ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet96e08 |
|---|---|
| Clone Library Name | barley_pub |
>PYRH_STRP8 (P65940) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 242 Score = 31.6 bits (70), Expect = 1.1 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = +2 Query: 287 VAEALVHYATSN----VTPQQTAAEIGVSLRVLQRRSPCNFLVFGLGHDXPMWAALTTAA 454 +A++L HY P Q AE + R L+ +VFG G P ++ TTAA Sbjct: 87 MADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAA 146 Query: 455 AR 460 R Sbjct: 147 LR 148
>PYRH_STRP6 (Q5XDH4) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 242 Score = 31.6 bits (70), Expect = 1.1 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = +2 Query: 287 VAEALVHYATSN----VTPQQTAAEIGVSLRVLQRRSPCNFLVFGLGHDXPMWAALTTAA 454 +A++L HY P Q AE + R L+ +VFG G P ++ TTAA Sbjct: 87 MADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAA 146 Query: 455 AR 460 R Sbjct: 147 LR 148
>PYRH_STRP3 (P65939) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 242 Score = 31.6 bits (70), Expect = 1.1 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = +2 Query: 287 VAEALVHYATSN----VTPQQTAAEIGVSLRVLQRRSPCNFLVFGLGHDXPMWAALTTAA 454 +A++L HY P Q AE + R L+ +VFG G P ++ TTAA Sbjct: 87 MADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAA 146 Query: 455 AR 460 R Sbjct: 147 LR 148
>PYRH_STRP1 (P65938) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 242 Score = 31.6 bits (70), Expect = 1.1 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = +2 Query: 287 VAEALVHYATSN----VTPQQTAAEIGVSLRVLQRRSPCNFLVFGLGHDXPMWAALTTAA 454 +A++L HY P Q AE + R L+ +VFG G P ++ TTAA Sbjct: 87 MADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAA 146 Query: 455 AR 460 R Sbjct: 147 LR 148
>NTRK2_HUMAN (Q16620) BDNF/NT-3 growth factors receptor precursor (EC 2.7.10.1)| (Neurotrophic tyrosine kinase receptor type 2) (TrkB tyrosine kinase) (GP145-TrkB) (Trk-B) Length = 822 Score = 31.6 bits (70), Expect = 1.1 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -2 Query: 113 SWRRGGGPACGRAWGSTWTLVGSSCLGWRGVY 18 SW R GPA R WG W +VG WR + Sbjct: 3 SWIRWHGPAMARLWGFCWLVVGF----WRAAF 30
>CJ095_HUMAN (Q9H7T3) Protein C10orf95| Length = 257 Score = 31.2 bits (69), Expect = 1.4 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = +1 Query: 25 PRHPRQEEPTSVHVEPHARPQAGPPP 102 PRHPR P + P RP AGP P Sbjct: 111 PRHPRPRRPGGPALRPTPRPCAGPAP 136
>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein| Length = 346 Score = 29.3 bits (64), Expect = 5.2 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = +1 Query: 22 TPRHPRQEEPTSVHVEPHARPQAGPPPRLHEG 117 TP+HP +P S P PQ PP H G Sbjct: 68 TPKHPPHVKPPSTPKHPKHPPQKPCPPPSHHG 99
>Y1477_PYRKO (Q5JJC3) UPF0103 protein TK1477| Length = 291 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = +2 Query: 269 SKLPGAVAEALVHYATSNVTPQQTAAEIGVSLRVLQR 379 S+L GAV L+HY TS + T A +G + V +R Sbjct: 255 SRLAGAVEAELLHYTTSFEVSRSTEAVVGYASIVFRR 291
>SOX14_DROME (P40656) Putative transcription factor SOX-14| Length = 472 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%) Frame = +1 Query: 7 PLRL*TPRHPRQEEPTSVHVEPHARPQ-AGPPPRLHE 114 P+ P+ P+ EP S H H Q PPPR E Sbjct: 97 PVAAAAPKTPKTPEPRSTHTHTHTHSQHFSPPPRESE 133
>NUP88_MOUSE (Q8CEC0) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88| kDa nuclear pore complex protein) Length = 753 Score = 28.9 bits (63), Expect = 6.8 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Frame = +2 Query: 239 GGEGDGDGSCSKLPGAVAEALVHYATSNVTP---QQTAAEIGVSLRVLQRRSPCNFLVFG 409 G GDG+ S LP V + N +P ++ AA S L P LVFG Sbjct: 6 GPLGDGELWQSWLPNHVVFLRLREGVRNQSPAEAEKPAASTSPSCPSLPPHLPTRNLVFG 65 Query: 410 LGHDXPMWAA 439 LG + +W A Sbjct: 66 LGGELFLWDA 75
>Y1638_PYRFU (Q8U0F2) UPF0103 protein PF1638| Length = 292 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +2 Query: 269 SKLPGAVAEALVHYATSNVTPQQTAAEIGVSLRVLQR 379 SKL GA+ L+HY TS + T A +G + V+++ Sbjct: 255 SKLAGAIEAELLHYTTSFEVSRSTDAIVGYASIVMRK 291
>MURG_MYCPA (Q73YQ8) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 408 Score = 28.5 bits (62), Expect = 8.9 Identities = 22/71 (30%), Positives = 32/71 (45%) Frame = +2 Query: 248 GDGDGSCSKLPGAVAEALVHYATSNVTPQQTAAEIGVSLRVLQRRSPCNFLVFGLGHDXP 427 G+G+ + LP A + A +++TP+ A E+ GL D P Sbjct: 323 GNGEQRLNALPVVDAGGGMVVADADLTPELVAREVA-----------------GLVGDPP 365 Query: 428 MWAALTTAAAR 460 AA+TTAAAR Sbjct: 366 RLAAMTTAAAR 376
>NTRK2_CHICK (Q91987) BDNF/NT-3 growth factors receptor precursor (EC 2.7.10.1)| (Neurotrophic tyrosine kinase receptor type 2) (TrkB tyrosine kinase) (Trk-B) Length = 818 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = -2 Query: 113 SWRRGGGPACGRAWGSTWTLVGSSCLGWRG 24 SWRR GP R WG ++G WRG Sbjct: 3 SWRRRPGPGLARLWGLCCLVLGC----WRG 28
>ATPD_TOBAC (P32980) ATP synthase delta chain, chloroplast precursor (EC| 3.6.3.14) Length = 248 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = +2 Query: 239 GGEGDGDGSCSKLPGAVAEALVHYATSNVTPQQTAAEIGVSLRVLQRRSPCNFLV 403 GG G + G+ A AL A SN T +QT A++ ++ + NF V Sbjct: 53 GGGAAGSKMVASAAGSYANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFV 107 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,816,859 Number of Sequences: 219361 Number of extensions: 577560 Number of successful extensions: 2575 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2376 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2564 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
