ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet97a04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK106043.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 2e-46
2dbj|AK065358.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 2e-46
3dbj|AK059056.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 2e-46
4ref|NM_191551.1| Oryza sativa (japonica cultivar-group), predic... 192 6e-46
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
6dbj|AP003309.3| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
7dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
8emb|AL691513.13| Mouse DNA sequence from clone RP23-451C8 on chr... 44 0.34
9gb|AC157903.3| Mus musculus chromosome 18, clone RP23-341E18, co... 42 1.4
10gb|AC134581.5| Mus musculus BAC clone RP24-90L20 from chromosome... 42 1.4
11gb|AC163394.4| Mus musculus chromosome 15, clone RP24-241D13, co... 42 1.4
12gb|AC102847.3| Mus musculus, clone RP24-406I1, complete sequence 42 1.4
13emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete ... 42 1.4
14gb|AC145332.48| Felis catus clone rp86-207p24, complete sequence 42 1.4
15gb|AC103808.2| Homo sapiens chromosome 18, clone RP11-94B19, com... 42 1.4
16dbj|AK022038.1| Homo sapiens cDNA FLJ11976 fis, clone HEMBB1001253 42 1.4
17gb|AC102162.6| Mus musculus chromosome 18, clone RP23-419P4, com... 42 1.4
18gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 42 1.4
19gb|AC165090.3| Mus musculus BAC clone RP23-95H4 from chromosome ... 40 5.4
20gb|AC004989.1| Homo sapiens PAC clone RP5-1179J19 from 7, comple... 40 5.4
21emb|AL162417.23| Human DNA sequence from clone RP11-326L24 on ch... 40 5.4
22emb|BX640424.1| Bordetella parapertussis strain 12822, complete ... 40 5.4
23gb|AC107623.2| Homo sapiens chromosome 3 clone RP11-648C16, comp... 40 5.4
24gb|AC096970.2| Homo sapiens chromosome 3 clone RP11-321A23, comp... 40 5.4
25gb|AC024560.26| Homo sapiens 3 BAC RP11-496H1 (Roswell Park Canc... 40 5.4
26gb|AC024937.21| Homo sapiens 3 BAC RP11-480A16 (Roswell Park Can... 40 5.4
27gb|AC124944.8| Homo sapiens 3 BAC RP11-352G9 (Roswell Park Cance... 40 5.4
28gb|AF333038.2| Streptomyces viridochromogenes Avilamycin A biosy... 40 5.4
29gb|AC002319.1|AC002319 Homo sapiens chromosome 9q34, clone 70C11... 40 5.4
30gb|AC131680.4| Mus musculus BAC clone RP23-346F8 from 8, complet... 40 5.4
31gb|AC001643.1|AC001643 Genomic sequence from Human 9q34, complet... 40 5.4 
>dbj|AK106043.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-E03, full
           insert sequence
          Length = 1617

 Score =  194 bits (98), Expect = 2e-46
 Identities = 232/276 (84%), Gaps = 3/276 (1%)
 Strand = Plus / Plus

                                                                       
Query: 112 ctccatggataggctcgtcgcagccggcattcttgccttcctactgatcgcgtcggtagg 171
           |||||||||||||||| ||||   | || | |||| ||||||  ||||||| || |||||
Sbjct: 71  ctccatggataggctcctcgc---ctgcctccttggcttcctgttgatcgcttcagtagg 127

                                                                       
Query: 172 aagccatgcagctcgtgctccggggcaatactgggagtctgctcttcccaacactcccat 231
           ||||||||| |||||  |||||| |||||||||| | || |||||||||||| |||||||
Sbjct: 128 aagccatgccgctcggactccggagcaatactggaaatcagctcttcccaactctcccat 187

                                                                       
Query: 232 gccaagctccctctctcaactcctcgacacgcaagccggaggcacgtcggtgaacgtcgg 291
            || ||||| |||||||| || |||  |||   || ||||||||||||||||||||||||
Sbjct: 188 cccgagctcgctctctcagcttctcagcactgcaggcggaggcacgtcggtgaacgtcgg 247

                                                                       
Query: 292 ctcgggcggcgtccatgtcgacgcgggccatgggatgcctgggggcacgacggtcgatgt 351
           |  |||||||||||||||||||||||| || || | ||| || ||||| || || |||||
Sbjct: 248 cgggggcggcgtccatgtcgacgcggggcacggcaagcccggcggcacaaccgttgatgt 307

                                               
Query: 352 gggcaagggtggcgtcggcgtcaacgtgaagcctgg 387
            |||||||||||||||||||| ||||||||||||||
Sbjct: 308 aggcaagggtggcgtcggcgtgaacgtgaagcctgg 343



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 356 aagggtggcgtcggcgtcaacgtgaagcc 384
           ||||| |||||||||||||||||||||||
Sbjct: 588 aagggcggcgtcggcgtcaacgtgaagcc 616
to top
>dbj|AK065358.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013011A15, full
           insert sequence
          Length = 1618

 Score =  194 bits (98), Expect = 2e-46
 Identities = 232/276 (84%), Gaps = 3/276 (1%)
 Strand = Plus / Plus

                                                                       
Query: 112 ctccatggataggctcgtcgcagccggcattcttgccttcctactgatcgcgtcggtagg 171
           |||||||||||||||| ||||   | || | |||| ||||||  ||||||| || |||||
Sbjct: 72  ctccatggataggctcctcgc---ctgcctccttggcttcctgttgatcgcttcagtagg 128

                                                                       
Query: 172 aagccatgcagctcgtgctccggggcaatactgggagtctgctcttcccaacactcccat 231
           ||||||||| |||||  |||||| |||||||||| | || |||||||||||| |||||||
Sbjct: 129 aagccatgccgctcggactccggagcaatactggaaatcagctcttcccaactctcccat 188

                                                                       
Query: 232 gccaagctccctctctcaactcctcgacacgcaagccggaggcacgtcggtgaacgtcgg 291
            || ||||| |||||||| || |||  |||   || ||||||||||||||||||||||||
Sbjct: 189 cccgagctcgctctctcagcttctcagcactgcaggcggaggcacgtcggtgaacgtcgg 248

                                                                       
Query: 292 ctcgggcggcgtccatgtcgacgcgggccatgggatgcctgggggcacgacggtcgatgt 351
           |  |||||||||||||||||||||||| || || | ||| || ||||| || || |||||
Sbjct: 249 cgggggcggcgtccatgtcgacgcggggcacggcaagcccggcggcacaaccgttgatgt 308

                                               
Query: 352 gggcaagggtggcgtcggcgtcaacgtgaagcctgg 387
            |||||||||||||||||||| ||||||||||||||
Sbjct: 309 aggcaagggtggcgtcggcgtgaacgtgaagcctgg 344



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 356 aagggtggcgtcggcgtcaacgtgaagcc 384
           ||||| |||||||||||||||||||||||
Sbjct: 589 aagggcggcgtcggcgtcaacgtgaagcc 617
to top
>dbj|AK059056.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-F04, full
           insert sequence
          Length = 1616

 Score =  194 bits (98), Expect = 2e-46
 Identities = 232/276 (84%), Gaps = 3/276 (1%)
 Strand = Plus / Plus

                                                                       
Query: 112 ctccatggataggctcgtcgcagccggcattcttgccttcctactgatcgcgtcggtagg 171
           |||||||||||||||| ||||   | || | |||| ||||||  ||||||| || |||||
Sbjct: 63  ctccatggataggctcctcgc---ctgcctccttggcttcctgttgatcgcttcagtagg 119

                                                                       
Query: 172 aagccatgcagctcgtgctccggggcaatactgggagtctgctcttcccaacactcccat 231
           ||||||||| |||||  |||||| |||||||||| | || |||||||||||| |||||||
Sbjct: 120 aagccatgccgctcggactccggagcaatactggaaatcagctcttcccaactctcccat 179

                                                                       
Query: 232 gccaagctccctctctcaactcctcgacacgcaagccggaggcacgtcggtgaacgtcgg 291
            || ||||| |||||||| || |||  |||   || ||||||||||||||||||||||||
Sbjct: 180 cccgagctcgctctctcagcttctcagcactgcaggcggaggcacgtcggtgaacgtcgg 239

                                                                       
Query: 292 ctcgggcggcgtccatgtcgacgcgggccatgggatgcctgggggcacgacggtcgatgt 351
           |  |||||||||||||||||||||||| || || | ||| || ||||| || || |||||
Sbjct: 240 cgggggcggcgtccatgtcgacgcggggcacggcaagcccggcggcacaaccgttgatgt 299

                                               
Query: 352 gggcaagggtggcgtcggcgtcaacgtgaagcctgg 387
            |||||||||||||||||||| ||||||||||||||
Sbjct: 300 aggcaagggtggcgtcggcgtgaacgtgaagcctgg 335



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 356 aagggtggcgtcggcgtcaacgtgaagcc 384
           ||||| |||||||||||||||||||||||
Sbjct: 580 aagggcggcgtcggcgtcaacgtgaagcc 608
to top
>ref|NM_191551.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1290

 Score =  192 bits (97), Expect = 6e-46
 Identities = 208/245 (84%)
 Strand = Plus / Plus

                                                                       
Query: 143 cttgccttcctactgatcgcgtcggtaggaagccatgcagctcgtgctccggggcaatac 202
           |||| ||||||  ||||||| || |||||||||||||| |||||  |||||| |||||||
Sbjct: 25  cttggcttcctgttgatcgcttcagtaggaagccatgccgctcggactccggagcaatac 84

                                                                       
Query: 203 tgggagtctgctcttcccaacactcccatgccaagctccctctctcaactcctcgacacg 262
           ||| | || |||||||||||| ||||||| || ||||| |||||||| || |||  ||| 
Sbjct: 85  tggaaatcagctcttcccaactctcccatcccgagctcgctctctcagcttctcagcact 144

                                                                       
Query: 263 caagccggaggcacgtcggtgaacgtcggctcgggcggcgtccatgtcgacgcgggccat 322
             || |||||||||||||||||||||||||  |||||||||||||||||||||||| || 
Sbjct: 145 gcaggcggaggcacgtcggtgaacgtcggcgggggcggcgtccatgtcgacgcggggcac 204

                                                                       
Query: 323 gggatgcctgggggcacgacggtcgatgtgggcaagggtggcgtcggcgtcaacgtgaag 382
           || | ||| || ||||| || || ||||| |||||||||||||||||||| |||||||||
Sbjct: 205 ggcaagcccggcggcacaaccgttgatgtaggcaagggtggcgtcggcgtgaacgtgaag 264

                
Query: 383 cctgg 387
           |||||
Sbjct: 265 cctgg 269



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 356 aagggtggcgtcggcgtcaacgtgaagcc 384
           ||||| |||||||||||||||||||||||
Sbjct: 514 aagggcggcgtcggcgtcaacgtgaagcc 542
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  135 bits (68), Expect = 1e-28
 Identities = 107/120 (89%)
 Strand = Plus / Plus

                                                                            
Query: 268      cggaggcacgtcggtgaacgtcggctcgggcggcgtccatgtcgacgcgggccatgggat 327
                |||||||||||||||||||||||||  |||||||||||||||||||||||| || || | 
Sbjct: 30584378 cggaggcacgtcggtgaacgtcggcgggggcggcgtccatgtcgacgcggggcacggcaa 30584437

                                                                            
Query: 328      gcctgggggcacgacggtcgatgtgggcaagggtggcgtcggcgtcaacgtgaagcctgg 387
                ||| || ||||| || || ||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 30584438 gcccggcggcacaaccgttgatgtaggcaagggtggcgtcggcgtgaacgtgaagcctgg 30584497



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                            
Query: 157      gatcgcgtcggtaggaagccatgcagctcgtgctccggggcaatactgggagtctgctct 216
                |||||| || |||||||||||||| |||||  |||||| |||||||||| | || |||||
Sbjct: 30583798 gatcgcttcagtaggaagccatgccgctcggactccggagcaatactggaaatcagctct 30583857

                                                 
Query: 217      tcccaacactcccatgccaagctccctctctca 249
                ||||||| ||||||| || ||||| ||||||||
Sbjct: 30583858 tcccaactctcccatcccgagctcgctctctca 30583890



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 356      aagggtggcgtcggcgtcaacgtgaagcc 384
                ||||| |||||||||||||||||||||||
Sbjct: 30584742 aagggcggcgtcggcgtcaacgtgaagcc 30584770
to top
>dbj|AP003309.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0036G09
          Length = 124118

 Score =  135 bits (68), Expect = 1e-28
 Identities = 107/120 (89%)
 Strand = Plus / Plus

                                                                         
Query: 268   cggaggcacgtcggtgaacgtcggctcgggcggcgtccatgtcgacgcgggccatgggat 327
             |||||||||||||||||||||||||  |||||||||||||||||||||||| || || | 
Sbjct: 66982 cggaggcacgtcggtgaacgtcggcgggggcggcgtccatgtcgacgcggggcacggcaa 67041

                                                                         
Query: 328   gcctgggggcacgacggtcgatgtgggcaagggtggcgtcggcgtcaacgtgaagcctgg 387
             ||| || ||||| || || ||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 67042 gcccggcggcacaaccgttgatgtaggcaagggtggcgtcggcgtgaacgtgaagcctgg 67101



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                         
Query: 157   gatcgcgtcggtaggaagccatgcagctcgtgctccggggcaatactgggagtctgctct 216
             |||||| || |||||||||||||| |||||  |||||| |||||||||| | || |||||
Sbjct: 66402 gatcgcttcagtaggaagccatgccgctcggactccggagcaatactggaaatcagctct 66461

                                              
Query: 217   tcccaacactcccatgccaagctccctctctca 249
             ||||||| ||||||| || ||||| ||||||||
Sbjct: 66462 tcccaactctcccatcccgagctcgctctctca 66494



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 356   aagggtggcgtcggcgtcaacgtgaagcc 384
             ||||| |||||||||||||||||||||||
Sbjct: 67346 aagggcggcgtcggcgtcaacgtgaagcc 67374
to top
>dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1060H01
          Length = 157987

 Score =  135 bits (68), Expect = 1e-28
 Identities = 107/120 (89%)
 Strand = Plus / Plus

                                                                         
Query: 268   cggaggcacgtcggtgaacgtcggctcgggcggcgtccatgtcgacgcgggccatgggat 327
             |||||||||||||||||||||||||  |||||||||||||||||||||||| || || | 
Sbjct: 26655 cggaggcacgtcggtgaacgtcggcgggggcggcgtccatgtcgacgcggggcacggcaa 26714

                                                                         
Query: 328   gcctgggggcacgacggtcgatgtgggcaagggtggcgtcggcgtcaacgtgaagcctgg 387
             ||| || ||||| || || ||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 26715 gcccggcggcacaaccgttgatgtaggcaagggtggcgtcggcgtgaacgtgaagcctgg 26774



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                         
Query: 157   gatcgcgtcggtaggaagccatgcagctcgtgctccggggcaatactgggagtctgctct 216
             |||||| || |||||||||||||| |||||  |||||| |||||||||| | || |||||
Sbjct: 26075 gatcgcttcagtaggaagccatgccgctcggactccggagcaatactggaaatcagctct 26134

                                              
Query: 217   tcccaacactcccatgccaagctccctctctca 249
             ||||||| ||||||| || ||||| ||||||||
Sbjct: 26135 tcccaactctcccatcccgagctcgctctctca 26167



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 356   aagggtggcgtcggcgtcaacgtgaagcc 384
             ||||| |||||||||||||||||||||||
Sbjct: 27019 aagggcggcgtcggcgtcaacgtgaagcc 27047
to top
>emb|AL691513.13| Mouse DNA sequence from clone RP23-451C8 on chromosome X, complete
             sequence
          Length = 121936

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 94    gctgccctctgccctgccctcc 115
             ||||||||||||||||||||||
Sbjct: 19015 gctgccctctgccctgccctcc 19036
to top
>gb|AC157903.3| Mus musculus chromosome 18, clone RP23-341E18, complete sequence
          Length = 198984

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 99    cctctgccctgccctccatgg 119
             |||||||||||||||||||||
Sbjct: 89203 cctctgccctgccctccatgg 89223
to top
>gb|AC134581.5| Mus musculus BAC clone RP24-90L20 from chromosome 8, complete sequence
          Length = 201483

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 86     tcctcattgctgccctctgcc 106
              |||||||||||||||||||||
Sbjct: 104523 tcctcattgctgccctctgcc 104503
to top
>gb|AC163394.4| Mus musculus chromosome 15, clone RP24-241D13, complete sequence
          Length = 154751

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 228   ccatgccaagctccctctctc 248
             |||||||||||||||||||||
Sbjct: 77707 ccatgccaagctccctctctc 77727
to top
>gb|AC102847.3| Mus musculus, clone RP24-406I1, complete sequence
          Length = 146259

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 228   ccatgccaagctccctctctc 248
             |||||||||||||||||||||
Sbjct: 10116 ccatgccaagctccctctctc 10136
to top
>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29
          Length = 303550

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 299    ggcgtccatgtcgacgcgggccatg 323
              ||||||||||||| |||||||||||
Sbjct: 275597 ggcgtccatgtcggcgcgggccatg 275621
to top
>gb|AC145332.48| Felis catus clone rp86-207p24, complete sequence
          Length = 165072

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 96    tgccctctgccctgccctcca 116
             |||||||||||||||||||||
Sbjct: 52191 tgccctctgccctgccctcca 52171
to top
>gb|AC103808.2| Homo sapiens chromosome 18, clone RP11-94B19, complete sequence
          Length = 152722

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 96    tgccctctgccctgccctcca 116
             |||||||||||||||||||||
Sbjct: 22839 tgccctctgccctgccctcca 22859
to top
>dbj|AK022038.1| Homo sapiens cDNA FLJ11976 fis, clone HEMBB1001253
          Length = 3174

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 93  tgctgccctctgccctgccct 113
           |||||||||||||||||||||
Sbjct: 187 tgctgccctctgccctgccct 167
to top
>gb|AC102162.6| Mus musculus chromosome 18, clone RP23-419P4, complete sequence
          Length = 194165

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 99    cctctgccctgccctccatgg 119
             |||||||||||||||||||||
Sbjct: 97329 cctctgccctgccctccatgg 97309
to top
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 360    gtggcgtcggcgtcaacgtga 380
              |||||||||||||||||||||
Sbjct: 150874 gtggcgtcggcgtcaacgtga 150854
to top
>gb|AC165090.3| Mus musculus BAC clone RP23-95H4 from chromosome 8, complete sequence
          Length = 252334

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 193    ggggcaatactgggagtctg 212
              ||||||||||||||||||||
Sbjct: 156303 ggggcaatactgggagtctg 156322
to top
>gb|AC004989.1| Homo sapiens PAC clone RP5-1179J19 from 7, complete sequence
          Length = 85058

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     tcgagtcctggaacatctcctctt 25
             |||||||||||||||| |||||||
Sbjct: 71922 tcgagtcctggaacatttcctctt 71945
to top
>emb|AL162417.23| Human DNA sequence from clone RP11-326L24 on chromosome 9q34.13-34.3
              Contains the GTF3C5 gene for general transcription factor
              IIIC polypeptide 5 63kDa, the CEL gene for carboxyl ester
              lipase (bile salt-stimulated lipase), the CELP gene for
              carboxyl ester lipase pseudogene, the RALGDS gene for ral
              guanine nucleotide dissociation stimulator, the gene for
              Forssman glycolipid synthetase (FS), three novel genes and
              six CpG islands, complete sequence
          Length = 152863

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     tgctgccctctgccctgccc 112
              ||||||||||||||||||||
Sbjct: 119706 tgctgccctctgccctgccc 119725
to top
>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14
          Length = 349146

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 94     gctgccctctgccctgccctccat 117
              ||||||||| ||||||||||||||
Sbjct: 328111 gctgccctcggccctgccctccat 328088
to top
>gb|AC107623.2| Homo sapiens chromosome 3 clone RP11-648C16, complete sequence
          Length = 176901

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    tgccgtcagcttcctcattg 94
             ||||||||||||||||||||
Sbjct: 73263 tgccgtcagcttcctcattg 73244
to top
>gb|AC096970.2| Homo sapiens chromosome 3 clone RP11-321A23, complete sequence
          Length = 171297

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 75   tgccgtcagcttcctcattg 94
            ||||||||||||||||||||
Sbjct: 5190 tgccgtcagcttcctcattg 5209
to top
>gb|AC024560.26| Homo sapiens 3 BAC RP11-496H1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164595

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     ctgccctctgccctgccctc 114
              ||||||||||||||||||||
Sbjct: 124562 ctgccctctgccctgccctc 124543
to top
>gb|AC024937.21| Homo sapiens 3 BAC RP11-480A16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 157198

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    ctgccctctgccctgccctc 114
             ||||||||||||||||||||
Sbjct: 60287 ctgccctctgccctgccctc 60306



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  ctgccctctgccctgccctc 114
           ||||||||||||||||||||
Sbjct: 771 ctgccctctgccctgccctc 790
to top
>gb|AC124944.8| Homo sapiens 3 BAC RP11-352G9 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 121914

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 95   ctgccctctgccctgccctc 114
            ||||||||||||||||||||
Sbjct: 1275 ctgccctctgccctgccctc 1256
to top
>gb|AF333038.2| Streptomyces viridochromogenes Avilamycin A biosynthetic gene cluster,
             complete sequence
          Length = 59816

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   ggtgaacgtcggctcgggcg 299
             ||||||||||||||||||||
Sbjct: 42394 ggtgaacgtcggctcgggcg 42413
to top
>gb|AC002319.1|AC002319 Homo sapiens chromosome 9q34, clone 70C11, complete sequence
          Length = 46305

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    tgctgccctctgccctgccc 112
             ||||||||||||||||||||
Sbjct: 44281 tgctgccctctgccctgccc 44262
to top
>gb|AC131680.4| Mus musculus BAC clone RP23-346F8 from 8, complete sequence
          Length = 198162

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    ggggcaatactgggagtctg 212
              ||||||||||||||||||||
Sbjct: 160771 ggggcaatactgggagtctg 160752
to top
>gb|AC001643.1|AC001643 Genomic sequence from Human 9q34, complete sequence
          Length = 40203

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    tgctgccctctgccctgccc 112
             ||||||||||||||||||||
Sbjct: 20582 tgctgccctctgccctgccc 20601


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,725,337
Number of Sequences: 3902068
Number of extensions: 2725337
Number of successful extensions: 60506
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60375
Number of HSP's gapped (non-prelim): 124
length of query: 401
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 379
effective length of database: 17,147,199,772
effective search space: 6498788713588
effective search space used: 6498788713588
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top