ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet96e11 |
|---|---|
| Clone Library Name | barley_pub |
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 32.7 bits (73), Expect = 0.22 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = +1 Query: 97 WHELGGHGRGRQGPQFLQATASGRRRRLGGCVADF--PGGTRRGGWQGPAQQGG 252 W + GG G+G G Q G ++ GG + P ++GGW GP Q GG Sbjct: 260 WGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGG 313 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = +1 Query: 205 GGTRRGGWQGPAQQGG 252 GG GGW GPAQ+GG Sbjct: 222 GGGGGGGWGGPAQRGG 237
>DNAJ_PSEPK (Q88DU3) Chaperone protein dnaJ| Length = 375 Score = 31.2 bits (69), Expect = 0.63 Identities = 19/50 (38%), Positives = 23/50 (46%) Frame = +1 Query: 106 LGGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQGGD 255 +GG G G G F G +DF GG RGG +G AQ+G D Sbjct: 78 MGGGGAGFGGANFSDI--------FGDVFSDFFGGGGRGGGRGGAQRGSD 119
>SPD2_NEPCL (P46804) Spidroin 2 (Dragline silk fibroin 2) (Fragment)| Length = 627 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQG 249 GG+G G+QGP + A+ G PG GG+ GP QQG Sbjct: 12 GGYGPGQQGPSGPGSAAAAAAAAAAGPGGYGPGQQGPGGY-GPGQQG 57 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRG----GWQGPAQQG 249 GG+G+G+QGP + A+ PGG G G GP QQG Sbjct: 97 GGYGQGQQGPSGPGSAAAASAAASAESGQQGPGGYGPGQQGPGGYGPGQQG 147 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQG 249 GG+G G+QGP + A+ A PG GG+ GP QQG Sbjct: 190 GGYGPGQQGPSGPGSAAA------AAAAASGPGQQGPGGY-GPGQQG 229 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQG 249 GG+G G+QGP + A+ A PG GG+ GP QQG Sbjct: 149 GGYGPGQQGPSGPGSAAA------AAAAASGPGQQGPGGY-GPGQQG 188 Score = 28.1 bits (61), Expect = 5.4 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%) Frame = +1 Query: 109 GGHGRGRQGPQ-----FLQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQG 249 GG+G G+QGP A A ++ LGG + G + G GP QQG Sbjct: 296 GGYGPGQQGPSGAGSAAAAAAAGPGQQGLGG----YGPGQQGPGGYGPGQQG 343 Score = 28.1 bits (61), Expect = 5.4 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 4/51 (7%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRG----GWQGPAQQG 249 GG+G G+QGP + A+ G PGG G G GP QQG Sbjct: 260 GGYGPGQQGPSGPGSAAAAAAAAAG------PGGYGPGQQGPGGYGPGQQG 304 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLG-GCVADFPGGTRRGGWQGPAQQG 249 GG+G G+QGP A G++ G G A G GPAQQG Sbjct: 431 GGYGPGQQGP---GGYAPGQQGPSGPGSAAAAAAAAAGPGGYGPAQQG 475
>PX11B_PONPY (Q5RFI0) Peroxisomal membrane protein 11B (Peroxin-11B)| (Peroxisomal biogenesis factor 11B) (PEX11beta) (Pex11pbeta) Length = 259 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +1 Query: 145 LQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQGG 252 ++ +S RRL G PGG+ GG GP GG Sbjct: 146 MEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPGG 181
>PX11B_HUMAN (O96011) Peroxisomal membrane protein 11B (Peroxin-11B)| (Peroxisomal biogenesis factor 11B) (PEX11beta) (Pex11pbeta) Length = 259 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +1 Query: 145 LQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQGG 252 ++ +S RRL G PGG+ GG GP GG Sbjct: 146 MEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPGG 181
>PIN3_ARATH (Q9S7Z8) Auxin efflux carrier component 3 (AtPIN3)| Length = 640 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/62 (29%), Positives = 26/62 (41%) Frame = -1 Query: 352 AGLVDAQAVLDVIELYGRLHREPDAAVAEAARGHHLAVPVLATRRGACHPESPPRIRRVA 173 A +V + DV+ L G E DA + + + H A+RR C P PR + Sbjct: 170 ASIVSFKVESDVVSLDGHDFLETDAEIGDDGKLHVTVRKSNASRRSFCGPNMTPRPSNLT 229 Query: 172 AA 167 A Sbjct: 230 GA 231
>GLND_VIBVY (Q7MIF8) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 873 Score = 28.9 bits (63), Expect = 3.1 Identities = 22/68 (32%), Positives = 29/68 (42%) Frame = -1 Query: 289 EPDAAVAEAARGHHLAVPVLATRRGACHPESPPRIRRVAAAYRSQSLAGIAVLVCLFHGP 110 +P+A + HHL + V A RR PE I A R + + LVCL Sbjct: 526 KPEAKLVSWLVRHHLLMSVTAQRRDIYDPEV---ITEFAKQVRDEE--RLEYLVCLTVAD 580 Query: 109 LAHANPEL 86 + NPEL Sbjct: 581 ICATNPEL 588
>GLND_VIBVU (Q8DBG3) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 873 Score = 28.9 bits (63), Expect = 3.1 Identities = 22/68 (32%), Positives = 29/68 (42%) Frame = -1 Query: 289 EPDAAVAEAARGHHLAVPVLATRRGACHPESPPRIRRVAAAYRSQSLAGIAVLVCLFHGP 110 +P+A + HHL + V A RR PE I A R + + LVCL Sbjct: 526 KPEAKLVSWLVRHHLLMSVTAQRRDIYDPEV---ITEFAKQVRDEE--RLEYLVCLTVAD 580 Query: 109 LAHANPEL 86 + NPEL Sbjct: 581 ICATNPEL 588
>MYSB_ACACA (P19706) Myosin heavy chain IB (Myosin heavy chain IL)| Length = 1147 Score = 28.9 bits (63), Expect = 3.1 Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGGWQGP-AQQGG 252 GG G GR GP + +GR GG PGG RGG GP A +GG Sbjct: 989 GGPGMGRGGPG-MGGPGAGR----GGPGMGGPGGPGRGGPGGPGAGRGG 1032
>VAX2_MOUSE (Q9WTP9) Ventral anterior homeobox 2 (Ventral retina homeodomain| protein) Length = 292 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/46 (32%), Positives = 17/46 (36%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQ 246 G HG R T S R + G A P G+R G QQ Sbjct: 23 GRHGEHRGAEDLRADTGSASPREIAGTSASSPAGSRESGGDSDGQQ 68
>ASPD_METTH (O27054) Probable L-aspartate dehydrogenase (EC 1.4.1.21)| Length = 257 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -1 Query: 370 EPLDGLAGLVDAQAVLDVIELYGRLHREPDAAVAEAAR 257 E + LA +VD +AVLDV ++ + +AA EA R Sbjct: 40 ERAENLASMVDGRAVLDVADMLPEVDLVVEAASPEAVR 77
>FTR_RHOBA (Q7UKZ8) Formylmethanofuran--tetrahydromethanopterin| formyltransferase (EC 2.3.1.101) (H4MPT formyltransferase) Length = 334 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/36 (38%), Positives = 15/36 (41%) Frame = +1 Query: 118 GRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGG 225 GR Q A R L G + FPGGT R G Sbjct: 193 GRTMQSVTIASRAAIDAMRELPGIITPFPGGTTRSG 228
>SSB2_STRCO (Q9X8U3) Single-stranded DNA-binding protein 2 (SSB 2)| (Helix-destabilizing protein 2) Length = 199 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFP---GGTRRGGWQGPAQQGG 252 GG G G+ G + G++ GG AD P GG GG QG QGG Sbjct: 132 GGGGGGQGGGGWGGGPGGGQQG--GGAPADDPWATGGAPAGGQQGGGGQGG 180
>SANT_PLAFV (P09593) S-antigen protein precursor| Length = 375 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQGG 252 G G G +GP+ S + GG ++ P GT G +GP GG Sbjct: 257 GTGGPGSEGPKGTGGPGSEGPKGTGGPGSESPKGTGGPGSEGPKGTGG 304 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQGG 252 G G G +GP+ S + GG ++ P GT G +GP GG Sbjct: 235 GTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGG 282 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQGG 252 G G G +GP+ S + GG ++ P GT G +GP GG Sbjct: 224 GTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGG 271 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQGG 252 G G G +GP+ S + GG ++ P GT G +GP GG Sbjct: 213 GTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGG 260 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQGG 252 G G G +GP+ S + GG ++ P GT G +GP GG Sbjct: 202 GTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGG 249 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQGG 252 G G G +GP+ S + GG ++ P GT G +GP GG Sbjct: 191 GTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGG 238 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQGG 252 G G G +GP+ S + GG ++ P GT G +GP GG Sbjct: 180 GTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGG 227 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQGG 252 G G G +GP+ S + GG ++ P GT G +GP GG Sbjct: 169 GTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGG 216 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQGG 252 G G G +GP+ S + GG ++ P GT G +GP GG Sbjct: 158 GTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGG 205 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQGG 252 G G G +GP+ S + GG ++ P GT G +GP GG Sbjct: 147 GTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGG 194 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQGG 252 G G G +GP+ S + GG ++ P GT G +GP GG Sbjct: 136 GTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGG 183 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQGG 252 G G G +GP+ S + GG ++ P GT G +GP GG Sbjct: 125 GTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGG 172 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQGG 252 G G G +GP+ S + GG ++ P GT G +GP GG Sbjct: 114 GTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGG 161
>VGF_HUMAN (O15240) Neurosecretory protein VGF precursor| Length = 616 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = -2 Query: 228 PPAAARATRKVRHASAESPPPTARSRLQE 142 PP AA A VR PPP+AR L + Sbjct: 494 PPRAAPAPTHVRSPQPPPPPPSARDELPD 522
>ZEP1_HUMAN (P15822) Zinc finger protein 40 (Human immunodeficiency virus type I| enhancer-binding protein 1) (HIV-EP1) (Major histocompatibility complex-binding protein 1) (MBP-1) (Positive regulatory domain II-binding factor 1) (PRDII-BF1) Length = 2717 Score = 27.7 bits (60), Expect = 7.0 Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 8/89 (8%) Frame = -1 Query: 370 EPLDGLA-GLVDAQAVLDVIEL-YGRLHREPDAAVAEAARGHHLAVPVLATRRGACH--- 206 +P+D L L+ VL + Y R P A AAR + +P + T R CH Sbjct: 2243 DPMDVLPRALLTRMTVLSTAQSDYNRKTLSPGKARQRAARDENDTIPSVDTSRSPCHQMS 2302 Query: 205 ---PESPPRIRRVAAAYRSQSLAGIAVLV 128 PES +R S+AG AV + Sbjct: 2303 VDYPESEEILR--------SSMAGKAVAI 2323
>SPD1_NEPCL (P19837) Spidroin 1 (Dragline silk fibroin 1) (Fragment)| Length = 747 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQG 249 GG G+G G L + +GR + G A GG +GG+ G QG Sbjct: 52 GGAGQGGYGG--LGSQGAGRGGQGAGAAAAAAGGAGQGGYGGLGSQG 96
>DNAJ_VIBHA (O87385) Chaperone protein dnaJ| Length = 385 Score = 27.7 bits (60), Expect = 7.0 Identities = 19/49 (38%), Positives = 20/49 (40%) Frame = +1 Query: 109 GGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGGWQGPAQQGGD 255 GG G G G F G D GG RRGG Q AQ+G D Sbjct: 82 GGGGFGGGGADFGDI--------FGDVFGDIFGGGRRGGGQQRAQRGAD 122
>ZNFX1_HUMAN (Q9P2E3) NFX1-type zinc finger-containing protein 1| Length = 1918 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%) Frame = -1 Query: 295 HREP-DAAVAEAARGHHLAVPVLATRRGACHPESPPRIRRVAAAY 164 HR P D + AR P A R GA HP PR AAY Sbjct: 19 HRGPVDGELPPRARNQANNPPANALRGGASHPGRHPRANNHPAAY 63
>GLND_VIBPA (Q87MD6) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 874 Score = 27.7 bits (60), Expect = 7.0 Identities = 21/68 (30%), Positives = 29/68 (42%) Frame = -1 Query: 289 EPDAAVAEAARGHHLAVPVLATRRGACHPESPPRIRRVAAAYRSQSLAGIAVLVCLFHGP 110 +P+A + HHL + V A RR P+ I A R + + LVCL Sbjct: 526 KPEAKLVGWLVRHHLLMSVTAQRRDIYDPDV---ITEFAKQVRDEE--SLEYLVCLTVAD 580 Query: 109 LAHANPEL 86 + NPEL Sbjct: 581 ICATNPEL 588
>DRS1_GIBZE (Q4I830) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)| Length = 796 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +2 Query: 110 GAMEEADKDRNSCKRLRAVGGGDSADAWRTFRVARAAAGGKDRHSK 247 G + DK R K+LRA GGG+ WR + + A + + +K Sbjct: 722 GKLSNKDKKRLDLKQLRAEGGGE----WRKGKNSEAEMKARHKEAK 763
>CREA_ASPOR (Q9P889) DNA-binding protein creA (Carbon catabolite repressor)| Length = 429 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/27 (51%), Positives = 14/27 (51%) Frame = -3 Query: 239 AGPCHPPRRVPPGKSATHPPSRRRLPL 159 A P H PR P G S H PS R L L Sbjct: 320 ATPAHSPRLRPLGSSELHLPSIRHLSL 346
>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC| 3.4.22.-) (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -2 Query: 228 PPAAARATRKVRHASAESPPPTARSR 151 PP RA R RH+ A PP A +R Sbjct: 726 PPPPRRARRSQRHSDARGTPPPAPAR 751
>DCUP_CAUCR (Q59269) Uroporphyrinogen decarboxylase (EC 4.1.1.37) (URO-D) (UPD)| Length = 351 Score = 27.7 bits (60), Expect = 7.0 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 10/65 (15%) Frame = -1 Query: 376 LDEPLDGLAGLVDAQA-VLDVIE---------LYGRLHREPDAAVAEAARGHHLAVPVLA 227 +D +D LA VDA A L + E L+ RL +P + E R + VP++ Sbjct: 188 VDATIDYLAMQVDAGAQALKLFESWAEGLSEPLFDRLVTQPHIRIIEGLRARGVTVPIIG 247 Query: 226 TRRGA 212 RGA Sbjct: 248 FPRGA 252
>SYR_STRR6 (Q8DN69) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 563 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +2 Query: 239 HSKVVTSRGLRDRRIRLSVQTAIQFYDIQDRLGVDQPSK 355 H++++ RD R+ LS TA+ + LGV+ P K Sbjct: 524 HTRILDESPERDSRLALSYATAVVLKEALRLLGVEAPEK 562
>SYR_STRPN (Q54869) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 563 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +2 Query: 239 HSKVVTSRGLRDRRIRLSVQTAIQFYDIQDRLGVDQPSK 355 H++++ RD R+ LS TA+ + LGV+ P K Sbjct: 524 HTRILDESPERDSRLALSYATAVVLKEALRLLGVEAPEK 562
>CREA_ASPNG (Q05620) DNA-binding protein creA (Carbon catabolite repressor)| Length = 427 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/27 (51%), Positives = 14/27 (51%) Frame = -3 Query: 239 AGPCHPPRRVPPGKSATHPPSRRRLPL 159 A P H PR P G S H PS R L L Sbjct: 317 ATPAHSPRLRPLGSSDLHLPSIRHLSL 343
>CREA_ASPAC (O94166) DNA-binding protein creA (Carbon catabolite repressor)| Length = 431 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/27 (51%), Positives = 14/27 (51%) Frame = -3 Query: 239 AGPCHPPRRVPPGKSATHPPSRRRLPL 159 A P H PR P G S H PS R L L Sbjct: 321 ATPAHSPRLRPLGSSDLHLPSIRHLSL 347
>RK22_SPIOL (P09594) Chloroplast 50S ribosomal protein L22 (Ribosomal protein| CS-L13) Length = 199 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -1 Query: 340 DAQAVLDVIELYGRLHREPDAAVAEAARGHHLAVPVLATRR 218 + +A DV LYG H EP RG+ +++ V RR Sbjct: 8 EKKAEFDVFRLYGLHHPEPGKCDEITTRGYSISMSVDKARR 48
>ELOA2_HUMAN (Q8IYF1) RNA polymerase II transcription factor SIII subunit A2| (Elongin A2) (EloA2) (Transcription elongation factor B polypeptide 3B) Length = 753 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 6/32 (18%) Frame = -3 Query: 233 PCHPP------RRVPPGKSATHPPSRRRLPLA 156 P H P RR PPG+ HP S R P A Sbjct: 122 PSHSPEHRRTARRTPPGQQRPHPRSHSREPRA 153
>YI61_XANCV (P25438) Insertion element IS476 hypothetical 39.2 kDa protein| Length = 346 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/39 (33%), Positives = 16/39 (41%) Frame = +2 Query: 164 VGGGDSADAWRTFRVARAAAGGKDRHSKVVTSRGLRDRR 280 + GG S WR R A GG + + V RG R Sbjct: 9 ISGGPSTGGWRPTRQAAERTGGPEHSIEEVAGRGAPGHR 47
>B3A3_HUMAN (P48751) Anion exchange protein 3 (Neuronal band 3-like protein)| (Solute carrier family 4 member 3) (Cardiac/brain band 3-like protein) (CAE3/BAE3) Length = 1232 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -2 Query: 237 RSLPPAAARATRKVRHASAESPPPT 163 R LPP +AR TR+ R S PP+ Sbjct: 96 RRLPPTSARHTRRKRKKEKTSAPPS 120
>POLN_MANCV (Q69014) Non-structural polyprotein [Contains: p16; p23; Helicase| (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-) (3C-like protease) (3C-pro); RNA-directed RNA polymerase (EC 2.7.7. Length = 2208 Score = 27.3 bits (59), Expect = 9.1 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Frame = +2 Query: 152 RLRAVGGGDSAD-----AWRTFRVARAAAGGKDRHSKVVTSRGLRDRRIRLSVQTA 304 R R+ G D D AW R R A GG H+ ++ G+RD IR S + A Sbjct: 916 RERSALGMDDEDVARYRAWLEIRAMRMA-GGAYTHATIIGRGGVRDEIIRTSPRRA 970
>LSM4_MOUSE (Q9QXA5) U6 snRNA-associated Sm-like protein LSm4| Length = 137 Score = 27.3 bits (59), Expect = 9.1 Identities = 18/44 (40%), Positives = 19/44 (43%) Frame = +1 Query: 103 ELGGHGRGRQGPQFLQATASGRRRRLGGCVADFPGGTRRGGWQG 234 E GRGR GPQ Q G +GG GG RGG G Sbjct: 81 EEAAKGRGRGGPQQKQQKGRG----MGGAGRGVFGGRGRGGIPG 120 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,084,054 Number of Sequences: 219361 Number of extensions: 820616 Number of successful extensions: 3765 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 3426 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3750 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
