ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baet96h11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL606587.3|OSJN00022 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07, complete sequence Length = 143585 Score = 210 bits (106), Expect = 2e-51 Identities = 130/138 (94%) Strand = Plus / Plus Query: 153 catgaaggtgcagtgcgacgtgtgcgcggccgacgccgcctccgtcttctgctgcgccga 212 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 68594 catgaaggtgcagtgcgacgtgtgcgcggccgaggccgcctcggtcttctgctgcgccga 68653 Query: 213 cgaggccgcgctctgcgacgcgtgcgaccgccgcgtgcaccgcgccaacaagctcgccgg 272 |||||||||||| ||||||||||||||||||||||| ||| |||| |||||||||||||| Sbjct: 68654 cgaggccgcgctgtgcgacgcgtgcgaccgccgcgtccacagcgcgaacaagctcgccgg 68713 Query: 273 caagcaccgccgcttctc 290 ||||||||||| ||||| Sbjct: 68714 gaagcaccgccgattctc 68731
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 210 bits (106), Expect = 2e-51 Identities = 130/138 (94%) Strand = Plus / Plus Query: 153 catgaaggtgcagtgcgacgtgtgcgcggccgacgccgcctccgtcttctgctgcgccga 212 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 27000893 catgaaggtgcagtgcgacgtgtgcgcggccgaggccgcctcggtcttctgctgcgccga 27000952 Query: 213 cgaggccgcgctctgcgacgcgtgcgaccgccgcgtgcaccgcgccaacaagctcgccgg 272 |||||||||||| ||||||||||||||||||||||| ||| |||| |||||||||||||| Sbjct: 27000953 cgaggccgcgctgtgcgacgcgtgcgaccgccgcgtccacagcgcgaacaagctcgccgg 27001012 Query: 273 caagcaccgccgcttctc 290 ||||||||||| ||||| Sbjct: 27001013 gaagcaccgccgattctc 27001030 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Minus Query: 255 cgccaacaagctcgccggcaagcacc 280 |||||||||||||||| ||||||||| Sbjct: 24624348 cgccaacaagctcgccagcaagcacc 24624323 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 gcggccgacgccgcctccgtc 198 ||||||||||||||||||||| Sbjct: 1295298 gcggccgacgccgcctccgtc 1295318
>dbj|AK061333.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-A11, full insert sequence Length = 1220 Score = 210 bits (106), Expect = 2e-51 Identities = 130/138 (94%) Strand = Plus / Plus Query: 153 catgaaggtgcagtgcgacgtgtgcgcggccgacgccgcctccgtcttctgctgcgccga 212 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 197 catgaaggtgcagtgcgacgtgtgcgcggccgaggccgcctcggtcttctgctgcgccga 256 Query: 213 cgaggccgcgctctgcgacgcgtgcgaccgccgcgtgcaccgcgccaacaagctcgccgg 272 |||||||||||| ||||||||||||||||||||||| ||| |||| |||||||||||||| Sbjct: 257 cgaggccgcgctgtgcgacgcgtgcgaccgccgcgtccacagcgcgaacaagctcgccgg 316 Query: 273 caagcaccgccgcttctc 290 ||||||||||| ||||| Sbjct: 317 gaagcaccgccgattctc 334
>ref|XM_467034.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1199 Score = 208 bits (105), Expect = 8e-51 Identities = 138/149 (92%) Strand = Plus / Plus Query: 154 atgaaggtgcagtgcgacgtgtgcgcggccgacgccgcctccgtcttctgctgcgccgac 213 |||||||||||||||||||||||||||||||| || || || || ||||||||||||||| Sbjct: 172 atgaaggtgcagtgcgacgtgtgcgcggccgaggcggcgtcggtgttctgctgcgccgac 231 Query: 214 gaggccgcgctctgcgacgcgtgcgaccgccgcgtgcaccgcgccaacaagctcgccggc 273 ||||||||||| |||||||||||||||| ||| |||||||| ||||||||||||||||| Sbjct: 232 gaggccgcgctgtgcgacgcgtgcgaccaccgggtgcaccgggccaacaagctcgccggg 291 Query: 274 aagcaccgccgcttctcgctgctcaaccc 302 ||||||||||| ||||||||||||||||| Sbjct: 292 aagcaccgccggttctcgctgctcaaccc 320
>ref|XM_473353.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 753 Score = 208 bits (105), Expect = 8e-51 Identities = 129/137 (94%) Strand = Plus / Plus Query: 154 atgaaggtgcagtgcgacgtgtgcgcggccgacgccgcctccgtcttctgctgcgccgac 213 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 1 atgaaggtgcagtgcgacgtgtgcgcggccgaggccgcctcggtcttctgctgcgccgac 60 Query: 214 gaggccgcgctctgcgacgcgtgcgaccgccgcgtgcaccgcgccaacaagctcgccggc 273 ||||||||||| ||||||||||||||||||||||| ||| |||| |||||||||||||| Sbjct: 61 gaggccgcgctgtgcgacgcgtgcgaccgccgcgtccacagcgcgaacaagctcgccggg 120 Query: 274 aagcaccgccgcttctc 290 ||||||||||| ||||| Sbjct: 121 aagcaccgccgattctc 137
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 208 bits (105), Expect = 8e-51 Identities = 138/149 (92%) Strand = Plus / Plus Query: 154 atgaaggtgcagtgcgacgtgtgcgcggccgacgccgcctccgtcttctgctgcgccgac 213 |||||||||||||||||||||||||||||||| || || || || ||||||||||||||| Sbjct: 26046448 atgaaggtgcagtgcgacgtgtgcgcggccgaggcggcgtcggtgttctgctgcgccgac 26046507 Query: 214 gaggccgcgctctgcgacgcgtgcgaccgccgcgtgcaccgcgccaacaagctcgccggc 273 ||||||||||| |||||||||||||||| ||| |||||||| ||||||||||||||||| Sbjct: 26046508 gaggccgcgctgtgcgacgcgtgcgaccaccgggtgcaccgggccaacaagctcgccggg 26046567 Query: 274 aagcaccgccgcttctcgctgctcaaccc 302 ||||||||||| ||||||||||||||||| Sbjct: 26046568 aagcaccgccggttctcgctgctcaaccc 26046596
>dbj|AP004839.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0519A12 Length = 156676 Score = 208 bits (105), Expect = 8e-51 Identities = 138/149 (92%) Strand = Plus / Plus Query: 154 atgaaggtgcagtgcgacgtgtgcgcggccgacgccgcctccgtcttctgctgcgccgac 213 |||||||||||||||||||||||||||||||| || || || || ||||||||||||||| Sbjct: 53894 atgaaggtgcagtgcgacgtgtgcgcggccgaggcggcgtcggtgttctgctgcgccgac 53953 Query: 214 gaggccgcgctctgcgacgcgtgcgaccgccgcgtgcaccgcgccaacaagctcgccggc 273 ||||||||||| |||||||||||||||| ||| |||||||| ||||||||||||||||| Sbjct: 53954 gaggccgcgctgtgcgacgcgtgcgaccaccgggtgcaccgggccaacaagctcgccggg 54013 Query: 274 aagcaccgccgcttctcgctgctcaaccc 302 ||||||||||| ||||||||||||||||| Sbjct: 54014 aagcaccgccggttctcgctgctcaaccc 54042
>dbj|AP005306.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0030D07 Length = 133321 Score = 208 bits (105), Expect = 8e-51 Identities = 138/149 (92%) Strand = Plus / Plus Query: 154 atgaaggtgcagtgcgacgtgtgcgcggccgacgccgcctccgtcttctgctgcgccgac 213 |||||||||||||||||||||||||||||||| || || || || ||||||||||||||| Sbjct: 110321 atgaaggtgcagtgcgacgtgtgcgcggccgaggcggcgtcggtgttctgctgcgccgac 110380 Query: 214 gaggccgcgctctgcgacgcgtgcgaccgccgcgtgcaccgcgccaacaagctcgccggc 273 ||||||||||| |||||||||||||||| ||| |||||||| ||||||||||||||||| Sbjct: 110381 gaggccgcgctgtgcgacgcgtgcgaccaccgggtgcaccgggccaacaagctcgccggg 110440 Query: 274 aagcaccgccgcttctcgctgctcaaccc 302 ||||||||||| ||||||||||||||||| Sbjct: 110441 aagcaccgccggttctcgctgctcaaccc 110469
>dbj|AK071507.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090D24, full insert sequence Length = 1200 Score = 208 bits (105), Expect = 8e-51 Identities = 138/149 (92%) Strand = Plus / Plus Query: 154 atgaaggtgcagtgcgacgtgtgcgcggccgacgccgcctccgtcttctgctgcgccgac 213 |||||||||||||||||||||||||||||||| || || || || ||||||||||||||| Sbjct: 172 atgaaggtgcagtgcgacgtgtgcgcggccgaggcggcgtcggtgttctgctgcgccgac 231 Query: 214 gaggccgcgctctgcgacgcgtgcgaccgccgcgtgcaccgcgccaacaagctcgccggc 273 ||||||||||| |||||||||||||||| ||| |||||||| ||||||||||||||||| Sbjct: 232 gaggccgcgctgtgcgacgcgtgcgaccaccgggtgcaccgggccaacaagctcgccggg 291 Query: 274 aagcaccgccgcttctcgctgctcaaccc 302 ||||||||||| ||||||||||||||||| Sbjct: 292 aagcaccgccggttctcgctgctcaaccc 320
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 117 bits (59), Expect = 2e-23 Identities = 110/127 (86%) Strand = Plus / Plus Query: 159 ggtgcagtgcgacgtgtgcgcggccgacgccgcctccgtcttctgctgcgccgacgaggc 218 ||||||||||||||| ||||| ||||| | ||| | || ||||||||||||||||||| Sbjct: 29680387 ggtgcagtgcgacgtctgcgccgccgagccggccgcggtgctctgctgcgccgacgaggc 29680446 Query: 219 cgcgctctgcgacgcgtgcgaccgccgcgtgcaccgcgccaacaagctcgccggcaagca 278 |||||||||| ||| |||||||||||||| |||||||||||| |||||| ||||||| Sbjct: 29680447 cgcgctctgctccgcctgcgaccgccgcgtccaccgcgccaaccgcctcgccagcaagca 29680506 Query: 279 ccgccgc 285 ||||||| Sbjct: 29680507 ccgccgc 29680513 Score = 54.0 bits (27), Expect = 3e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 202 tgctgcgccgacgaggccgcgctctgcgacgcgtgcgaccgccgcgtgcaccgcgccaac 261 ||||||||||||||||| ||||||||| ||||||||| |||||| ||||||| Sbjct: 2694594 tgctgcgccgacgaggcagcgctctgcacggcgtgcgacgaggaggtgcacgccgccaac 2694653 Query: 262 aagctcgccggcaagcacc 280 ||||||||||| ||||||| Sbjct: 2694654 aagctcgccgggaagcacc 2694672
>dbj|AP005463.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0712G01 Length = 87056 Score = 117 bits (59), Expect = 2e-23 Identities = 110/127 (86%) Strand = Plus / Plus Query: 159 ggtgcagtgcgacgtgtgcgcggccgacgccgcctccgtcttctgctgcgccgacgaggc 218 ||||||||||||||| ||||| ||||| | ||| | || ||||||||||||||||||| Sbjct: 53501 ggtgcagtgcgacgtctgcgccgccgagccggccgcggtgctctgctgcgccgacgaggc 53560 Query: 219 cgcgctctgcgacgcgtgcgaccgccgcgtgcaccgcgccaacaagctcgccggcaagca 278 |||||||||| ||| |||||||||||||| |||||||||||| |||||| ||||||| Sbjct: 53561 cgcgctctgctccgcctgcgaccgccgcgtccaccgcgccaaccgcctcgccagcaagca 53620 Query: 279 ccgccgc 285 ||||||| Sbjct: 53621 ccgccgc 53627
>dbj|AP004329.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1663_H12 Length = 125422 Score = 117 bits (59), Expect = 2e-23 Identities = 110/127 (86%) Strand = Plus / Plus Query: 159 ggtgcagtgcgacgtgtgcgcggccgacgccgcctccgtcttctgctgcgccgacgaggc 218 ||||||||||||||| ||||| ||||| | ||| | || ||||||||||||||||||| Sbjct: 123972 ggtgcagtgcgacgtctgcgccgccgagccggccgcggtgctctgctgcgccgacgaggc 124031 Query: 219 cgcgctctgcgacgcgtgcgaccgccgcgtgcaccgcgccaacaagctcgccggcaagca 278 |||||||||| ||| |||||||||||||| |||||||||||| |||||| ||||||| Sbjct: 124032 cgcgctctgctccgcctgcgaccgccgcgtccaccgcgccaaccgcctcgccagcaagca 124091 Query: 279 ccgccgc 285 ||||||| Sbjct: 124092 ccgccgc 124098
>dbj|AK105957.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-D08, full insert sequence Length = 1380 Score = 117 bits (59), Expect = 2e-23 Identities = 110/127 (86%) Strand = Plus / Plus Query: 159 ggtgcagtgcgacgtgtgcgcggccgacgccgcctccgtcttctgctgcgccgacgaggc 218 ||||||||||||||| ||||| ||||| | ||| | || ||||||||||||||||||| Sbjct: 186 ggtgcagtgcgacgtctgcgccgccgagccggccgcggtgctctgctgcgccgacgaggc 245 Query: 219 cgcgctctgcgacgcgtgcgaccgccgcgtgcaccgcgccaacaagctcgccggcaagca 278 |||||||||| ||| |||||||||||||| |||||||||||| |||||| ||||||| Sbjct: 246 cgcgctctgctccgcctgcgaccgccgcgtccaccgcgccaaccgcctcgccagcaagca 305 Query: 279 ccgccgc 285 ||||||| Sbjct: 306 ccgccgc 312
>dbj|AB001884.1| Oryza sativa (japonica cultivar-group) mRNA for zinc finger protein, complete cds, clone:R1479 Length = 1223 Score = 117 bits (59), Expect = 2e-23 Identities = 110/127 (86%) Strand = Plus / Plus Query: 159 ggtgcagtgcgacgtgtgcgcggccgacgccgcctccgtcttctgctgcgccgacgaggc 218 ||||||||||||||| ||||| ||||| | ||| | || ||||||||||||||||||| Sbjct: 29 ggtgcagtgcgacgtctgcgccgccgagccggccgcggtgctctgctgcgccgacgaggc 88 Query: 219 cgcgctctgcgacgcgtgcgaccgccgcgtgcaccgcgccaacaagctcgccggcaagca 278 |||||||||| ||| |||||||||||||| |||||||||||| |||||| ||||||| Sbjct: 89 cgcgctctgctccgcctgcgaccgccgcgtccaccgcgccaaccgcctcgccagcaagca 148 Query: 279 ccgccgc 285 ||||||| Sbjct: 149 ccgccgc 155
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 56.0 bits (28), Expect = 7e-05 Identities = 71/80 (88%), Gaps = 4/80 (5%) Strand = Plus / Plus Query: 202 tgctgcgccgacgaggccgcgctctg-cgacgcgtgcgaccgccg-cgtgcaccgcgcca 259 |||||||||||||||||||||||||| || ||| ||||| ||||| ||| ||| ||||| Sbjct: 5698900 tgctgcgccgacgaggccgcgctctgccgccgc-tgcga-cgccgccgtccactccgcca 5698957 Query: 260 acaagctcgccggcaagcac 279 ||| |||||||||||||||| Sbjct: 5698958 acaggctcgccggcaagcac 5698977
>dbj|AK067820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013117D12, full insert sequence Length = 793 Score = 56.0 bits (28), Expect = 7e-05 Identities = 71/80 (88%), Gaps = 4/80 (5%) Strand = Plus / Plus Query: 202 tgctgcgccgacgaggccgcgctctg-cgacgcgtgcgaccgccg-cgtgcaccgcgcca 259 |||||||||||||||||||||||||| || ||| ||||| ||||| ||| ||| ||||| Sbjct: 113 tgctgcgccgacgaggccgcgctctgccgccgc-tgcga-cgccgccgtccactccgcca 170 Query: 260 acaagctcgccggcaagcac 279 ||| |||||||||||||||| Sbjct: 171 acaggctcgccggcaagcac 190
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 56.0 bits (28), Expect = 7e-05 Identities = 71/80 (88%), Gaps = 4/80 (5%) Strand = Plus / Plus Query: 202 tgctgcgccgacgaggccgcgctctg-cgacgcgtgcgaccgccg-cgtgcaccgcgcca 259 |||||||||||||||||||||||||| || ||| ||||| ||||| ||| ||| ||||| Sbjct: 5698893 tgctgcgccgacgaggccgcgctctgccgccgc-tgcga-cgccgccgtccactccgcca 5698950 Query: 260 acaagctcgccggcaagcac 279 ||| |||||||||||||||| Sbjct: 5698951 acaggctcgccggcaagcac 5698970
>emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159056 Score = 56.0 bits (28), Expect = 7e-05 Identities = 71/80 (88%), Gaps = 4/80 (5%) Strand = Plus / Plus Query: 202 tgctgcgccgacgaggccgcgctctg-cgacgcgtgcgaccgccg-cgtgcaccgcgcca 259 |||||||||||||||||||||||||| || ||| ||||| ||||| ||| ||| ||||| Sbjct: 53423 tgctgcgccgacgaggccgcgctctgccgccgc-tgcga-cgccgccgtccactccgcca 53480 Query: 260 acaagctcgccggcaagcac 279 ||| |||||||||||||||| Sbjct: 53481 acaggctcgccggcaagcac 53500
>ref|XM_550653.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1339 Score = 54.0 bits (27), Expect = 3e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 202 tgctgcgccgacgaggccgcgctctgcgacgcgtgcgaccgccgcgtgcaccgcgccaac 261 ||||||||||||||||| ||||||||| ||||||||| |||||| ||||||| Sbjct: 111 tgctgcgccgacgaggcagcgctctgcacggcgtgcgacgaggaggtgcacgccgccaac 170 Query: 262 aagctcgccggcaagcacc 280 ||||||||||| ||||||| Sbjct: 171 aagctcgccgggaagcacc 189
>ref|NM_188312.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1074 Score = 54.0 bits (27), Expect = 3e-04 Identities = 74/87 (85%), Gaps = 2/87 (2%) Strand = Plus / Plus Query: 200 tctgctgcgccgacgaggccgcgctctgcgacgcg-tgcgaccgccgcgtgcaccgcgcc 258 |||||||||||||||| ||||| ||||||| |||| ||||||| || ||| ||| |||| Sbjct: 47 tctgctgcgccgacgacgccgccctctgcg-cgcgctgcgacctccacgtccacgccgcc 105 Query: 259 aacaagctcgccggcaagcaccgccgc 285 ||| |||||||||||||||| |||| Sbjct: 106 aaccgcctcgccggcaagcaccaccgc 132
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 54.0 bits (27), Expect = 3e-04 Identities = 74/87 (85%), Gaps = 2/87 (2%) Strand = Plus / Plus Query: 200 tctgctgcgccgacgaggccgcgctctgcgacgcg-tgcgaccgccgcgtgcaccgcgcc 258 |||||||||||||||| ||||| ||||||| |||| ||||||| || ||| ||| |||| Sbjct: 5638873 tctgctgcgccgacgacgccgccctctgcg-cgcgctgcgacctccacgtccacgccgcc 5638931 Query: 259 aacaagctcgccggcaagcaccgccgc 285 ||| |||||||||||||||| |||| Sbjct: 5638932 aaccgcctcgccggcaagcaccaccgc 5638958
>dbj|AP003105.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489A05 Length = 158815 Score = 54.0 bits (27), Expect = 3e-04 Identities = 74/87 (85%), Gaps = 2/87 (2%) Strand = Plus / Plus Query: 200 tctgctgcgccgacgaggccgcgctctgcgacgcg-tgcgaccgccgcgtgcaccgcgcc 258 |||||||||||||||| ||||| ||||||| |||| ||||||| || ||| ||| |||| Sbjct: 104346 tctgctgcgccgacgacgccgccctctgcg-cgcgctgcgacctccacgtccacgccgcc 104404 Query: 259 aacaagctcgccggcaagcaccgccgc 285 ||| |||||||||||||||| |||| Sbjct: 104405 aaccgcctcgccggcaagcaccaccgc 104431
>dbj|AP004806.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0710H01 Length = 187107 Score = 54.0 bits (27), Expect = 3e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 202 tgctgcgccgacgaggccgcgctctgcgacgcgtgcgaccgccgcgtgcaccgcgccaac 261 ||||||||||||||||| ||||||||| ||||||||| |||||| ||||||| Sbjct: 149935 tgctgcgccgacgaggcagcgctctgcacggcgtgcgacgaggaggtgcacgccgccaac 149994 Query: 262 aagctcgccggcaagcacc 280 ||||||||||| ||||||| Sbjct: 149995 aagctcgccgggaagcacc 150013
>dbj|AP006554.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0529C07 Length = 174011 Score = 54.0 bits (27), Expect = 3e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 202 tgctgcgccgacgaggccgcgctctgcgacgcgtgcgaccgccgcgtgcaccgcgccaac 261 ||||||||||||||||| ||||||||| ||||||||| |||||| ||||||| Sbjct: 106341 tgctgcgccgacgaggcagcgctctgcacggcgtgcgacgaggaggtgcacgccgccaac 106400 Query: 262 aagctcgccggcaagcacc 280 ||||||||||| ||||||| Sbjct: 106401 aagctcgccgggaagcacc 106419
>dbj|AK104083.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-D01, full insert sequence Length = 1339 Score = 54.0 bits (27), Expect = 3e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 202 tgctgcgccgacgaggccgcgctctgcgacgcgtgcgaccgccgcgtgcaccgcgccaac 261 ||||||||||||||||| ||||||||| ||||||||| |||||| ||||||| Sbjct: 111 tgctgcgccgacgaggcagcgctctgcacggcgtgcgacgaggaggtgcacgccgccaac 170 Query: 262 aagctcgccggcaagcacc 280 ||||||||||| ||||||| Sbjct: 171 aagctcgccgggaagcacc 189
>dbj|AK072231.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001E21, full insert sequence Length = 1450 Score = 54.0 bits (27), Expect = 3e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 202 tgctgcgccgacgaggccgcgctctgcgacgcgtgcgaccgccgcgtgcaccgcgccaac 261 ||||||||||||||||| ||||||||| ||||||||| |||||| ||||||| Sbjct: 144 tgctgcgccgacgaggcagcgctctgcacggcgtgcgacgaggaggtgcacgccgccaac 203 Query: 262 aagctcgccggcaagcacc 280 ||||||||||| ||||||| Sbjct: 204 aagctcgccgggaagcacc 222
>dbj|AB001886.1| Oryza sativa (japonica cultivar-group) mRNA for zinc finger protein, complete cds, clone:R2931 Length = 1418 Score = 54.0 bits (27), Expect = 3e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 202 tgctgcgccgacgaggccgcgctctgcgacgcgtgcgaccgccgcgtgcaccgcgccaac 261 ||||||||||||||||| ||||||||| ||||||||| |||||| ||||||| Sbjct: 119 tgctgcgccgacgaggcagcgctctgcacggcgtgcgacgaggaggtgcacgccgccaac 178 Query: 262 aagctcgccggcaagcacc 280 ||||||||||| ||||||| Sbjct: 179 aagctcgccgggaagcacc 197
>gb|AY109441.1| Zea mays CL359_1 mRNA sequence Length = 1551 Score = 50.1 bits (25), Expect = 0.004 Identities = 64/77 (83%) Strand = Plus / Plus Query: 153 catgaaggtgcagtgcgacgtgtgcgcggccgacgccgcctccgtcttctgctgcgccga 212 ||||||| | |||||||||| ||||| || || || ||| |||| | ||||||||||| Sbjct: 93 catgaagatccagtgcgacgcgtgcgagggcgcggctgccaccgtggtgtgctgcgccga 152 Query: 213 cgaggccgcgctctgcg 229 |||||||||||| |||| Sbjct: 153 cgaggccgcgctgtgcg 169 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Plus Query: 255 cgccaacaagctcgccggcaagcacc 280 |||||||||||||||| ||||||||| Sbjct: 195 cgccaacaagctcgccagcaagcacc 220
>gb|AC135920.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0015G13, complete sequence Length = 143966 Score = 46.1 bits (23), Expect = 0.070 Identities = 26/27 (96%) Strand = Plus / Plus Query: 195 cgtcttctgctgcgccgacgaggccgc 221 |||| |||||||||||||||||||||| Sbjct: 134845 cgtcctctgctgcgccgacgaggccgc 134871
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.070 Identities = 26/27 (96%) Strand = Plus / Plus Query: 195 cgtcttctgctgcgccgacgaggccgc 221 |||| |||||||||||||||||||||| Sbjct: 6433106 cgtcctctgctgcgccgacgaggccgc 6433132
>dbj|AK106865.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-C11, full insert sequence Length = 2055 Score = 46.1 bits (23), Expect = 0.070 Identities = 26/27 (96%) Strand = Plus / Plus Query: 195 cgtcttctgctgcgccgacgaggccgc 221 |||| |||||||||||||||||||||| Sbjct: 274 cgtcctctgctgcgccgacgaggccgc 300
>ref|XM_473004.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 774 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Plus Query: 255 cgccaacaagctcgccggcaagcacc 280 |||||||||||||||| ||||||||| Sbjct: 102 cgccaacaagctcgccagcaagcacc 127
>emb|AL662938.3|OSJN00138 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ990528_30, complete sequence Length = 88547 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Minus Query: 255 cgccaacaagctcgccggcaagcacc 280 |||||||||||||||| ||||||||| Sbjct: 79493 cgccaacaagctcgccagcaagcacc 79468
>emb|AL512542.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0522A01, complete sequence Length = 97077 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Minus Query: 255 cgccaacaagctcgccggcaagcacc 280 |||||||||||||||| ||||||||| Sbjct: 63142 cgccaacaagctcgccagcaagcacc 63117
>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11, complete sequence Length = 133856 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Minus Query: 255 cgccaacaagctcgccggcaagcacc 280 |||||||||||||||| ||||||||| Sbjct: 13871 cgccaacaagctcgccagcaagcacc 13846
>dbj|AB001883.1| Oryza sativa (japonica cultivar-group) mRNA for zinc finger protein, complete cds, clone:E10707 Length = 987 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Plus Query: 255 cgccaacaagctcgccggcaagcacc 280 |||||||||||||||| ||||||||| Sbjct: 124 cgccaacaagctcgccagcaagcacc 149
>ref|XM_470403.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1631 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 205 tgcgccgacgaggccgcgctctgcg 229 |||||||||||||||||||| |||| Sbjct: 1207 tgcgccgacgaggccgcgctgtgcg 1231
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 205 tgcgccgacgaggccgcgctctgcg 229 |||||||||||||||||||| |||| Sbjct: 35256087 tgcgccgacgaggccgcgctgtgcg 35256063 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 gcgccgacgaggccgcgctc 225 |||||||||||||||||||| Sbjct: 33921118 gcgccgacgaggccgcgctc 33921099
>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete sequence Length = 156606 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 205 tgcgccgacgaggccgcgctctgcg 229 |||||||||||||||||||| |||| Sbjct: 134848 tgcgccgacgaggccgcgctgtgcg 134824
>gb|AC121954.2| Mus musculus BAC clone RP24-218I17 from 6, complete sequence Length = 182855 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 atccatccatccatccctgcg 21 ||||||||||||||||||||| Sbjct: 74726 atccatccatccatccctgcg 74746
>emb|AL606609.2|OSJN00064 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089K24, complete sequence Length = 121799 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 gcggccgacgccgcctccgtc 198 ||||||||||||||||||||| Sbjct: 75264 gcggccgacgccgcctccgtc 75284
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 gccgacgaggccgcgctctgc 228 ||||||||||||||||||||| Sbjct: 20348281 gccgacgaggccgcgctctgc 20348261
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 205 tgcgccgacgaggccgcgctctgcg 229 |||||||||||||||||||| |||| Sbjct: 35346159 tgcgccgacgaggccgcgctgtgcg 35346135 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 gcgccgacgaggccgcgctc 225 |||||||||||||||||||| Sbjct: 34011590 gcgccgacgaggccgcgctc 34011571
>gb|AC099324.5| Oryza sativa chromosome 3 BAC OSJNBb0043P23 genomic sequence, complete sequence Length = 116443 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 205 tgcgccgacgaggccgcgctctgcg 229 |||||||||||||||||||| |||| Sbjct: 112367 tgcgccgacgaggccgcgctgtgcg 112391
>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1439_F07 Length = 153743 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 gccgacgaggccgcgctctgc 228 ||||||||||||||||||||| Sbjct: 127408 gccgacgaggccgcgctctgc 127388
>dbj|AK122172.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148H23, full insert sequence Length = 1249 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 208 gccgacgaggccgcgctctgc 228 ||||||||||||||||||||| Sbjct: 312 gccgacgaggccgcgctctgc 332
>dbj|AK109814.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-H05, full insert sequence Length = 1631 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 205 tgcgccgacgaggccgcgctctgcg 229 |||||||||||||||||||| |||| Sbjct: 1207 tgcgccgacgaggccgcgctgtgcg 1231
>ref|XM_470097.1| Oryza sativa (japonica cultivar-group), mRNA Length = 5247 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcgccgacgaggccgcgctc 225 |||||||||||||||||||| Sbjct: 485 gcgccgacgaggccgcgctc 504
>gb|BT018184.1| Zea mays clone EL01N0558C03.c mRNA sequence Length = 1188 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 atccatccatccatccctgc 20 |||||||||||||||||||| Sbjct: 925 atccatccatccatccctgc 906
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 4.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 297 caacccgtcgttgtcgcagatgccgccgccgc 328 |||||||||| ||||| |||||||||||||| Sbjct: 61019 caacccgtcgcggtcgctgatgccgccgccgc 60988
>gb|AC146189.3| Pan troglodytes BAC clone CH251-490L21 from Y, complete sequence Length = 180597 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 atccatccatccatccctgc 20 |||||||||||||||||||| Sbjct: 148585 atccatccatccatccctgc 148566
>ref|XM_532000.2| PREDICTED: Canis familiaris similar to KIAA1529 (LOC474769), mRNA Length = 3232 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 atccatccatccatccctgc 20 |||||||||||||||||||| Sbjct: 2977 atccatccatccatccctgc 2996
>ref|XM_790216.1| PREDICTED: Strongylocentrotus purpuratus similar to potassium channel regulator 1 (LOC590617), mRNA Length = 1286 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cacgtactacgggtgatcca 83 |||||||||||||||||||| Sbjct: 351 cacgtactacgggtgatcca 370
>emb|CR381565.8| Zebrafish DNA sequence from clone DKEYP-104A10 in linkage group 2, complete sequence Length = 74753 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 atccatccatccatccctgc 20 |||||||||||||||||||| Sbjct: 56534 atccatccatccatccctgc 56553 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 atccatccatccatccctgc 20 |||||||||||||||||||| Sbjct: 56358 atccatccatccatccctgc 56377
>dbj|BS000612.1| Pan troglodytes chromosome Y clone:PTBY-009O17, complete sequences Length = 80000 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 atccatccatccatccctgc 20 |||||||||||||||||||| Sbjct: 35145 atccatccatccatccctgc 35164
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 atccatccatccatccctgc 20 |||||||||||||||||||| Sbjct: 23920682 atccatccatccatccctgc 23920663
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 tcgccggcaagcaccgccgc 285 |||||||||||||||||||| Sbjct: 2874830 tcgccggcaagcaccgccgc 2874811
>gb|AC008731.8| Homo sapiens chromosome 16 clone CTD-2515A14, complete sequence Length = 219013 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 atccatccatccatccctgc 20 |||||||||||||||||||| Sbjct: 104094 atccatccatccatccctgc 104113
>emb|BX470204.13| Zebrafish DNA sequence from clone CH211-63C23 in linkage group 10, complete sequence Length = 185190 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 atccatccatccatccctgc 20 |||||||||||||||||||| Sbjct: 93747 atccatccatccatccctgc 93728
>emb|BX294123.12| Zebrafish DNA sequence from clone DKEYP-16G7 in linkage group 2, complete sequence Length = 168359 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 atccatccatccatccctgc 20 |||||||||||||||||||| Sbjct: 143298 atccatccatccatccctgc 143279
>dbj|AK033797.1| Mus musculus adult male epididymis cDNA, RIKEN full-length enriched library, clone:9230110J10 product:hypothetical protein, full insert sequence Length = 1448 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tccatccatccctgcgctgg 25 |||||||||||||||||||| Sbjct: 544 tccatccatccctgcgctgg 525
>emb|BX539338.4| Zebrafish DNA sequence from clone DKEY-240P9 in linkage group 2, complete sequence Length = 99688 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 atccatccatccatccctgc 20 |||||||||||||||||||| Sbjct: 51209 atccatccatccatccctgc 51190
>gb|AC006209.25| Homo sapiens X BAC GS1-546D14 (Genome Systems Human Bac Library) complete sequence Length = 141759 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 atccatccatccatccctgc 20 |||||||||||||||||||| Sbjct: 123950 atccatccatccatccctgc 123931
>gb|AC138466.12| Homo sapiens 12 BAC RP13-977J11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 129492 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 atccatccatccatccctgc 20 |||||||||||||||||||| Sbjct: 126543 atccatccatccatccctgc 126562 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 atccatccatccatccctgc 20 |||||||||||||||||||| Sbjct: 126231 atccatccatccatccctgc 126250
>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence Length = 172337 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcgccgacgaggccgcgctc 225 |||||||||||||||||||| Sbjct: 136573 gcgccgacgaggccgcgctc 136592
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 gctgcgccgacgaggccgcg 222 |||||||||||||||||||| Sbjct: 1809160 gctgcgccgacgaggccgcg 1809141
>gb|AC011489.6|AC011489 Homo sapiens chromosome 19 clone CTB-179K24, complete sequence Length = 164034 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 atccatccatccatccctgc 20 |||||||||||||||||||| Sbjct: 87450 atccatccatccatccctgc 87469
>emb|AL935264.12| Mouse DNA sequence from clone RP23-118A9 on chromosome 4, complete sequence Length = 230886 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tccatccatccctgcgctgg 25 |||||||||||||||||||| Sbjct: 89191 tccatccatccctgcgctgg 89172
>gb|AC113075.9| Mus musculus chromosome 19, clone RP23-278F24, complete sequence Length = 171837 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 atccatccatccatccctgc 20 |||||||||||||||||||| Sbjct: 5308 atccatccatccatccctgc 5289
>gb|AC137708.16| Mus musculus chromosome 3, clone RP24-277H8, complete sequence Length = 154779 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 atccatccatccatccctgc 20 |||||||||||||||||||| Sbjct: 120085 atccatccatccatccctgc 120104
>emb|AL732626.8| Mouse DNA sequence from clone RP23-191F22 on chromosome 4, complete sequence Length = 151688 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 atccatccatccatccctgc 20 |||||||||||||||||||| Sbjct: 121369 atccatccatccatccctgc 121388
>gb|L07489.1|RCAHEMTI Rhodobacter sphaeroides 5-animolevulinic acid synthase isozyme (hemT) gene, complete cds Length = 1881 Score = 40.1 bits (20), Expect = 4.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 297 caacccgtcgttgtcgcagatgccgccgccgc 328 |||||||||| ||||| |||||||||||||| Sbjct: 1111 caacccgtcgcggtcgctgatgccgccgccgc 1080 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,368,861 Number of Sequences: 3902068 Number of extensions: 2368861 Number of successful extensions: 277173 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 275503 Number of HSP's gapped (non-prelim): 1656 length of query: 328 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 306 effective length of database: 17,147,199,772 effective search space: 5247043130232 effective search space used: 5247043130232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
