ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet96g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PYRC_SYNY3 (P74438) Dihydroorotase (EC 3.5.2.3) (DHOase) 30 2.3
2CNTN5_BRARE (Q7ZW34) Contactin-5 precursor 29 3.0
3GUN6_DICDI (P22699) Endoglucanase precursor (EC 3.2.1.4) (Endo-1... 29 4.0

>PYRC_SYNY3 (P74438) Dihydroorotase (EC 3.5.2.3) (DHOase)|
          Length = 342

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 3   AVRTLDHDPYLSSSHGVDNHSTQQEPSQIESSALPWRLNSTMPSP---ILPAKEVEEV 167
           +V +LD     +S +G D +   +  +QI     PWR+ + +P P   ++P +  EE+
Sbjct: 280 SVNSLDKLEAFASFYGPDFYQLPRNTAQITLMKNPWRIPAELPFPESGLVPLRAGEEI 337



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>CNTN5_BRARE (Q7ZW34) Contactin-5 precursor|
          Length = 1056

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 33  LSSSHGVDNHS--TQQEPSQIESSALPWRLNSTMPSPILPAKE 155
           LS SHGVDNHS  T          +L W+   T P P+  + E
Sbjct: 645 LSWSHGVDNHSPITTYNVQARSPVSLGWQTVKTDPDPVTGSME 687



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>GUN6_DICDI (P22699) Endoglucanase precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase) (Spore germination protein
           270-6) (Cellulase)
          Length = 705

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 166 TSSTSFAGKIGDGMVELSLQGKAEDSIWLGSCWVL*LSTP*EEL 35
           T+   FAG++GDG V+ S  G  ED       ++L    P  E+
Sbjct: 136 TADNEFAGQVGDGNVDHSWWGPPEDMTMARPTYMLTTEAPGTEI 179


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,203,193
Number of Sequences: 219361
Number of extensions: 354843
Number of successful extensions: 1218
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 80,573,946
effective HSP length: 33
effective length of database: 73,335,033
effective search space used: 1760040792
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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