ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baet96e08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 224 bits (113), Expect = 2e-55 Identities = 176/196 (89%), Gaps = 1/196 (0%) Strand = Plus / Minus Query: 271 gaagctgccgggggccgtggccgaggccctggtgcactacgcgacgtcgaacgtgacgcc 330 |||||| |||| ||| ||||| |||| ||||||||||||||||| ||||||||||||| Sbjct: 5455510 gaagctcccggcggcggtggcgcaggcgatggtgcactacgcgacggcgaacgtgacgcc 5455451 Query: 331 gcagcagacggcggcggagatcggggtgtcgctgcgcgtgctgcagcgccgctcgccgtg 390 |||||||||||||||||||||||||||||||||||| |||||||||| || ||||||| Sbjct: 5455450 gcagcagacggcggcggagatcggggtgtcgctgcgggtgctgcagctgcgggcgccgtg 5455391 Query: 391 caacttcctggtgttcggcctcgggcacgacagncccatgtgggcggcgctc-accacgg 449 ||||||||||||||||||||| || | |||||| ||||||||||||||||| ||||||| Sbjct: 5455390 caacttcctggtgttcggcctgggcctcgacagcgccatgtgggcggcgctcaaccacgg 5455331 Query: 450 cggccgcacggtgttc 465 ||||||||| |||||| Sbjct: 5455330 cggccgcaccgtgttc 5455315 Score = 46.1 bits (23), Expect = 0.10 Identities = 38/43 (88%) Strand = Plus / Plus Query: 274 gctgccgggggccgtggccgaggccctggtgcactacgcgacg 316 ||||||| ||| ||||| ||||| |||||||||||||||||| Sbjct: 5488447 gctgccgtcggcggtggcggaggcgctggtgcactacgcgacg 5488489 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 96 tccacctcgcctccatgaaggccaagct 123 ||||| ||| |||||||||||||||||| Sbjct: 5455679 tccacttcgtctccatgaaggccaagct 5455652
>dbj|AK069867.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038F14, full insert sequence Length = 1521 Score = 224 bits (113), Expect = 2e-55 Identities = 176/196 (89%), Gaps = 1/196 (0%) Strand = Plus / Plus Query: 271 gaagctgccgggggccgtggccgaggccctggtgcactacgcgacgtcgaacgtgacgcc 330 |||||| |||| ||| ||||| |||| ||||||||||||||||| ||||||||||||| Sbjct: 319 gaagctcccggcggcggtggcgcaggcgatggtgcactacgcgacggcgaacgtgacgcc 378 Query: 331 gcagcagacggcggcggagatcggggtgtcgctgcgcgtgctgcagcgccgctcgccgtg 390 |||||||||||||||||||||||||||||||||||| |||||||||| || ||||||| Sbjct: 379 gcagcagacggcggcggagatcggggtgtcgctgcgggtgctgcagctgcgggcgccgtg 438 Query: 391 caacttcctggtgttcggcctcgggcacgacagncccatgtgggcggcgctc-accacgg 449 ||||||||||||||||||||| || | |||||| ||||||||||||||||| ||||||| Sbjct: 439 caacttcctggtgttcggcctgggcctcgacagcgccatgtgggcggcgctcaaccacgg 498 Query: 450 cggccgcacggtgttc 465 ||||||||| |||||| Sbjct: 499 cggccgcaccgtgttc 514 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 96 tccacctcgcctccatgaaggccaagct 123 ||||| ||| |||||||||||||||||| Sbjct: 150 tccacttcgtctccatgaaggccaagct 177
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 224 bits (113), Expect = 2e-55 Identities = 176/196 (89%), Gaps = 1/196 (0%) Strand = Plus / Minus Query: 271 gaagctgccgggggccgtggccgaggccctggtgcactacgcgacgtcgaacgtgacgcc 330 |||||| |||| ||| ||||| |||| ||||||||||||||||| ||||||||||||| Sbjct: 5455499 gaagctcccggcggcggtggcgcaggcgatggtgcactacgcgacggcgaacgtgacgcc 5455440 Query: 331 gcagcagacggcggcggagatcggggtgtcgctgcgcgtgctgcagcgccgctcgccgtg 390 |||||||||||||||||||||||||||||||||||| |||||||||| || ||||||| Sbjct: 5455439 gcagcagacggcggcggagatcggggtgtcgctgcgggtgctgcagctgcgggcgccgtg 5455380 Query: 391 caacttcctggtgttcggcctcgggcacgacagncccatgtgggcggcgctc-accacgg 449 ||||||||||||||||||||| || | |||||| ||||||||||||||||| ||||||| Sbjct: 5455379 caacttcctggtgttcggcctgggcctcgacagcgccatgtgggcggcgctcaaccacgg 5455320 Query: 450 cggccgcacggtgttc 465 ||||||||| |||||| Sbjct: 5455319 cggccgcaccgtgttc 5455304 Score = 46.1 bits (23), Expect = 0.10 Identities = 38/43 (88%) Strand = Plus / Plus Query: 274 gctgccgggggccgtggccgaggccctggtgcactacgcgacg 316 ||||||| ||| ||||| ||||| |||||||||||||||||| Sbjct: 5488436 gctgccgtcggcggtggcggaggcgctggtgcactacgcgacg 5488478 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 96 tccacctcgcctccatgaaggccaagct 123 ||||| ||| |||||||||||||||||| Sbjct: 5455668 tccacttcgtctccatgaaggccaagct 5455641
>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141841 Score = 224 bits (113), Expect = 2e-55 Identities = 176/196 (89%), Gaps = 1/196 (0%) Strand = Plus / Plus Query: 271 gaagctgccgggggccgtggccgaggccctggtgcactacgcgacgtcgaacgtgacgcc 330 |||||| |||| ||| ||||| |||| ||||||||||||||||| ||||||||||||| Sbjct: 10298 gaagctcccggcggcggtggcgcaggcgatggtgcactacgcgacggcgaacgtgacgcc 10357 Query: 331 gcagcagacggcggcggagatcggggtgtcgctgcgcgtgctgcagcgccgctcgccgtg 390 |||||||||||||||||||||||||||||||||||| |||||||||| || ||||||| Sbjct: 10358 gcagcagacggcggcggagatcggggtgtcgctgcgggtgctgcagctgcgggcgccgtg 10417 Query: 391 caacttcctggtgttcggcctcgggcacgacagncccatgtgggcggcgctc-accacgg 449 ||||||||||||||||||||| || | |||||| ||||||||||||||||| ||||||| Sbjct: 10418 caacttcctggtgttcggcctgggcctcgacagcgccatgtgggcggcgctcaaccacgg 10477 Query: 450 cggccgcacggtgttc 465 ||||||||| |||||| Sbjct: 10478 cggccgcaccgtgttc 10493 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 96 tccacctcgcctccatgaaggccaagct 123 ||||| ||| |||||||||||||||||| Sbjct: 10129 tccacttcgtctccatgaaggccaagct 10156
>emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B1280F04 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160556 Score = 224 bits (113), Expect = 2e-55 Identities = 176/196 (89%), Gaps = 1/196 (0%) Strand = Plus / Minus Query: 271 gaagctgccgggggccgtggccgaggccctggtgcactacgcgacgtcgaacgtgacgcc 330 |||||| |||| ||| ||||| |||| ||||||||||||||||| ||||||||||||| Sbjct: 8315 gaagctcccggcggcggtggcgcaggcgatggtgcactacgcgacggcgaacgtgacgcc 8256 Query: 331 gcagcagacggcggcggagatcggggtgtcgctgcgcgtgctgcagcgccgctcgccgtg 390 |||||||||||||||||||||||||||||||||||| |||||||||| || ||||||| Sbjct: 8255 gcagcagacggcggcggagatcggggtgtcgctgcgggtgctgcagctgcgggcgccgtg 8196 Query: 391 caacttcctggtgttcggcctcgggcacgacagncccatgtgggcggcgctc-accacgg 449 ||||||||||||||||||||| || | |||||| ||||||||||||||||| ||||||| Sbjct: 8195 caacttcctggtgttcggcctgggcctcgacagcgccatgtgggcggcgctcaaccacgg 8136 Query: 450 cggccgcacggtgttc 465 ||||||||| |||||| Sbjct: 8135 cggccgcaccgtgttc 8120 Score = 46.1 bits (23), Expect = 0.10 Identities = 38/43 (88%) Strand = Plus / Plus Query: 274 gctgccgggggccgtggccgaggccctggtgcactacgcgacg 316 ||||||| ||| ||||| ||||| |||||||||||||||||| Sbjct: 41252 gctgccgtcggcggtggcggaggcgctggtgcactacgcgacg 41294 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 96 tccacctcgcctccatgaaggccaagct 123 ||||| ||| |||||||||||||||||| Sbjct: 8484 tccacttcgtctccatgaaggccaagct 8457
>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0091I11, complete sequence Length = 135993 Score = 56.0 bits (28), Expect = 1e-04 Identities = 35/36 (97%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 431 tgggcggcgctca-ccacggcggccgcacggtgttc 465 ||||||||||||| |||||||||||||||||||||| Sbjct: 30188 tgggcggcgctcaaccacggcggccgcacggtgttc 30153 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 286 cgtggccgaggccctggtgcactacgcgacgtcgaacgtgacg 328 |||||| ||||| ||||| ||||||||||||||||||| |||| Sbjct: 30348 cgtggcggaggcgctggtccactacgcgacgtcgaacgcgacg 30306
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 56.0 bits (28), Expect = 1e-04 Identities = 35/36 (97%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 431 tgggcggcgctca-ccacggcggccgcacggtgttc 465 ||||||||||||| |||||||||||||||||||||| Sbjct: 7571102 tgggcggcgctcaaccacggcggccgcacggtgttc 7571067 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 286 cgtggccgaggccctggtgcactacgcgacgtcgaacgtgacg 328 |||||| ||||| ||||| ||||||||||||||||||| |||| Sbjct: 7571262 cgtggcggaggcgctggtccactacgcgacgtcgaacgcgacg 7571220 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 239 ggcggcgagggcgatggcgacggg 262 |||||||| ||||||||||||||| Sbjct: 10253274 ggcggcgatggcgatggcgacggg 10253297 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 237 gcggcggcgagggcgatggcgacg 260 |||||||||| ||||||||||||| Sbjct: 7119206 gcggcggcgacggcgatggcgacg 7119183 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcggcgagggcgatggcgacg 260 |||||||||| ||||||||||||| Sbjct: 2660491 gcggcggcgacggcgatggcgacg 2660514
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 56.0 bits (28), Expect = 1e-04 Identities = 35/36 (97%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 431 tgggcggcgctca-ccacggcggccgcacggtgttc 465 ||||||||||||| |||||||||||||||||||||| Sbjct: 7641189 tgggcggcgctcaaccacggcggccgcacggtgttc 7641154 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 286 cgtggccgaggccctggtgcactacgcgacgtcgaacgtgacg 328 |||||| ||||| ||||| ||||||||||||||||||| |||| Sbjct: 7641349 cgtggcggaggcgctggtccactacgcgacgtcgaacgcgacg 7641307 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 239 ggcggcgagggcgatggcgacggg 262 |||||||| ||||||||||||||| Sbjct: 10324971 ggcggcgatggcgatggcgacggg 10324994 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 237 gcggcggcgagggcgatggcgacg 260 |||||||||| ||||||||||||| Sbjct: 7185177 gcggcggcgacggcgatggcgacg 7185154 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcggcgagggcgatggcgacg 260 |||||||||| ||||||||||||| Sbjct: 2669522 gcggcggcgacggcgatggcgacg 2669545
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 384 cgccgtgcaacttcctggtgttcggcctcgg 414 ||||||||||||||||||||||||| ||||| Sbjct: 28296415 cgccgtgcaacttcctggtgttcgggctcgg 28296445
>dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0661G04 Length = 157292 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 384 cgccgtgcaacttcctggtgttcggcctcgg 414 ||||||||||||||||||||||||| ||||| Sbjct: 8993 cgccgtgcaacttcctggtgttcgggctcgg 9023
>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0623A10 Length = 156517 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 384 cgccgtgcaacttcctggtgttcggcctcgg 414 ||||||||||||||||||||||||| ||||| Sbjct: 94444 cgccgtgcaacttcctggtgttcgggctcgg 94474
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 230 cggctgcgcggcggcgagggcgatggcgacg 260 |||| ||||||||||||||||| |||||||| Sbjct: 1708092 cggcagcgcggcggcgagggcggtggcgacg 1708122 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 gcggctgcgcggcggcgagggcga 252 |||||||| ||||||||||||||| Sbjct: 2521650 gcggctgctcggcggcgagggcga 2521673
>emb|BX000346.3|CNS08CDC Oryza sativa chromosome 12, . BAC OSJNBb0084C05 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 117585 Score = 46.1 bits (23), Expect = 0.10 Identities = 38/43 (88%) Strand = Plus / Minus Query: 274 gctgccgggggccgtggccgaggccctggtgcactacgcgacg 316 ||||||| ||| ||||| ||||| |||||||||||||||||| Sbjct: 109730 gctgccgtcggcggtggcggaggcgctggtgcactacgcgacg 109688
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 229 gcggctgcgcggcggcgagggcgatggcga 258 |||||||| ||||||||||||||| ||||| Sbjct: 10617974 gcggctgcccggcggcgagggcgagggcga 10617945 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 239 ggcggcgagggcgatggcgacgggt 263 |||||||| |||||||||||||||| Sbjct: 14552382 ggcggcgatggcgatggcgacgggt 14552406
>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence Length = 187621 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 229 gcggctgcgcggcggcgagggcgatggcga 258 |||||||| ||||||||||||||| ||||| Sbjct: 34888 gcggctgcccggcggcgagggcgagggcga 34859
>emb|AJ719765.1| Gallus gallus mRNA for hypothetical protein, clone 6d21 Length = 4097 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 104 gcctccatgaaggccaagctgc 125 |||||||||||||||||||||| Sbjct: 1366 gcctccatgaaggccaagctgc 1387
>ref|NM_001012776.1| Gallus gallus WD repeat domain 59 (WDR59), mRNA Length = 4097 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 104 gcctccatgaaggccaagctgc 125 |||||||||||||||||||||| Sbjct: 1366 gcctccatgaaggccaagctgc 1387
>emb|CR407113.1| Gallus gallus finished cDNA, clone ChEST753g13 Length = 1121 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 104 gcctccatgaaggccaagctgc 125 |||||||||||||||||||||| Sbjct: 303 gcctccatgaaggccaagctgc 324
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 229 gcggctgcgcggcggcgagggcgatggcga 258 |||||||| ||||||||||||||| ||||| Sbjct: 10616075 gcggctgcccggcggcgagggcgagggcga 10616046 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 239 ggcggcgagggcgatggcgacgggt 263 |||||||| |||||||||||||||| Sbjct: 14547357 ggcggcgatggcgatggcgacgggt 14547381
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 223 cgcctcgcggctgcgcggcggc 244 |||||||||||||||||||||| Sbjct: 2317324 cgcctcgcggctgcgcggcggc 2317345 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 235 gcgcggcggcgagggcgatggcgacggg 262 |||||||||||||||||| |||| |||| Sbjct: 1558921 gcgcggcggcgagggcgagggcggcggg 1558948
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 283 ggccgtggccgaggccctggtg 304 |||||||||||||||||||||| Sbjct: 1091042 ggccgtggccgaggccctggtg 1091063 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 ggggccgtggccgaggccct 300 |||||||||||||||||||| Sbjct: 1029578 ggggccgtggccgaggccct 1029597 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 cgtggccgaggccctggtgc 305 |||||||||||||||||||| Sbjct: 913525 cgtggccgaggccctggtgc 913506
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 283 ggccgtggccgaggccctggtg 304 |||||||||||||||||||||| Sbjct: 764021 ggccgtggccgaggccctggtg 764042 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 ggggccgtggccgaggccct 300 |||||||||||||||||||| Sbjct: 702553 ggggccgtggccgaggccct 702572 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 cgtggccgaggccctggtgc 305 |||||||||||||||||||| Sbjct: 588217 cgtggccgaggccctggtgc 588198
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 438 cgctcaccacggcggccgcac 458 ||||||||||||||||||||| Sbjct: 1369704 cgctcaccacggcggccgcac 1369684
>gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genomic sequence, complete sequence Length = 147130 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 239 ggcggcgagggcgatggcgacgggt 263 |||||||| |||||||||||||||| Sbjct: 105329 ggcggcgatggcgatggcgacgggt 105305
>emb|AL606648.3|OSJN00093 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093O08, complete sequence Length = 148860 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 237 gcggcggcgagggcgatggcgacgggtcg 265 |||||||||| ||||||||||||| |||| Sbjct: 147160 gcggcggcgatggcgatggcgacgagtcg 147188
>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23, complete sequence Length = 164805 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 237 gcggcggcgagggcgatggcgacgggtcg 265 |||||||||| ||||||||||||| |||| Sbjct: 28035 gcggcggcgatggcgatggcgacgagtcg 28063
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 237 gcggcggcgagggcgatggcgacgggtcg 265 |||||||||| ||||||||||||| |||| Sbjct: 31450352 gcggcggcgatggcgatggcgacgagtcg 31450380
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 236 cgcggcggcgagggcgatggcgacg 260 |||||||||| |||||||||||||| Sbjct: 23595070 cgcggcggcgcgggcgatggcgacg 23595094
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 237 gcggcggcgagggcgatggcgacgg 261 |||||||||| |||||||||||||| Sbjct: 2974772 gcggcggcgatggcgatggcgacgg 2974748 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 283 ggccgtggccgaggccctggtgcactac 310 |||||| ||||||||||| ||||||||| Sbjct: 13502813 ggccgtcgccgaggccctcgtgcactac 13502840
>dbj|AP004643.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1113_A10 Length = 160089 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 236 cgcggcggcgagggcgatggcgacg 260 |||||||||| |||||||||||||| Sbjct: 2666 cgcggcggcgcgggcgatggcgacg 2690
>dbj|AP005409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0024L18 Length = 150128 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 237 gcggcggcgagggcgatggcgacgg 261 |||||||||| |||||||||||||| Sbjct: 20827 gcggcggcgatggcgatggcgacgg 20803
>dbj|AP003917.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1666_A04 Length = 90097 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 236 cgcggcggcgagggcgatggcgacg 260 |||||||||| |||||||||||||| Sbjct: 74845 cgcggcggcgcgggcgatggcgacg 74869
>dbj|AK111389.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-C03, full insert sequence Length = 634 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 237 gcggcggcgagggcgatggcgacgg 261 |||||||||| |||||||||||||| Sbjct: 79 gcggcggcgatggcgatggcgacgg 103
>dbj|AK106689.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-C05, full insert sequence Length = 1796 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 237 gcggcggcgagggcgatggcgacgggtcg 265 |||||||||| ||||||||||||| |||| Sbjct: 50 gcggcggcgatggcgatggcgacgagtcg 78
>emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0313F03, complete sequence Length = 131195 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 237 gcggcggcgagggcgatggcgacgggtcg 265 |||||||||| ||||||||||||| |||| Sbjct: 70187 gcggcggcgatggcgatggcgacgagtcg 70215
>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940117D9, complete sequence Length = 143368 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 325 gacgccgcagcagacggcggcggagatc 352 ||||||||||||| ||||||||| |||| Sbjct: 110317 gacgccgcagcaggcggcggcggcgatc 110344
>ref|XM_477723.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1410 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 283 ggccgtggccgaggccctggtgcactac 310 |||||| ||||||||||| ||||||||| Sbjct: 210 ggccgtcgccgaggccctcgtgcactac 237
>gb|AC135562.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0087P19, complete sequence Length = 172066 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 239 ggcggcgagggcgatggcgacggg 262 |||||||| ||||||||||||||| Sbjct: 149438 ggcggcgatggcgatggcgacggg 149461
>gb|AC134048.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0076K20, complete sequence Length = 127338 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 237 gcggcggcgagggcgatggcgacg 260 |||||||||| ||||||||||||| Sbjct: 66307 gcggcggcgacggcgatggcgacg 66284
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0097K08 map C827S, complete sequence Length = 137870 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcggcgagggcgatggcgacg 260 |||||||||| ||||||||||||| Sbjct: 63349 gcggcggcgacggcgatggcgacg 63372
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0026P08 map near C827S, complete sequence Length = 148676 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 237 gcggcggcgagggcgatggcgacg 260 |||||||||| ||||||||||||| Sbjct: 32426 gcggcggcgacggcgatggcgacg 32403
>ref|XM_369559.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG05905.4) partial mRNA Length = 1800 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 cggcggcgagggcgatggcg 257 |||||||||||||||||||| Sbjct: 901 cggcggcgagggcgatggcg 882
>gb|AC125028.8| Mus musculus chromosome 16, clone RP24-85G10, complete sequence Length = 269788 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 cccatgtgggcggcgctcac 444 |||||||||||||||||||| Sbjct: 189204 cccatgtgggcggcgctcac 189223
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 gcagcgccgctcgccgtgca 392 |||||||||||||||||||| Sbjct: 1279955 gcagcgccgctcgccgtgca 1279936
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12 Length = 349672 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 gcggctgcgcggcggcgagg 248 |||||||||||||||||||| Sbjct: 42324 gcggctgcgcggcggcgagg 42305
>emb|AJ233397.3|PPU233397 Pseudomonas putida P1 alkane degradation genes (alkBFGHJKL and alkST) and flanking DNA Length = 23312 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 344 gcggagatcggggtgtcgctgcgc 367 |||||||||||| ||||||||||| Sbjct: 21434 gcggagatcgggctgtcgctgcgc 21457 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 344 gcggagatcggggtgtcgctgcgc 367 |||||||||||| ||||||||||| Sbjct: 1536 gcggagatcgggctgtcgctgcgc 1559
>gb|AC151608.2| Emiliania huxleyi clone JGIACCU-13E1, complete sequence Length = 30907 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 cgcggctgcgcggcggcgagggcg 251 |||||| ||||||||||||||||| Sbjct: 25156 cgcggccgcgcggcggcgagggcg 25133
>gb|AC010010.6| Drosophila melanogaster 3L BAC RP98-13F6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167977 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 gctgcgcgtgctgcagcgcc 380 |||||||||||||||||||| Sbjct: 140772 gctgcgcgtgctgcagcgcc 140753
>gb|AY027524.1| Frankia sp. CpI1 plasmid pFQ12, complete plasmid sequence Length = 22437 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 433 ggcggcgctcaccacggcggccgc 456 |||||||| ||||||||||||||| Sbjct: 14152 ggcggcgcgcaccacggcggccgc 14129
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 ggccgtggccgaggccctgg 302 |||||||||||||||||||| Sbjct: 1686254 ggccgtggccgaggccctgg 1686235
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 ctgcgcggcggcgagggcga 252 |||||||||||||||||||| Sbjct: 1477531 ctgcgcggcggcgagggcga 1477512
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 326 acgccgcagcagacggcggcggagatcg 353 |||||||||| | ||||||||||||||| Sbjct: 4924095 acgccgcagcggccggcggcggagatcg 4924068
>emb|BX930922.2| Gallus gallus finished cDNA, clone ChEST969d1 Length = 761 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 gcgcggcggcgagggcgatg 254 |||||||||||||||||||| Sbjct: 137 gcgcggcggcgagggcgatg 156
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 ggcgatggcgacgggtcgtg 267 |||||||||||||||||||| Sbjct: 22497727 ggcgatggcgacgggtcgtg 22497746 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 237 gcggcggcgagggcgatggcgacg 260 |||||||||||||||| ||||||| Sbjct: 19743322 gcggcggcgagggcgagggcgacg 19743299
>gb|AE004580.1| Pseudomonas aeruginosa PAO1, section 141 of 529 of the complete genome Length = 15247 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcggcgagggcgatggcgacg 260 ||||||| |||||||||||||||| Sbjct: 13389 gcggcggtgagggcgatggcgacg 13412
>dbj|AP005800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0016D04 Length = 147313 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 ggcgatggcgacgggtcgtg 267 |||||||||||||||||||| Sbjct: 68083 ggcgatggcgacgggtcgtg 68102
>dbj|AP004156.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_G07 Length = 149119 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 237 gcggcggcgagggcgatggcgacg 260 |||||||||||||||| ||||||| Sbjct: 51873 gcggcggcgagggcgagggcgacg 51850
>dbj|AP005831.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1123E10 Length = 134641 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 283 ggccgtggccgaggccctggtgcactac 310 |||||| ||||||||||| ||||||||| Sbjct: 82496 ggccgtcgccgaggccctcgtgcactac 82523
>dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1136H02 Length = 145086 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 237 gcggcggcgagggcgatggcgacg 260 |||||||||||||||| ||||||| Sbjct: 100080 gcggcggcgagggcgagggcgacg 100057
>emb|AJ438318.1|TAE438318 Triticum aestivum partial mRNA for glucosyltransferase (GbssI gene), clone ugt2i2c Length = 313 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 cggcggcggagatcggggtg 358 |||||||||||||||||||| Sbjct: 218 cggcggcggagatcggggtg 199
>dbj|AK109082.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-H05, full insert sequence Length = 770 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ggcgatggcgacgggtcgtg 267 |||||||||||||||||||| Sbjct: 226 ggcgatggcgacgggtcgtg 207
>gb|U62317.2|HUB384D8 Homo sapiens chromosome 22q13 BAC clone CIT987SK-384D8 complete sequence Length = 139934 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 gggcggcgctcaccacggcg 451 |||||||||||||||||||| Sbjct: 114466 gggcggcgctcaccacggcg 114447
>dbj|AK100802.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121K14, full insert sequence Length = 2509 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcggcgagggcgatggcgacg 260 |||||||||| ||||||||||||| Sbjct: 750 gcggcggcgacggcgatggcgacg 773
>gb|AE003468.3| Drosophila melanogaster chromosome 3L, section 2 of 83 of the complete sequence Length = 307657 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 gctgcgcgtgctgcagcgcc 380 |||||||||||||||||||| Sbjct: 58368 gctgcgcgtgctgcagcgcc 58349
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 tcgcggctgcgcggcggcga 246 |||||||||||||||||||| Sbjct: 360068 tcgcggctgcgcggcggcga 360087
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 acgtgacgccgcagcagacg 340 |||||||||||||||||||| Sbjct: 4233545 acgtgacgccgcagcagacg 4233526
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 cagacggcggcggagatcgg 354 |||||||||||||||||||| Sbjct: 1295033 cagacggcggcggagatcgg 1295052
>dbj|AP006144.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT23P21, TM0261, complete sequence Length = 121882 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 cgcctccatgaaggccaagc 122 |||||||||||||||||||| Sbjct: 31659 cgcctccatgaaggccaagc 31678 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 cgcctccatgaaggccaagc 122 |||||||||||||||||||| Sbjct: 22263 cgcctccatgaaggccaagc 22282
>gb|M58602.1|HUMPDGFAA Human platelet-derived endothelial cell growth factor gene, exons 1 through 10 Length = 5845 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 gggcggcgctcaccacggcg 451 |||||||||||||||||||| Sbjct: 5467 gggcggcgctcaccacggcg 5448 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,171,646 Number of Sequences: 3902068 Number of extensions: 2171646 Number of successful extensions: 61166 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58107 Number of HSP's gapped (non-prelim): 3054 length of query: 465 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 443 effective length of database: 17,147,199,772 effective search space: 7596209498996 effective search space used: 7596209498996 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
