ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet96h11 |
|---|---|
| Clone Library Name | barley_pub |
>STHX_ARATH (Q9LQZ7) Putative salt tolerance-like protein At1g75540| Length = 331 Score = 55.1 bits (131), Expect = 4e-08 Identities = 28/58 (48%), Positives = 32/58 (55%) Frame = +1 Query: 154 MKVQCDVCAADAASVFXXXXXXXXXXXXXRRVHRANKLAGKHRRFSLLNPSLSQMPPP 327 MK++CDVC + ASVF +VH ANKLA KH RFSLL PS S P Sbjct: 1 MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSP 58
>STHY_ARATH (Q9SYM2) Putative salt tolerance-like protein At1g78600| Length = 299 Score = 43.5 bits (101), Expect = 1e-04 Identities = 23/56 (41%), Positives = 31/56 (55%) Frame = +1 Query: 154 MKVQCDVCAADAASVFXXXXXXXXXXXXXRRVHRANKLAGKHRRFSLLNPSLSQMP 321 MK+QC+VC A A+V ++H ANKLAGKH+R L+ S S +P Sbjct: 1 MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVP-LSASASSIP 55
>STH_ARATH (Q9SID1) Salt tolerance-like protein| Length = 238 Score = 40.0 bits (92), Expect = 0.001 Identities = 24/58 (41%), Positives = 28/58 (48%) Frame = +1 Query: 154 MKVQCDVCAADAASVFXXXXXXXXXXXXXRRVHRANKLAGKHRRFSLLNPSLSQMPPP 327 MK+QCDVC A++ VH ANKLA KH+R L SLS PP Sbjct: 1 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFL--DSLSTKFPP 56
>STO_ARATH (Q96288) Salt-tolerance protein| Length = 248 Score = 38.1 bits (87), Expect = 0.006 Identities = 19/47 (40%), Positives = 23/47 (48%) Frame = +1 Query: 154 MKVQCDVCAADAASVFXXXXXXXXXXXXXRRVHRANKLAGKHRRFSL 294 MK+QCDVC A+V +H ANKLA KH+R L Sbjct: 1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHL 47
>COL3_ARATH (Q9SK53) Zinc finger protein CONSTANS-LIKE 3| Length = 294 Score = 32.3 bits (72), Expect = 0.30 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +1 Query: 166 CDVCAADAASVFXXXXXXXXXXXXXRRVHRANKLAGKHRR 285 CD C + AA++F ++H ANKLA +H R Sbjct: 8 CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHER 47
>CONS_ARATH (Q39057) Zinc finger protein CONSTANS| Length = 373 Score = 31.6 bits (70), Expect = 0.52 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = +1 Query: 166 CDVCAADAASVFXXXXXXXXXXXXXRRVHRANKLAGKHRR 285 CD C ++A +V+ +VH AN++A +H+R Sbjct: 20 CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKR 59
>COL2_ARATH (Q96502) Zinc finger protein CONSTANS-LIKE 2| Length = 347 Score = 31.6 bits (70), Expect = 0.52 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = +1 Query: 166 CDVCAADAASVFXXXXXXXXXXXXXRRVHRANKLAGKHRR 285 CD C + A +V+ RVH AN++A +H R Sbjct: 16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHER 55
>COL1_ARATH (O50055) Zinc finger protein CONSTANS-LIKE 1| Length = 355 Score = 31.2 bits (69), Expect = 0.68 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = +1 Query: 166 CDVCAADAASVFXXXXXXXXXXXXXRRVHRANKLAGKHRR 285 CD C + A +V+ +VH AN+LA +H R Sbjct: 12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHER 51
>BAIP3_MOUSE (Q80TT2) BAI1-associated protein 3 (BAP3)| Length = 1134 Score = 30.8 bits (68), Expect = 0.89 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +3 Query: 48 PCTVATRTTGDPSPAESIDPHLGRREEIDREASIHHE 158 PC +G P+PAE +DP+ G R E + +E Sbjct: 68 PCPEVLLRSGSPAPAEPVDPNRGLRTLTQEEVEMLYE 104
>COL13_ARATH (O82256) Zinc finger protein CONSTANS-LIKE 13| Length = 332 Score = 30.4 bits (67), Expect = 1.2 Identities = 18/52 (34%), Positives = 25/52 (48%) Frame = +1 Query: 166 CDVCAADAASVFXXXXXXXXXXXXXRRVHRANKLAGKHRRFSLLNPSLSQMP 321 CD C + A V+ ++VH AN+L KH R SLL S ++ P Sbjct: 13 CDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFR-SLLCDSCNESP 63
>BAIP3_HUMAN (O94812) BAI1-associated protein 3 (BAP3)| Length = 1187 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = +3 Query: 48 PCTVATRTTGDPSPAESIDPHLGRREEIDREASIHHE 158 PC +G P+P E +DP LG R E + +E Sbjct: 105 PCLEVPLRSGSPAPPEPVDPSLGLRALAPEEVEMLYE 141
>COLX_ARATH (Q9C9F4) Putative zinc finger protein At1g68190| Length = 356 Score = 29.3 bits (64), Expect = 2.6 Identities = 16/54 (29%), Positives = 24/54 (44%) Frame = +1 Query: 154 MKVQCDVCAADAASVFXXXXXXXXXXXXXRRVHRANKLAGKHRRFSLLNPSLSQ 315 M+ C+ C A A V+ +VH AN L+G+H R L + +Q Sbjct: 10 MERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKNQ 63
>SYA_PYRAE (Q8ZSV6) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 892 Score = 29.3 bits (64), Expect = 2.6 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Frame = -2 Query: 213 VGAAEDGGGVGRA-------HVALHLHDGSTPPDRSPRVARDAGQCSRLAMDHP*YVLQL 55 +G + GGG + HV +H+ +G PP+ S V + D ++++ Sbjct: 541 IGILKHGGGAAKVVDVQRVGHVIVHVVEGEAPPEGSEVV-------GEIDWDRRYALMKM 593 Query: 54 YTATRVGVDSQRR 16 +T T V + S RR Sbjct: 594 HTGTHVLIQSIRR 606
>COL4_ARATH (Q940T9) Zinc finger protein CONSTANS-LIKE 4| Length = 362 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = +1 Query: 166 CDVCAADAASVFXXXXXXXXXXXXXRRVHRANKLAGKHRR 285 CD C + A+++ +VH ANKLA +H R Sbjct: 6 CDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHAR 45
>GBRB1_HUMAN (P18505) Gamma-aminobutyric-acid receptor beta-1 subunit precursor| (GABA(A) receptor) Length = 474 Score = 28.5 bits (62), Expect = 4.4 Identities = 18/52 (34%), Positives = 26/52 (50%) Frame = +1 Query: 10 SIPALAIYSYSSSRVQLQHVLRVIHRQPRALTRISGDARRSIGRRRSIMKVQ 165 S P +YSY S+ +Q + L RAL R ++ I RR S +KV+ Sbjct: 388 SDPKATMYSYDSASIQYRKPLSSREAYGRALDRHGVPSKGRIRRRASQLKVK 439
>NT5_RAT (P34131) Neurotrophin-5 precursor (NT-5) (Neutrophic factor 5)| (Neurotrophin-4) (NT-4) (Neutrophic factor 4) Length = 209 Score = 28.1 bits (61), Expect = 5.7 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -3 Query: 95 LGWRWITRSTCCNCTRL 45 +GWRWI T C CT L Sbjct: 187 VGWRWIRIDTACVCTLL 203
>NT5_MOUSE (Q80VU4) Neurotrophin-5 precursor (NT-5) (Neutrophic factor 5)| Length = 209 Score = 28.1 bits (61), Expect = 5.7 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -3 Query: 95 LGWRWITRSTCCNCTRL 45 +GWRWI T C CT L Sbjct: 187 VGWRWIRIDTACVCTLL 203
>DHX34_MOUSE (Q9DBV3) Probable ATP-dependent RNA helicase DHX34 (EC 3.6.1.-)| (DEAH box protein 34) Length = 1145 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = +1 Query: 85 RQPRALTRISGDARRSIGRRRSIMKVQCDVCAAD 186 R+ RAL ++ GRRR ++++Q D C++D Sbjct: 718 RERRALHQLKRQHEEGGGRRRKVLRLQEDGCSSD 751
>GBRB1_BOVIN (P08220) Gamma-aminobutyric-acid receptor beta-1 subunit precursor| (GABA(A) receptor) Length = 474 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = +1 Query: 16 PALAIYSYSSSRVQLQHVLRVIHRQPRALTRISGDARRSIGRRRSIMKVQ 165 P +YSY S+ +Q + + RAL R ++ I RR S +KV+ Sbjct: 390 PKTTMYSYDSASIQYRKPMSSREGYGRALDRHGAHSKGRIRRRASQLKVK 439
>NT4_XENLA (P24727) Neurotrophin-4 precursor (NT-4)| Length = 236 Score = 28.1 bits (61), Expect = 5.7 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -3 Query: 95 LGWRWITRSTCCNCTRL 45 +GWRWI T C CT L Sbjct: 214 VGWRWIRIDTACVCTLL 230
>NT5_HUMAN (P34130) Neurotrophin-5 precursor (NT-5) (Neutrophic factor 5)| (Neurotrophin-4) (NT-4) (Neutrophic factor 4) Length = 210 Score = 28.1 bits (61), Expect = 5.7 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -3 Query: 95 LGWRWITRSTCCNCTRL 45 +GWRWI T C CT L Sbjct: 188 VGWRWIRIDTACVCTLL 204
>DVL2_MOUSE (Q60838) Segment polarity protein dishevelled homolog DVL-2| (Dishevelled-2) (DSH homolog 2) Length = 736 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 216 LVGAAEDGGGVGRAHVALHLHDGSTP 139 + G++ GGGVG V HL + TP Sbjct: 1 MAGSSAGGGGVGETKVIYHLDEEETP 26
>DVL2_HUMAN (O14641) Segment polarity protein dishevelled homolog DVL-2| (Dishevelled-2) (DSH homolog 2) Length = 736 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 216 LVGAAEDGGGVGRAHVALHLHDGSTP 139 + G++ GGGVG V HL + TP Sbjct: 1 MAGSSTGGGGVGETKVIYHLDEEETP 26
>COL15_ARATH (Q9C7E8) Zinc finger protein CONSTANS-LIKE 15| Length = 433 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/43 (32%), Positives = 19/43 (44%) Frame = +1 Query: 157 KVQCDVCAADAASVFXXXXXXXXXXXXXRRVHRANKLAGKHRR 285 +V CD C A +F ++VH AN L+ KH R Sbjct: 6 RVPCDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVR 48
>COL10_ARATH (Q9LUA9) Zinc finger protein CONSTANS-LIKE 10| Length = 373 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/44 (29%), Positives = 17/44 (38%) Frame = +1 Query: 154 MKVQCDVCAADAASVFXXXXXXXXXXXXXRRVHRANKLAGKHRR 285 M CD C + V+ R VH AN L+ +H R Sbjct: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSR 44
>CEMA_MARPO (P12211) Chloroplast envelope membrane protein| Length = 434 Score = 27.3 bits (59), Expect = 9.8 Identities = 11/28 (39%), Positives = 20/28 (71%) Frame = +1 Query: 28 IYSYSSSRVQLQHVLRVIHRQPRALTRI 111 + +YSS+++QLQ + + IH+Q L +I Sbjct: 276 VMTYSSNKIQLQDLTKEIHQQTIELVQI 303 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,516,693 Number of Sequences: 219361 Number of extensions: 550259 Number of successful extensions: 1990 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 1957 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1988 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
