ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet96f11 |
|---|---|
| Clone Library Name | barley_pub |
>IAA30_ORYSA (P0C132) Auxin-responsive protein IAA30 (Indoleacetic acid-induced| protein 30) Length = 277 Score = 32.0 bits (71), Expect = 0.40 Identities = 22/66 (33%), Positives = 24/66 (36%), Gaps = 6/66 (9%) Frame = +1 Query: 145 MAADLGFEATXXXXXX------XXXXXXXXXXXXXXXXFAETIDLKLKLXXXXXXXXXXX 306 MAADL FEAT FAETIDLKLKL Sbjct: 1 MAADLAFEATELRLGLPGGGGDGDAAAAAARSSSGKRGFAETIDLKLKLEPAAAAVDDDD 60 Query: 307 DRSDVA 324 D+ + A Sbjct: 61 DKEEAA 66
>BMP8A_MOUSE (P34821) Bone morphogenetic protein 8A precursor (BMP-8A)| (Osteogenic protein 2) (OP-2) Length = 399 Score = 28.9 bits (63), Expect = 3.4 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +2 Query: 35 RLSKQPNRTPKARRETQRKEPKQTQQ 112 R S+ P R P+A R +R++PK+T + Sbjct: 250 RASQSPVRAPRAARPLKRRQPKKTNE 275
>SGK2_HUMAN (Q9HBY8) Serine/threonine-protein kinase Sgk2 (EC 2.7.11.1)| (Serum/glucocorticoid-regulated kinase 2) Length = 427 Score = 28.1 bits (61), Expect = 5.8 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +1 Query: 25 LHRSPLKTAKPNPKSSPGNAEKGTEANPAAE 117 ++ SP T P P + GN G ANP A+ Sbjct: 61 MNSSPAGTPSPQPSRANGNINLGPSANPNAQ 91
>JHD3B_MOUSE (Q91VY5) JmjC domain-containing histone demethylation protein 3B| (EC 1.14.11.-) (Jumonji domain-containing protein 2B) Length = 1086 Score = 28.1 bits (61), Expect = 5.8 Identities = 18/45 (40%), Positives = 21/45 (46%) Frame = +1 Query: 22 HLHRSPLKTAKPNPKSSPGNAEKGTEANPAAEGRG*ARQLAMAAD 156 H RS K +KP SPG A G + E RG +R AM D Sbjct: 402 HRRRSQPKKSKPEESRSPGEATAG--VSTLDEARGCSRGEAMPED 444
>MRP2_HUMAN (Q92887) Canalicular multispecific organic anion transporter 1| (ATP-binding cassette sub-family C member 2) (Multidrug resistance-associated protein 2) (Canalicular multidrug resistance protein) Length = 1545 Score = 28.1 bits (61), Expect = 5.8 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +2 Query: 65 KARRETQRKEPKQTQQQKGGAEPG 136 KARR QR++ K +QQ G PG Sbjct: 252 KARRALQRRQEKSSQQNSGARLPG 275
>RL32_METKA (Q8TW13) 50S ribosomal protein L32e| Length = 131 Score = 28.1 bits (61), Expect = 5.8 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +2 Query: 38 LSKQPNRTPKARRETQRKEPKQTQQQKGGAEPGS*QWRR 154 LSK+ R K R E +RK+PK +Q+ + +WRR Sbjct: 7 LSKEEERLLKLREELKRKKPKFRRQEWHRYKKLGEKWRR 45
>MAGI2_HUMAN (Q86UL8) Membrane-associated guanylate kinase, WW and PDZ| domain-containing protein 2 (Membrane-associated guanylate kinase inverted 2) (MAGI-2) (Atrophin-1-interacting protein 1) (Atrophin-1-interacting protein A) Length = 1455 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +1 Query: 34 SPLKTAKPNPKSSPGNAEKGTEANPAAEGRG*ARQLAMAAD 156 SP + A+P + +PG + PA+E R A AAD Sbjct: 1319 SPQRAARPRLEEAPGGQGRPEAGRPASEARAPGLAAADAAD 1359
>BMP8B_HUMAN (P34820) Bone morphogenetic protein 8B precursor (BMP-8B) (BMP-8)| (Osteogenic protein 2) (OP-2) Length = 402 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +2 Query: 35 RLSKQPNRTPKARRETQRKEPKQTQQ 112 R S P RTP+A R +R++PK++ + Sbjct: 253 RASPSPIRTPRAVRPLRRRQPKKSNE 278
>BMP8A_HUMAN (Q7Z5Y6) Bone morphogenetic protein 8A precursor (BMP-8A)| Length = 402 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +2 Query: 35 RLSKQPNRTPKARRETQRKEPKQTQQ 112 R S P RTP+A R +R++PK++ + Sbjct: 253 RASPSPIRTPRAVRPLRRRQPKKSNE 278
>B4_XENLA (P15308) B4 protein (Linker histone B4) (Histone H1-like protein)| Length = 273 Score = 27.7 bits (60), Expect = 7.5 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 53 NRTPKARRETQRKEPKQTQQQKGGAEP 133 N P A +ETQ+K PK+ ++ K EP Sbjct: 134 NVDPNAEQETQKKAPKKEKKAKTEKEP 160
>HMCS1_RAT (P17425) Hydroxymethylglutaryl-CoA synthase, cytoplasmic (EC| 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) Length = 520 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +3 Query: 18 SAFASLASQNSQTEPQKLAGKR 83 S + SLAS +Q PQ+LAGKR Sbjct: 348 SVYGSLASVLAQYSPQQLAGKR 369
>HMCS1_PONPY (Q5R7Z9) Hydroxymethylglutaryl-CoA synthase, cytoplasmic (EC| 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) Length = 520 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +3 Query: 18 SAFASLASQNSQTEPQKLAGKR 83 S + SLAS +Q PQ+LAGKR Sbjct: 348 SVYGSLASVLAQYSPQQLAGKR 369
>HMCS1_MOUSE (Q8JZK9) Hydroxymethylglutaryl-CoA synthase, cytoplasmic (EC| 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) Length = 520 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +3 Query: 18 SAFASLASQNSQTEPQKLAGKR 83 S + SLAS +Q PQ+LAGKR Sbjct: 348 SVYGSLASVLAQYSPQQLAGKR 369
>HMCS1_HUMAN (Q01581) Hydroxymethylglutaryl-CoA synthase, cytoplasmic (EC| 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) Length = 520 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +3 Query: 18 SAFASLASQNSQTEPQKLAGKR 83 S + SLAS +Q PQ+LAGKR Sbjct: 348 SVYGSLASVLAQYSPQQLAGKR 369
>HMCS1_CRIGR (P13704) Hydroxymethylglutaryl-CoA synthase, cytoplasmic (EC| 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) Length = 520 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +3 Query: 18 SAFASLASQNSQTEPQKLAGKR 83 S + SLAS +Q PQ+LAGKR Sbjct: 348 SVYGSLASVLAQYSPQQLAGKR 369
>MOBL_THIFE (P20085) Mobilization protein mobL| Length = 378 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +2 Query: 35 RLSKQPNRTPKARRETQRKEPKQTQQQKGGAE 130 RL +Q R + RRE +R Q QQ+K A+ Sbjct: 299 RLREQQERAERERREQERAREAQRQQEKQQAD 330
>ZN710_HUMAN (Q8N1W2) Zinc finger protein 710| Length = 664 Score = 27.3 bits (59), Expect = 9.8 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = -2 Query: 168 LEAQVRRHC*LPGSAPPFCCWVCFGSFL 85 L+A ++RH + S P+ C +CF +F+ Sbjct: 502 LQANMKRHMLIHTSVRPYQCHICFKTFV 529
>INVS_CHICK (Q8UVC3) Inversin| Length = 1106 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%) Frame = +2 Query: 29 IARLSKQPNRTPKARRETQRKEPKQTQQQK----GGAEPGS 139 IAR SK+ PK++R Q+ K+ ++ G + PGS Sbjct: 800 IARNSKRCEAVPKSKRHQQKSRHKEVNYERCSPAGSSRPGS 840
>ZN710_MOUSE (Q3U288) Zinc finger protein 710| Length = 666 Score = 27.3 bits (59), Expect = 9.8 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = -2 Query: 168 LEAQVRRHC*LPGSAPPFCCWVCFGSFL 85 L+A ++RH + S P+ C +CF +F+ Sbjct: 504 LQANMKRHMLIHTSVRPYQCHICFKTFV 531
>TAT_HV1MN (P05905) TAT protein (Transactivating regulatory protein)| Length = 101 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 6/40 (15%) Frame = -2 Query: 135 PGSAPPFCCWV------CFGSFLCVSRRAFGVRFGCFERR 34 PGS P C CF +C +++A G+ +G +RR Sbjct: 14 PGSQPKTACTTCYCKKCCFHCQVCFTKKALGISYGRKKRR 53
>CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor| Length = 1685 Score = 27.3 bits (59), Expect = 9.8 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = +1 Query: 28 HRSPLKTAKPNPKSSPGNAEKGTEANPAAEG 120 H P P P SPG A +G + NP +G Sbjct: 1228 HGFPGVQGPPGPPGSPGPALEGPKGNPGPQG 1258
>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)| (LC collagen) Length = 2944 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +1 Query: 37 PLKTAKPNPKSSPGNA-EKGTEANPAAEGR 123 P +T P P+ PG+A KG P A+GR Sbjct: 1277 PGRTGAPGPQGPPGSATAKGERGFPGADGR 1306 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,245,704 Number of Sequences: 219361 Number of extensions: 366100 Number of successful extensions: 2210 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2077 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2200 length of database: 80,573,946 effective HSP length: 83 effective length of database: 62,366,983 effective search space used: 1496807592 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
