| Clone Name | baet96g06 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X96979.1|HVLTP7A2B H.vulgare mRNA for lipid transfer protein 7a2b Length = 755 Score = 153 bits (77), Expect = 9e-35 Identities = 80/81 (98%) Strand = Plus / Plus Query: 5 caccacacccactcatctgatcacctgctagccagatagcttaaccgatgactcgtctca 64 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 49 caccacacccactcatctgatcacctgctagccagatagcttaaccgatggctcgtctca 108 Query: 65 acagcaaggctgtggcggccg 85 ||||||||||||||||||||| Sbjct: 109 acagcaaggctgtggcggccg 129
>gb|AY226580.1| Triticum aestivum lipid transfer protein 3 (LTP3) mRNA, complete cds Length = 555 Score = 60.0 bits (30), Expect = 1e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 56 ctcgtctcaacagcaaggctgtggcggccg 85 |||||||||||||||||||||||||||||| Sbjct: 81 ctcgtctcaacagcaaggctgtggcggccg 110
>emb|AJ784900.2| Triticum aestivum mRNA for type 1 non-specific lipid transfer protein precursor (ltp9.4 gene) Length = 771 Score = 56.0 bits (28), Expect = 2e-05 Identities = 34/36 (94%) Strand = Plus / Plus Query: 50 cgatgactcgtctcaacagcaaggctgtggcggccg 85 ||||| |||||||||||||||||||||||| ||||| Sbjct: 74 cgatggctcgtctcaacagcaaggctgtggtggccg 109
>emb|AJ852541.1| Triticum aestivum ltp9.4a gene for type 1 non specific lipid transfer protein precursor, exons 1-2 Length = 1965 Score = 56.0 bits (28), Expect = 2e-05 Identities = 34/36 (94%) Strand = Plus / Plus Query: 50 cgatgactcgtctcaacagcaaggctgtggcggccg 85 ||||| |||||||||||||||||||||||| ||||| Sbjct: 842 cgatggctcgtctcaacagcaaggctgtggtggccg 877
>emb|AJ852561.1| Triticum aestivum mRNA for type 1 non specific lipid transfer protein precursor (ltp9.4b gene) Length = 776 Score = 52.0 bits (26), Expect = 3e-04 Identities = 29/30 (96%) Strand = Plus / Plus Query: 50 cgatgactcgtctcaacagcaaggctgtgg 79 ||||| |||||||||||||||||||||||| Sbjct: 70 cgatggctcgtctcaacagcaaggctgtgg 99
>emb|AJ852548.1| Triticum aestivum ltp9.4b gene for type 1 non specific lipid transfer protein precursor, exons 1-2 Length = 2000 Score = 52.0 bits (26), Expect = 3e-04 Identities = 29/30 (96%) Strand = Plus / Plus Query: 50 cgatgactcgtctcaacagcaaggctgtgg 79 ||||| |||||||||||||||||||||||| Sbjct: 1006 cgatggctcgtctcaacagcaaggctgtgg 1035
>gb|AC124012.4| Mus musculus BAC clone RP24-357P22 from chromosome 18, complete sequence Length = 193064 Score = 40.1 bits (20), Expect = 0.96 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 caccaccacacccactcatc 21 |||||||||||||||||||| Sbjct: 17696 caccaccacacccactcatc 17715
>gb|AC152060.3| Mus musculus BAC clone RP23-430C3 from chromosome 18, complete sequence Length = 198600 Score = 40.1 bits (20), Expect = 0.96 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 caccaccacacccactcatc 21 |||||||||||||||||||| Sbjct: 128051 caccaccacacccactcatc 128070
>gb|AC135962.4| Mus musculus BAC clone RP23-342H15 from chromosome 16, complete sequence Length = 202525 Score = 38.2 bits (19), Expect = 3.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 acaccaccacacccactca 19 ||||||||||||||||||| Sbjct: 66492 acaccaccacacccactca 66510
>gb|AC113266.24| Papio anubis clone rp41-106a4, complete sequence Length = 193032 Score = 38.2 bits (19), Expect = 3.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 62 tcaacagcaaggctgtggc 80 ||||||||||||||||||| Sbjct: 58238 tcaacagcaaggctgtggc 58220 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 800,797 Number of Sequences: 3902068 Number of extensions: 800797 Number of successful extensions: 95696 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95672 Number of HSP's gapped (non-prelim): 24 length of query: 89 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 68 effective length of database: 17,151,101,840 effective search space: 1166274925120 effective search space used: 1166274925120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)