttg 33
             ||||||||| |||||||||||||||
Sbjct: 77081 catctccatgagttcagttcagttg 77057
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>gb|AY227782.3| Bos taurus T cell receptor alpha (TCRA) gene, J segments and C region
          Length = 141711

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    catcagttcagttcagttgct 35
             |||||||||||||||||||||
Sbjct: 88582 catcagttcagttcagttgct 88602
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>gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, complete sequence
          Length = 256158

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 362    accttcccatgaagtccctg 381
              ||||||||||||||||||||
Sbjct: 115173 accttcccatgaagtccctg 115192
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>gb|AC150653.5| Bos taurus  BAC CH240-226L9 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 158246

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    atcagttcagttcagttgct 35
             ||||||||||||||||||||
Sbjct: 66489 atcagttcagttcagttgct 66470
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>gb|AC150694.2| Bos taurus  BAC CH240-144A17 (Children's Hospital Oakland Research
            Institute Bovine BAC Library (male)) complete sequence
          Length = 163920

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 16   atcagttcagttcagttgct 35
            ||||||||||||||||||||
Sbjct: 3668 atcagttcagttcagttgct 3687
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>gb|AC150690.7| Bos taurus  BAC CH240-151A24 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 194641

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     atcagttcagttcagttgct 35
              ||||||||||||||||||||
Sbjct: 171946 atcagttcagttcagttgct 171965
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>gb|AC150919.6| Bos taurus  BAC CH240-303F16 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 160376

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    atcagttcagttcagttgct 35
             ||||||||||||||||||||
Sbjct: 79558 atcagttcagttcagttgct 79539
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>gb|AC149716.2| Bos taurus  BAC CH240-31B10 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 171707

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    atcagttcagttcagttgct 35
             ||||||||||||||||||||
Sbjct: 11668 atcagttcagttcagttgct 11649
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>gb|AC149717.2| Bos taurus  BAC CH240-194N8 (Children's Hospital Oakland Research
            Institute Bovine BAC Library (male)) complete sequence
          Length = 140707

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 16   atcagttcagttcagttgct 35
            ||||||||||||||||||||
Sbjct: 2691 atcagttcagttcagttgct 2710
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>gb|AC091252.3| Bos taurus clone RP42-324C24, complete sequence
          Length = 183383

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    atcagttcagttcagttgct 35
             ||||||||||||||||||||
Sbjct: 40262 atcagttcagttcagttgct 40243
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>gb|AC087860.2| Bos taurus clone RP42-135P2, complete sequence
          Length = 203696

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    atcagttcagttcagttgct 35
             ||||||||||||||||||||
Sbjct: 78026 atcagttcagttcagttgct 78045
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>gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, complete sequence
          Length = 183075

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    tgcttattctgttgtctact 51
             ||||||||||||||||||||
Sbjct: 86325 tgcttattctgttgtctact 86344
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>emb|X85078.1|BTIGA63 B.taurus cosmid-derived microsatellite DNA (clone IDVGA-63)
          Length = 514

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  atcagttcagttcagttgct 35
           ||||||||||||||||||||
Sbjct: 179 atcagttcagttcagttgct 198
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>gb|AY644517.2| Bos taurus T cell receptor gamma (TCRG) gene, partial sequence
          Length = 243699

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    atcagttcagttcagttgct 35
             ||||||||||||||||||||
Sbjct: 75589 atcagttcagttcagttgct 75608
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>emb|AL137140.12| Human DNA sequence from clone RP11-137M6 on chromosome 13q21.33-22.3
             Contains the SCEL gene for sciellin, a novel gene and a
             CpG island, complete sequence
          Length = 193098

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    tcagttcagttcagttgctt 36
             ||||||||||||||||||||
Sbjct: 20370 tcagttcagttcagttgctt 20389
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>gb|AC011558.6| Homo sapiens chromosome 19 clone LLNLR-291F12, complete sequence
          Length = 43128

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   ctcctgcaggagcctgggag 147
             ||||||||||||||||||||
Sbjct: 42852 ctcctgcaggagcctgggag 42833
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>gb|AC148763.14| Medicago truncatula clone mth2-29o24, complete sequence
          Length = 104879

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   aacccgacaccgacaccaac 253
             ||||||||||||||||||||
Sbjct: 15886 aacccgacaccgacaccaac 15867
to top
>gb|AC104148.5| Drosophila melanogaster X BAC RP98-34O3 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 181395

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    tcagttcagttcagttgctt 36
             ||||||||||||||||||||
Sbjct: 13291 tcagttcagttcagttgctt 13310
to top
>gb|AC104145.7| Drosophila melanogaster X BAC RP98-30B1 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 161569

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     tcagttcagttcagttgctt 36
              ||||||||||||||||||||
Sbjct: 139380 tcagttcagttcagttgctt 139399
to top
>gb|AC093066.2| Homo sapiens chromosome 19 clone LLNLR-237C1, complete sequence
          Length = 5054

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 128  ctcctgcaggagcctgggag 147
            ||||||||||||||||||||
Sbjct: 1337 ctcctgcaggagcctgggag 1318
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>gb|AC093597.3| Homo sapiens BAC clone RP11-187O17 from 4, complete sequence
          Length = 17211

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   accttcccatgaagtccctg 381
             ||||||||||||||||||||
Sbjct: 10846 accttcccatgaagtccctg 10827
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>emb|X02974.2|DMWHITE Drosophila melanogaster white locus
          Length = 14247

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 17   tcagttcagttcagttgctt 36
            ||||||||||||||||||||
Sbjct: 4154 tcagttcagttcagttgctt 4135
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>gb|AF355400.1|AF355400 Bos taurus breed Hanwoo daily gain AFLP marker, genomic sequence
          Length = 135

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  atcagttcagttcagttgct 35
           ||||||||||||||||||||
Sbjct: 110 atcagttcagttcagttgct 129
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>gb|AC148038.3| Ovis aries clone CH243-361I2, complete sequence
          Length = 198973

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 12    ctccatcagttcagttcagttgct 35
             |||| |||||||||||||||||||
Sbjct: 27973 ctccctcagttcagttcagttgct 27950
to top
>gb|AC113610.4| Homo sapiens BAC clone RP11-373H2 from 2, complete sequence
          Length = 96559

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 373   aagtccctgncagtccaaagaag 395
             ||||||||| |||||||||||||
Sbjct: 26570 aagtccctggcagtccaaagaag 26592
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>gb|AE003425.3| Drosophila melanogaster chromosome X, section 9 of 74 of the complete
              sequence
          Length = 309053

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     tcagttcagttcagttgctt 36
              ||||||||||||||||||||
Sbjct: 165984 tcagttcagttcagttgctt 166003
to top
>gb|AF142686.1| Cyclolobium nutans maturase-like protein (matK) gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 2503

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 388 caaagaagcatggattcattggat 411
           |||||||||| |||||||||||||
Sbjct: 701 caaagaagcagggattcattggat 678
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 390     aagaagcatggattcattgg 409
               ||||||||||||||||||||
Sbjct: 2827466 aagaagcatggattcattgg 2827485
to top
>emb|AL133506.2|DMBN33B1 Drosophila melanogaster BAC clone BACN33B1
          Length = 45752

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    tcagttcagttcagttgctt 36
             ||||||||||||||||||||
Sbjct: 41837 tcagttcagttcagttgctt 41856
to top
>emb|AJ342722.1|HSA342722 Homo sapiens genomic sequence surrounding NotI site, clone NR1-JG2R
          Length = 788

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 128 ctcctgcaggagcctgggag 147
           ||||||||||||||||||||
Sbjct: 467 ctcctgcaggagcctgggag 448


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,982,439
Number of Sequences: 3902068
Number of extensions: 2982439
Number of successful extensions: 65401
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64687
Number of HSP's gapped (non-prelim): 699
length of query: 430
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 408
effective length of database: 17,147,199,772
effective search space: 6996057506976
effective search space used: 6996057506976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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