ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet96g03 |
|---|---|
| Clone Library Name | barley_pub |
>GP157_HUMAN (Q5UAW9) Probable G-protein coupled receptor 157| Length = 335 Score = 32.3 bits (72), Expect = 0.30 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +2 Query: 155 CNCCCTSSPRTHNPREVPPSTAPTCKDGSHRNARDGSKRPS 277 C CCC+S P T +P P + AP+ S + + PS Sbjct: 294 CCCCCSSQPPTKSPAGTPKAPAPSKPGESQESQGTPGELPS 334
>MTHR_ORYSA (Q75HE6) Probable methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 594 Score = 30.8 bits (68), Expect = 0.88 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = +2 Query: 5 QPTVPRGNER*MARKWTVPTRSVLPGNEWCSAPCREGTTATSWYEAE 145 Q T PRG + + +W VP +SV NE C+ T++ W E + Sbjct: 369 QFTRPRGRGKKLQEEWAVPVKSVEDINERFMNFCQGKLTSSPWSELD 415
>MURG_BORPE (Q7VUQ3) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 357 Score = 30.8 bits (68), Expect = 0.88 Identities = 19/60 (31%), Positives = 28/60 (46%) Frame = -3 Query: 330 LLRTTGGRISWCAHATXREGRLLPSRALRWLPSLQVGAVDGGTSRGLCVRGLLVQQQLQA 151 +LR G R+ W + EGRL+P R + +P G G + L + LL + QA Sbjct: 26 VLRERGWRVLWLGNPDKMEGRLVPPRGIELVPLRFQGVRGRGAAALLKLPFLLARACAQA 85
>MURG_BORPA (Q7W4B4) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 357 Score = 30.8 bits (68), Expect = 0.88 Identities = 19/60 (31%), Positives = 28/60 (46%) Frame = -3 Query: 330 LLRTTGGRISWCAHATXREGRLLPSRALRWLPSLQVGAVDGGTSRGLCVRGLLVQQQLQA 151 +LR G R+ W + EGRL+P R + +P G G + L + LL + QA Sbjct: 26 VLRERGWRVLWLGNPDKMEGRLVPPRGIELVPLRFQGVRGRGAAALLKLPFLLARACAQA 85
>MURG_BORBR (Q7WFS2) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 357 Score = 30.8 bits (68), Expect = 0.88 Identities = 19/60 (31%), Positives = 28/60 (46%) Frame = -3 Query: 330 LLRTTGGRISWCAHATXREGRLLPSRALRWLPSLQVGAVDGGTSRGLCVRGLLVQQQLQA 151 +LR G R+ W + EGRL+P R + +P G G + L + LL + QA Sbjct: 26 VLRERGWRVLWLGNPDKMEGRLVPPRGIELVPLRFQGVRGRGAAALLKLPFLLARACAQA 85
>PLB_NEUCR (O42790) Lysophospholipase precursor (EC 3.1.1.5) (Phospholipase B)| Length = 653 Score = 30.4 bits (67), Expect = 1.1 Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 5/88 (5%) Frame = +2 Query: 50 WTVPTRSVLPGNEWCSAPCREGTTATSWYEAEVPACNCCCTSSPRTHNPREVPPSTAPTC 229 +T+ R+ + GN W SA GT + W P C C S P+ TC Sbjct: 541 YTMSQRNDIIGNGWNSATQGNGTLDSEW-----PTCVACAVISRSLDRLGRQTPAACKTC 595 Query: 230 KD-----GSHRNARDGSKRPSRXVA*AH 298 + G+ + G P +A AH Sbjct: 596 FERYCWNGTVNSKDTGVYMPEFKIADAH 623
>NH153_CAEEL (O01929) Nuclear hormone receptor family member nhr-153| Length = 415 Score = 30.4 bits (67), Expect = 1.1 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Frame = +2 Query: 71 VLPGNEWCSAPCREGTTATSWYEAEVPACNCCCTSSPRT-HNPREVPPSTAPTCKDGSHR 247 +LP N+ C + C+ Y EVP+CN C T RT R+ C DG+ Sbjct: 19 ILPQNQ-CPSVCQICRNPAIGYHYEVPSCNGCKTFFRRTIITGRKFKCFKVSNCLDGN-- 75 Query: 248 NARDGSKRPSR 280 + D SKR R Sbjct: 76 DVIDTSKRVCR 86
>MURG_RALSO (Q8XVI7) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 365 Score = 29.6 bits (65), Expect = 2.0 Identities = 20/60 (33%), Positives = 31/60 (51%) Frame = -3 Query: 330 LLRTTGGRISWCAHATXREGRLLPSRALRWLPSLQVGAVDGGTSRGLCVRGLLVQQQLQA 151 LL G ++ W +A+ EG+L+P L S++ G V G +GL + LL L+A Sbjct: 33 LLAARGWQVVWLGNASGMEGQLVPKHGFP-LESVRFGGVRG---KGLVTKFLLPLNLLRA 88
>NOTC3_RAT (Q9R172) Neurogenic locus notch homolog protein 3 precursor (Notch| 3) [Contains: Notch 3 extracellular truncation; Notch 3 intracellular domain] Length = 2319 Score = 29.6 bits (65), Expect = 2.0 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Frame = +2 Query: 50 WTVPTRSVLPGNEWC-SAPCREGTTATSWYEAEVPACNCCCTSSPRTHNPREVPPSTAPT 226 W+ P S + C S PC+ G T TS + +C C + H + P T Sbjct: 726 WSGPRCSQSLAPDACESQPCQAGGTCTS----DGIGFHCTCAPGFQGHQCEVLSPCTPSL 781 Query: 227 CKDGSH 244 C+ G H Sbjct: 782 CEHGGH 787
>YQ23_CAEEL (Q09452) Putative zinc finger protein C09F5.3| Length = 359 Score = 29.6 bits (65), Expect = 2.0 Identities = 19/62 (30%), Positives = 26/62 (41%) Frame = -1 Query: 248 CDGYHLCR*GLWTEGLHEGCACEGCSCSNNCRRALQLHTSWWL*CLRDKGQNTTHCPVRP 69 CD L GL L + C +C+ L TS+ CLR + HCP+R Sbjct: 293 CDESVLGEDGLDEHRLRKHCKVRFADKCADCQEPLLNETSFVEHCLRHSKDHAHHCPLRL 352 Query: 68 SE 63 S+ Sbjct: 353 SD 354
>ABI2_HUMAN (Q9NYB9) Abl interactor 2 (Abelson interactor 2) (Abi-2)| (Abl-binding protein 3) (AblBP3) (Arg-binding protein 1) (ArgBP1) Length = 513 Score = 29.6 bits (65), Expect = 2.0 Identities = 21/64 (32%), Positives = 24/64 (37%) Frame = +2 Query: 140 AEVPACNCCCTSSPRTHNPREVPPSTAPTCKDGSHRNARDGSKRPSRXVA*AHQEILPPV 319 A P S+P P VP STAP G N DG P+ PPV Sbjct: 289 AGTPPLPATSASAPAPLVPATVPSSTAPNAAAGGAPNLADGFTSPT-----------PPV 337 Query: 320 VRSS 331 V S+ Sbjct: 338 VSST 341
>HLAE_HUMAN (P13747) HLA class I histocompatibility antigen, alpha chain E| precursor (MHC class I antigen E) Length = 358 Score = 29.3 bits (64), Expect = 2.6 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 10/66 (15%) Frame = -3 Query: 249 LRWLPSLQ-----VGAVDGGTSRGLCVRGLLV-----QQQLQAGTSASYQLVAVVPSRQG 100 LRW P+ Q VG + G G V G +V +++ G SY S QG Sbjct: 293 LRWKPASQPTIPIVGIIAGLVLLGSVVSGAVVAAVIWRKKSSGGKGGSYSKAEWSDSAQG 352 Query: 99 AEHHSL 82 +E HSL Sbjct: 353 SESHSL 358
>NOTC3_MOUSE (Q61982) Neurogenic locus notch homolog protein 3 precursor (Notch| 3) [Contains: Notch 3 extracellular truncation; Notch 3 intracellular domain] Length = 2318 Score = 29.3 bits (64), Expect = 2.6 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 1/66 (1%) Frame = +2 Query: 50 WTVPTRSVLPGNEWC-SAPCREGTTATSWYEAEVPACNCCCTSSPRTHNPREVPPSTAPT 226 W+ P S + C S PC+ G T TS + C C + H + P T Sbjct: 725 WSGPRCSQSLAPDACESQPCQAGGTCTS----DGIGFRCTCAPGFQGHQCEVLSPCTPSL 780 Query: 227 CKDGSH 244 C+ G H Sbjct: 781 CEHGGH 786
>MTHR1_MAIZE (Q9SE94) Methylenetetrahydrofolate reductase 1 (EC 1.5.1.20)| (ZmMTHFR1) Length = 593 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = +2 Query: 5 QPTVPRGNER*MARKWTVPTRSVLPGNEWCSAPCREGTTATSWYEAE 145 Q T PRG + + +W VP +SV +E + C+ T++ W E + Sbjct: 369 QFTRPRGRGKKLQEEWAVPLKSVEDISERFTNFCQGKLTSSPWSELD 415
>LEU2_THET8 (Q9ZND5) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 472 Score = 29.3 bits (64), Expect = 2.6 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Frame = +2 Query: 71 VLPGNEWCSAPCREGTTATSWYEA----EVPACNCCCTSSPRTHNPREVPPSTAPTCKDG 238 V+PG+EW + E A + EA +P C+ C +P E+ C Sbjct: 374 VVPGSEWVARKAEEEGIAEVFREAGFEWRMPGCSMCLAMNPDRLEGDEL-------CASS 426 Query: 239 SHRN--ARDGSKR 271 S+RN R GS R Sbjct: 427 SNRNYKGRMGSPR 439
>LEU2_THET2 (Q72JB3) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 472 Score = 29.3 bits (64), Expect = 2.6 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Frame = +2 Query: 71 VLPGNEWCSAPCREGTTATSWYEA----EVPACNCCCTSSPRTHNPREVPPSTAPTCKDG 238 V+PG+EW + E A + EA +P C+ C +P E+ C Sbjct: 374 VVPGSEWVARKAEEEGIAEVFREAGFEWRMPGCSMCLAMNPDRLEGDEL-------CASS 426 Query: 239 SHRN--ARDGSKR 271 S+RN R GS R Sbjct: 427 SNRNYKGRMGSPR 439
>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein| Length = 2480 Score = 28.9 bits (63), Expect = 3.3 Identities = 18/58 (31%), Positives = 26/58 (44%) Frame = +2 Query: 80 GNEWCSAPCREGTTATSWYEAEVPACNCCCTSSPRTHNPREVPPSTAPTCKDGSHRNA 253 G E CS ++T E P +CC PRT P + S +P+ + G+ R A Sbjct: 444 GRERCSQDSASPASSTGLPEGSEPESSCC----PRT--PEDGVDSASPSAQIGAERKA 495
>BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor| Length = 1700 Score = 28.1 bits (61), Expect = 5.7 Identities = 10/51 (19%), Positives = 24/51 (47%) Frame = +2 Query: 83 NEWCSAPCREGTTATSWYEAEVPACNCCCTSSPRTHNPREVPPSTAPTCKD 235 +E C C + T + + C+C C + P+ ++P+ + + C++ Sbjct: 750 DETCDCVCPQKNTCIAPKVWDAKTCSCICVNPPKCNSPQVLKDTCCCGCQN 800
>SCTM1_HUMAN (Q8WVN6) Secreted and transmembrane protein 1 precursor (Protein| K12) Length = 248 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +2 Query: 89 WCSAPCREGTTATSWYEAEVPACN 160 W S C EG + SW E V +CN Sbjct: 33 WDSPICTEGVVSVSWGENTVMSCN 56
>IPP1_RABIT (P01099) Protein phosphatase inhibitor 1 (IPP-1) (I-1)| Length = 166 Score = 27.7 bits (60), Expect = 7.4 Identities = 26/78 (33%), Positives = 32/78 (41%) Frame = +2 Query: 20 RGNER*MARKWTVPTRSVLPGNEWCSAPCREGTTATSWYEAEVPACNCCCTSSPRTHNPR 199 +G E A + T S PG A R G +AT A+ PA SPR R Sbjct: 97 QGEEPEGAAEGTGAQESQPPGTPGTGAESRLGPSAT----AQKPA-----QPSPRAQERR 147 Query: 200 EVPPSTAPTCKDGSHRNA 253 PSTA T +D +A Sbjct: 148 GEEPSTAKTSQDSQGASA 165
>TRI42_MOUSE (Q9D2H5) Tripartite motif protein 42| Length = 723 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 4/35 (11%) Frame = +2 Query: 86 EWCSAPCREGTTA----TSWYEAEVPACNCCCTSS 178 ++C C E SW A P C CCCT+S Sbjct: 51 QFCHCTCAENPNCHWCCCSW--ANDPNCKCCCTAS 83
>TRI42_HUMAN (Q8IWZ5) Tripartite motif protein 42| Length = 723 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 4/35 (11%) Frame = +2 Query: 86 EWCSAPCREGTTA----TSWYEAEVPACNCCCTSS 178 ++C C E SW A P C CCCT+S Sbjct: 51 QFCHCTCSESPNCHWCCCSW--ANDPNCKCCCTAS 83
>DTBP1_HUMAN (Q96EV8) Dystrobrevin-binding protein 1 (Dysbindin)| (Hermansky-Pudlak syndrome 7 protein) Length = 351 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%) Frame = +2 Query: 191 NPREV---PPSTAPTCKDGSHRNARDGSKRP 274 NP E+ PPS++ TC D + R+ +G + P Sbjct: 287 NPSELRAKPPSSSSTCTDSATRDISEGGESP 317
>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger| receptor expressed by endothelial cells 2 protein) (SREC-II) (SRECRP-1) Length = 866 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/47 (29%), Positives = 15/47 (31%) Frame = -1 Query: 263 CHPEHCDGYHLCR*GLWTEGLHEGCACEGCSCSNNCRRALQLHTSWW 123 CHP G C G W C C S + A H WW Sbjct: 163 CHPR--SGACRCEPGWWGAQCASACYCSATSRCDPQTGACLCHAGWW 207
>VT2_SFVKA (P25943) Tumor necrosis factor soluble receptor precursor (Protein| T2) Length = 325 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 3/59 (5%) Frame = +2 Query: 77 PGNEWCSAPCREGTTATSWYEAEVPACNCC---CTSSPRTHNPREVPPSTAPTCKDGSH 244 PG+ +PC +GT S A PAC C CT P + C G++ Sbjct: 55 PGSNTVCSPCEDGTFTASTNHA--PACVSCRGPCTGHLSESQPCDRTHDRVCNCSTGNY 111
>SREC2_MOUSE (P59222) Scavenger receptor class F member 2 precursor (Scavenger| receptor expressed by endothelial cells 2 protein) (SREC-II) Length = 833 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/47 (29%), Positives = 15/47 (31%) Frame = -1 Query: 263 CHPEHCDGYHLCR*GLWTEGLHEGCACEGCSCSNNCRRALQLHTSWW 123 CHP G C G W C C S + A H WW Sbjct: 155 CHPR--SGACRCEPGWWGAQCASACYCSATSRCDPQTGACLCHVGWW 199
>FLGH_XANOR (Q5GZP1) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 230 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +3 Query: 69 RSYRAMSGVLPLVAKALQPPAGMKLKCPPAI 161 R Y AM+ ++P+VA +QP AG P + Sbjct: 30 RPYAAMAPIVPVVAPTVQPTAGAIYAAGPGL 60
>K0143_HUMAN (Q14156) Protein KIAA0143 (Fragment)| Length = 885 Score = 27.3 bits (59), Expect = 9.7 Identities = 17/49 (34%), Positives = 22/49 (44%) Frame = +2 Query: 92 CSAPCREGTTATSWYEAEVPACNCCCTSSPRTHNPREVPPSTAPTCKDG 238 C+AP G A++ E +P CCC S+ R R V KDG Sbjct: 48 CAAPLSLGAAASA-VEIAMPTRVCCCCSALRPRYKRLVDNIFPEDPKDG 95
>MMTA2_MOUSE (Q99LX5) Multiple myeloma tumor-associated protein 2 homolog| Length = 260 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/38 (31%), Positives = 17/38 (44%) Frame = +2 Query: 167 CTSSPRTHNPREVPPSTAPTCKDGSHRNARDGSKRPSR 280 C+SSP PR S C +++D + PSR Sbjct: 214 CSSSPSPPRPRHQRHSDFSPCSKRKREHSQDSGRNPSR 251
>FAT2_RAT (O88277) Protocadherin Fat 2 precursor (Multiple epidermal growth| factor-like domains 1) Length = 4351 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Frame = +2 Query: 80 GNEWC-SAPCREGTTATSWYEAEVPACNC 163 G E C SAPC+EG T S E +CNC Sbjct: 3988 GRENCTSAPCQEGGTCVS--SPEGTSCNC 4014
>ALS_RAT (P35859) Insulin-like growth factor-binding protein complex acid| labile chain precursor (ALS) Length = 603 Score = 27.3 bits (59), Expect = 9.7 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 16/64 (25%) Frame = +2 Query: 101 PCR-EGTTATSWYEAEVP----ACNCC-----------CTSSPRTHNPREVPPSTAPTCK 232 PC +GT + +AE P AC C C+S TH P ++P ST Sbjct: 22 PCHLQGTDPGASADAEGPQCPVACTCSHDDYTDELSVFCSSKNLTHLPDDIPVSTRALWL 81 Query: 233 DGSH 244 DG++ Sbjct: 82 DGNN 85
>Y3456_PSEAE (Q9HYF0) UPF0209 protein PA3456| Length = 654 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -3 Query: 279 REGRLLPSRALRWLPSLQVGAVDGGTSRGL 190 R+ R +P RA WLP L + + G SRGL Sbjct: 582 RDARQVPERACPWLPGLYLNS--GHGSRGL 609 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,668,443 Number of Sequences: 219361 Number of extensions: 1190761 Number of successful extensions: 3958 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3770 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3951 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
