ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet96d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY104589.1| Zea mays PCO067801 mRNA sequence 381 e-102
2gb|BT016325.1| Zea mays clone Contig158 mRNA sequence 365 8e-98
3dbj|AK070043.1| Oryza sativa (japonica cultivar-group) cDNA clon... 355 8e-95
4dbj|AK104366.1| Oryza sativa (japonica cultivar-group) cDNA clon... 347 2e-92
5dbj|AK104199.1| Oryza sativa (japonica cultivar-group) cDNA clon... 347 2e-92
6gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome... 331 1e-87
7gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome... 331 1e-87
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 331 1e-87
9gb|AY105221.1| Zea mays PCO086679 mRNA sequence 50 0.006
10ref|XM_653645.1| Aspergillus nidulans FGSC A4 hypothetical prote... 44 0.37
11dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.37
12gb|AC092193.4| Bos taurus clone RP42-459A17, complete sequence 42 1.5
13ref|XM_470337.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
14gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.5
15gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genom... 42 1.5
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
17gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence 40 5.8
18gb|AC120885.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
19gb|BC059558.1| Danio rerio chaperonin containing TCP1, subunit 2... 40 5.8
20ref|XM_756273.1| Ustilago maydis 521 hypothetical protein (UM052... 40 5.8
21emb|CR728712.2|CNS0GP7Y Tetraodon nigroviridis full-length cDNA 40 5.8
22emb|CR724120.2|CNS0GLOE Tetraodon nigroviridis full-length cDNA 40 5.8
23emb|CR722961.2|CNS0GKS7 Tetraodon nigroviridis full-length cDNA 40 5.8
24emb|CR702614.2|CNS0G536 Tetraodon nigroviridis full-length cDNA 40 5.8
25emb|CR683137.2|CNS0FQ25 Tetraodon nigroviridis full-length cDNA 40 5.8
26emb|AL161628.9| Human DNA sequence from clone RP11-31K16 on chro... 40 5.8
27emb|AL445623.2|HS315I14 Homo sapiens chromosome 9 BAC RP11-315I1... 40 5.8
28gb|AF506226.1| Danio rerio chaperonin-containing TCP-1 complex b... 40 5.8
29gb|BC050953.1| Danio rerio, clone IMAGE:5776777, mRNA 40 5.8
30dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
31ref|NM_201455.1| Danio rerio chaperonin containing TCP1, subunit... 40 5.8
32emb|AJ337232.1|HSA337232 Homo sapiens genomic sequence surroundi... 40 5.8
33gb|U33117.1|TAU33117 Thermus aquaticus MutS gene, complete cds 40 5.8
34gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
35gb|AC099701.4| Mus musculus chromosome 7, clone RP23-184F6, comp... 40 5.8
36emb|AL672174.8| Mouse DNA sequence from clone RP23-408K4 on chro... 40 5.8

>gb|AY104589.1| Zea mays PCO067801 mRNA sequence
          Length = 1197

 Score =  381 bits (192), Expect = e-102
 Identities = 323/364 (88%), Gaps = 2/364 (0%)
 Strand = Plus / Plus

                                                                       
Query: 47  gagagcgagatggcgtcggcgacggagatgcagccactggcaccgtcgggctacagccgg 106
           ||||| |||||||| |||| | ||||||||||||| || || ||| |||| ||| |||| 
Sbjct: 126 gagagagagatggcatcggtggcggagatgcagcccctcgcgccggcggggtaccgccgc 185

                                                                       
Query: 107 gcgccggagatgaaggagaaggtggaggcctcgtcgatcgacctggaggcggggaacggg 166
           ||||||||||||||||||||||||||||| |||  | | ||||||||||| |||| ||||
Sbjct: 186 gcgccggagatgaaggagaaggtggaggcgtcggtggtggacctggaggccgggaccggg 245

                                                                       
Query: 167 gagacgctctacccggggatctcgcgcggggagaacgccctccgctggggcttcatccgc 226
           |||||||| ||||||||||||||||||||||||| ||||||||| ||||||||| |||||
Sbjct: 246 gagacgctgtacccggggatctcgcgcggggagagcgccctccgatggggcttcgtccgc 305

                                                                       
Query: 227 aaggtctacggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaacc 286
           ||||||||||||||||||   |||||||||||||||||||||| |||||||||| | |||
Sbjct: 306 aaggtctacggcatcctcgctgcgcagctgctcctcaccaccgccgtctccgccctcacc 365

                                                                       
Query: 287 gtcttccaccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctc 346
           ||  ||||||||||||||||||||||||||||| |||| || | ||| ||||||||||||
Sbjct: 366 gttctccaccccaccctcaacgccacgctctccgactccccgggcctcgcgctcgtgctc 425

                                                                       
Query: 347 gctgtcctccccttcatcctgatgatcccattgta-catctatcagcacaggcacccgca 405
           || ||||| |||||||||||||||||||||||||| ||| |||||||||| |||||| ||
Sbjct: 426 gccgtcctgcccttcatcctgatgatcccattgtatcat-tatcagcacaagcacccaca 484

               
Query: 406 caat 409
           ||||
Sbjct: 485 caat 488



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>gb|BT016325.1| Zea mays clone Contig158 mRNA sequence
          Length = 1172

 Score =  365 bits (184), Expect = 8e-98
 Identities = 321/364 (88%), Gaps = 2/364 (0%)
 Strand = Plus / Plus

                                                                       
Query: 47  gagagcgagatggcgtcggcgacggagatgcagccactggcaccgtcgggctacagccgg 106
           ||||| |||||||| |||| | ||||||||||||| || || || ||||| ||| |||| 
Sbjct: 80  gagagagagatggcatcggtggcggagatgcagcccctcgcgccctcggggtaccgccgc 139

                                                                       
Query: 107 gcgccggagatgaaggagaaggtggaggcctcgtcgatcgacctggaggcggggaacggg 166
           ||||||||||||||||||||||||||||| |||  | | ||||||||||| || | ||||
Sbjct: 140 gcgccggagatgaaggagaaggtggaggcgtcggtggtggacctggaggccggcaccggg 199

                                                                       
Query: 167 gagacgctctacccggggatctcgcgcggggagaacgccctccgctggggcttcatccgc 226
           |||||||| ||||||||||||||||||||||||| ||||||||| ||||||||| |||||
Sbjct: 200 gagacgctgtacccggggatctcgcgcggggagagcgccctccgatggggcttcgtccgc 259

                                                                       
Query: 227 aaggtctacggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaacc 286
           ||||||||||||| ||||   |||||||||||||||||||||| |||||||||| | |||
Sbjct: 260 aaggtctacggcaccctcgctgcgcagctgctcctcaccaccgccgtctccgccctcacc 319

                                                                       
Query: 287 gtcttccaccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctc 346
           ||  ||||||||||||||||||||||||||||| |||| || | ||| ||||||||||||
Sbjct: 320 gttctccaccccaccctcaacgccacgctctccgactccccgggcctcgcgctcgtgctc 379

                                                                       
Query: 347 gctgtcctccccttcatcctgatgatcccattgta-catctatcagcacaggcacccgca 405
           || ||||| |||||||||||||||||||||||||| ||| |||||||||| |||||| ||
Sbjct: 380 gccgtcctgcccttcatcctgatgatcccattgtatcat-tatcagcacaagcacccaca 438

               
Query: 406 caat 409
           ||||
Sbjct: 439 caat 442



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>dbj|AK070043.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039E14, full
           insert sequence
          Length = 1106

 Score =  355 bits (179), Expect = 8e-95
 Identities = 290/327 (88%)
 Strand = Plus / Plus

                                                                       
Query: 55  gatggcgtcggcgacggagatgcagccactggcaccgtcgggctacagccgggcgccgga 114
           ||||||||||||| ||||||||||||| ||||| ||| |||||||| |||||||||||||
Sbjct: 81  gatggcgtcggcggcggagatgcagccgctggccccggcgggctaccgccgggcgccgga 140

                                                                       
Query: 115 gatgaaggagaaggtggaggcctcgtcgatcgacctggaggcggggaacggggagacgct 174
           |||||||||||||||||| |||||  || | ||||||||||| || | ||||||||||||
Sbjct: 141 gatgaaggagaaggtggacgcctccgcggtggacctggaggccggcaccggggagacgct 200

                                                                       
Query: 175 ctacccggggatctcgcgcggggagaacgccctccgctggggcttcatccgcaaggtcta 234
            ||||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||| ||
Sbjct: 201 gtacccggggatctcgcgcggggagagcgccctccggtgggggttcgtccgcaaggtgta 260

                                                                       
Query: 235 cggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaaccgtcttcca 294
           ||||||||||  ||||||||||||||||||||||| |||||||||  | |||||| ||||
Sbjct: 261 cggcatcctcgccgcgcagctgctcctcaccaccgccgtctccgcgctcaccgtcctcca 320

                                                                       
Query: 295 ccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctcgctgtcct 354
           |||||||||||||||||||||||||  ||| ||   ||| || ||||||||||| |||||
Sbjct: 321 ccccaccctcaacgccacgctctcctcctccccgaccctcgccctcgtgctcgccgtcct 380

                                      
Query: 355 ccccttcatcctgatgatcccattgta 381
           ||||||| |||||||| ||||||||||
Sbjct: 381 ccccttcgtcctgatggtcccattgta 407



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>dbj|AK104366.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-D07, full
           insert sequence
          Length = 1060

 Score =  347 bits (175), Expect = 2e-92
 Identities = 289/327 (88%)
 Strand = Plus / Plus

                                                                       
Query: 55  gatggcgtcggcgacggagatgcagccactggcaccgtcgggctacagccgggcgccgga 114
           ||||||||||||| ||||||||||||| ||||| ||| |||||||| |||||||||||||
Sbjct: 80  gatggcgtcggcggcggagatgcagccgctggccccggcgggctaccgccgggcgccgga 139

                                                                       
Query: 115 gatgaaggagaaggtggaggcctcgtcgatcgacctggaggcggggaacggggagacgct 174
           |||||||||||||||||  |||||  || | ||||||||||| || | ||||||||||||
Sbjct: 140 gatgaaggagaaggtgggcgcctccgcggtggacctggaggccggcaccggggagacgct 199

                                                                       
Query: 175 ctacccggggatctcgcgcggggagaacgccctccgctggggcttcatccgcaaggtcta 234
            ||||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||| ||
Sbjct: 200 gtacccggggatctcgcgcggggagagcgccctccggtgggggttcgtccgcaaggtgta 259

                                                                       
Query: 235 cggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaaccgtcttcca 294
           ||||||||||  ||||||||||||||||||||||| |||||||||  | |||||| ||||
Sbjct: 260 cggcatcctcgccgcgcagctgctcctcaccaccgccgtctccgcgctcaccgtcctcca 319

                                                                       
Query: 295 ccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctcgctgtcct 354
           |||||||||||||||||||||||||  ||| ||   ||| || ||||||||||| |||||
Sbjct: 320 ccccaccctcaacgccacgctctcctcctccccgaccctcgccctcgtgctcgccgtcct 379

                                      
Query: 355 ccccttcatcctgatgatcccattgta 381
           ||||||| |||||||| ||||||||||
Sbjct: 380 ccccttcgtcctgatggtcccattgta 406



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>dbj|AK104199.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-A08, full
           insert sequence
          Length = 1060

 Score =  347 bits (175), Expect = 2e-92
 Identities = 289/327 (88%)
 Strand = Plus / Plus

                                                                       
Query: 55  gatggcgtcggcgacggagatgcagccactggcaccgtcgggctacagccgggcgccgga 114
           ||||||||||||| ||||||||||||| ||||| ||| |||||||| |||||||||||||
Sbjct: 80  gatggcgtcggcggcggagatgcagccgctggccccggcgggctaccgccgggcgccgga 139

                                                                       
Query: 115 gatgaaggagaaggtggaggcctcgtcgatcgacctggaggcggggaacggggagacgct 174
           |||||||||||||||||  |||||  || | ||||||||||| || | ||||||||||||
Sbjct: 140 gatgaaggagaaggtgggcgcctccgcggtggacctggaggccggcaccggggagacgct 199

                                                                       
Query: 175 ctacccggggatctcgcgcggggagaacgccctccgctggggcttcatccgcaaggtcta 234
            ||||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||| ||
Sbjct: 200 gtacccggggatctcgcgcggggagagcgccctccggtgggggttcgtccgcaaggtgta 259

                                                                       
Query: 235 cggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaaccgtcttcca 294
           ||||||||||  ||||||||||||||||||||||| |||||||||  | |||||| ||||
Sbjct: 260 cggcatcctcgccgcgcagctgctcctcaccaccgccgtctccgcgctcaccgtcctcca 319

                                                                       
Query: 295 ccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctcgctgtcct 354
           |||||||||||||||||||||||||  ||| ||   ||| || ||||||||||| |||||
Sbjct: 320 ccccaccctcaacgccacgctctcctcctccccgaccctcgccctcgtgctcgccgtcct 379

                                      
Query: 355 ccccttcatcctgatgatcccattgta 381
           ||||||| |||||||| ||||||||||
Sbjct: 380 ccccttcgtcctgatggtcccattgta 406



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>gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0035J16,
              complete sequence
          Length = 170233

 Score =  331 bits (167), Expect = 1e-87
 Identities = 272/307 (88%)
 Strand = Plus / Minus

                                                                          
Query: 55     gatggcgtcggcgacggagatgcagccactggcaccgtcgggctacagccgggcgccgga 114
              ||||||||||||| ||||||||||||| ||||| ||| |||||||| |||||||||||||
Sbjct: 149745 gatggcgtcggcggcggagatgcagccgctggccccggcgggctaccgccgggcgccgga 149686

                                                                          
Query: 115    gatgaaggagaaggtggaggcctcgtcgatcgacctggaggcggggaacggggagacgct 174
              |||||||||||||||||| |||||  || | ||||||||||| || | ||||||||||||
Sbjct: 149685 gatgaaggagaaggtggacgcctccgcggtggacctggaggccggcaccggggagacgct 149626

                                                                          
Query: 175    ctacccggggatctcgcgcggggagaacgccctccgctggggcttcatccgcaaggtcta 234
               ||||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||| ||
Sbjct: 149625 gtacccggggatctcgcgcggggagagcgccctccggtgggggttcgtccgcaaggtgta 149566

                                                                          
Query: 235    cggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaaccgtcttcca 294
              ||||||||||  ||||||||||||||||||||||| |||||||||  | |||||| ||||
Sbjct: 149565 cggcatcctcgccgcgcagctgctcctcaccaccgccgtctccgcgctcaccgtcctcca 149506

                                                                          
Query: 295    ccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctcgctgtcct 354
              |||||||||||||||||||||||||  ||| ||   ||| || ||||||||||| |||||
Sbjct: 149505 ccccaccctcaacgccacgctctcctcctccccgaccctcgccctcgtgctcgccgtcct 149446

                     
Query: 355    ccccttc 361
              |||||||
Sbjct: 149445 ccccttc 149439



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>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0006J12, complete sequence
          Length = 157069

 Score =  331 bits (167), Expect = 1e-87
 Identities = 272/307 (88%)
 Strand = Plus / Minus

                                                                         
Query: 55    gatggcgtcggcgacggagatgcagccactggcaccgtcgggctacagccgggcgccgga 114
             ||||||||||||| ||||||||||||| ||||| ||| |||||||| |||||||||||||
Sbjct: 47108 gatggcgtcggcggcggagatgcagccgctggccccggcgggctaccgccgggcgccgga 47049

                                                                         
Query: 115   gatgaaggagaaggtggaggcctcgtcgatcgacctggaggcggggaacggggagacgct 174
             |||||||||||||||||| |||||  || | ||||||||||| || | ||||||||||||
Sbjct: 47048 gatgaaggagaaggtggacgcctccgcggtggacctggaggccggcaccggggagacgct 46989

                                                                         
Query: 175   ctacccggggatctcgcgcggggagaacgccctccgctggggcttcatccgcaaggtcta 234
              ||||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||| ||
Sbjct: 46988 gtacccggggatctcgcgcggggagagcgccctccggtgggggttcgtccgcaaggtgta 46929

                                                                         
Query: 235   cggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaaccgtcttcca 294
             ||||||||||  ||||||||||||||||||||||| |||||||||  | |||||| ||||
Sbjct: 46928 cggcatcctcgccgcgcagctgctcctcaccaccgccgtctccgcgctcaccgtcctcca 46869

                                                                         
Query: 295   ccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctcgctgtcct 354
             |||||||||||||||||||||||||  ||| ||   ||| || ||||||||||| |||||
Sbjct: 46868 ccccaccctcaacgccacgctctcctcctccccgaccctcgccctcgtgctcgccgtcct 46809

                    
Query: 355   ccccttc 361
             |||||||
Sbjct: 46808 ccccttc 46802



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  331 bits (167), Expect = 1e-87
 Identities = 272/307 (88%)
 Strand = Plus / Minus

                                                                            
Query: 55       gatggcgtcggcgacggagatgcagccactggcaccgtcgggctacagccgggcgccgga 114
                ||||||||||||| ||||||||||||| ||||| ||| |||||||| |||||||||||||
Sbjct: 19446396 gatggcgtcggcggcggagatgcagccgctggccccggcgggctaccgccgggcgccgga 19446337

                                                                            
Query: 115      gatgaaggagaaggtggaggcctcgtcgatcgacctggaggcggggaacggggagacgct 174
                |||||||||||||||||| |||||  || | ||||||||||| || | ||||||||||||
Sbjct: 19446336 gatgaaggagaaggtggacgcctccgcggtggacctggaggccggcaccggggagacgct 19446277

                                                                            
Query: 175      ctacccggggatctcgcgcggggagaacgccctccgctggggcttcatccgcaaggtcta 234
                 ||||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||| ||
Sbjct: 19446276 gtacccggggatctcgcgcggggagagcgccctccggtgggggttcgtccgcaaggtgta 19446217

                                                                            
Query: 235      cggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaaccgtcttcca 294
                ||||||||||  ||||||||||||||||||||||| |||||||||  | |||||| ||||
Sbjct: 19446216 cggcatcctcgccgcgcagctgctcctcaccaccgccgtctccgcgctcaccgtcctcca 19446157

                                                                            
Query: 295      ccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctcgctgtcct 354
                |||||||||||||||||||||||||  ||| ||   ||| || ||||||||||| |||||
Sbjct: 19446156 ccccaccctcaacgccacgctctcctcctccccgaccctcgccctcgtgctcgccgtcct 19446097

                       
Query: 355      ccccttc 361
                |||||||
Sbjct: 19446096 ccccttc 19446090



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>gb|AY105221.1| Zea mays PCO086679 mRNA sequence
          Length = 1138

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                       
Query: 219 tcatccgcaaggtctacggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccg 278
           ||||||||||| |||||| ||| |||| |   ||||||||||||||| |||||||| |||
Sbjct: 307 tcatccgcaagatctacgtcattctctccctccagctgctcctcaccgccgtcgtcgccg 366

            
Query: 279 c 279
           |
Sbjct: 367 c 367



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>ref|XM_653645.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1133.2), mRNA
          Length = 813

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 218 ttcatccgcaaggtctacggcatcctctgcgcgcagctgctcctcaccaccgtc 271
           ||||||||||||||||| |  ||||||  ||  ||||||||||| |||||||||
Sbjct: 193 ttcatccgcaaggtctatgcgatcctcaccgtccagctgctcctaaccaccgtc 246



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 260     ctcaccaccgtcgtctccgccg 281
               ||||||||||||||||||||||
Sbjct: 1878944 ctcaccaccgtcgtctccgccg 1878965



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>gb|AC092193.4| Bos taurus clone RP42-459A17, complete sequence
          Length = 258544

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 117    tgaaggagaaggtggaggcct 137
              |||||||||||||||||||||
Sbjct: 200699 tgaaggagaaggtggaggcct 200719



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>ref|XM_470337.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1614

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 109 gccggagatgaaggagaaggt 129
           |||||||||||||||||||||
Sbjct: 153 gccggagatgaaggagaaggt 133



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 109      gccggagatgaaggagaaggt 129
                |||||||||||||||||||||
Sbjct: 34827916 gccggagatgaaggagaaggt 34827896



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>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete
             sequence
          Length = 164352

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 109   gccggagatgaaggagaaggt 129
             |||||||||||||||||||||
Sbjct: 34734 gccggagatgaaggagaaggt 34754



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 109      gccggagatgaaggagaaggt 129
                |||||||||||||||||||||
Sbjct: 34917988 gccggagatgaaggagaaggt 34917968



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>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence
          Length = 211664

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 285  ccgtcttccaccccaccctcaacgccac 312
            ||||||||||||||||| ||| ||||||
Sbjct: 2307 ccgtcttccaccccaccatcaccgccac 2334



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>gb|AC120885.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0042J05, complete sequence
          Length = 150295

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    gaaatccccaattccccaca 30
             ||||||||||||||||||||
Sbjct: 97739 gaaatccccaattccccaca 97758



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>gb|BC059558.1| Danio rerio chaperonin containing TCP1, subunit 2 (beta), mRNA
           (cDNA clone MGC:73212 IMAGE:4790853), complete cds
          Length = 1784

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 114 agatgaaggagaaggtggag 133
           ||||||||||||||||||||
Sbjct: 846 agatgaaggagaaggtggag 865



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>ref|XM_756273.1| Ustilago maydis 521 hypothetical protein (UM05219.1) partial mRNA
          Length = 1830

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   gagcgagatggcgtcggcga 68
            ||||||||||||||||||||
Sbjct: 1432 gagcgagatggcgtcggcga 1451



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>emb|CR728712.2|CNS0GP7Y Tetraodon nigroviridis full-length cDNA
          Length = 1133

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 114 agatgaaggagaaggtggag 133
           ||||||||||||||||||||
Sbjct: 73  agatgaaggagaaggtggag 92



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>emb|CR724120.2|CNS0GLOE Tetraodon nigroviridis full-length cDNA
          Length = 1127

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 114 agatgaaggagaaggtggag 133
           ||||||||||||||||||||
Sbjct: 74  agatgaaggagaaggtggag 93



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>emb|CR722961.2|CNS0GKS7 Tetraodon nigroviridis full-length cDNA
          Length = 1275

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 114 agatgaaggagaaggtggag 133
           ||||||||||||||||||||
Sbjct: 223 agatgaaggagaaggtggag 242



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>emb|CR702614.2|CNS0G536 Tetraodon nigroviridis full-length cDNA
          Length = 1873

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 114 agatgaaggagaaggtggag 133
           ||||||||||||||||||||
Sbjct: 830 agatgaaggagaaggtggag 849



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>emb|CR683137.2|CNS0FQ25 Tetraodon nigroviridis full-length cDNA
          Length = 1341

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 114 agatgaaggagaaggtggag 133
           ||||||||||||||||||||
Sbjct: 297 agatgaaggagaaggtggag 316



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>emb|AL161628.9| Human DNA sequence from clone RP11-31K16 on chromosome 9 Contains a
             pseudogene similar to part of nucleolar protein 5A (56kDa
             with KKE/D repeat) (NOL5A) (NOP56), the ELAVL2 gene for
             ELAV (embryonic lethal, abnormal vision, Drosophila)-like
             2 (Hu antigen B) (HUB, HELN1), two novel genes, the 5' end
             of a novel gene and a CpG island, complete sequence
          Length = 183483

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 365   ctgatgatcccattgtacat 384
             ||||||||||||||||||||
Sbjct: 33491 ctgatgatcccattgtacat 33510



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>emb|AL445623.2|HS315I14 Homo sapiens chromosome 9 BAC RP11-315I14, complete sequence
          Length = 198637

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 365    ctgatgatcccattgtacat 384
              ||||||||||||||||||||
Sbjct: 159083 ctgatgatcccattgtacat 159102



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>gb|AF506226.1| Danio rerio chaperonin-containing TCP-1 complex beta chain (cct2)
           mRNA, partial cds
          Length = 1554

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 114 agatgaaggagaaggtggag 133
           ||||||||||||||||||||
Sbjct: 852 agatgaaggagaaggtggag 871



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>gb|BC050953.1| Danio rerio, clone IMAGE:5776777, mRNA
          Length = 1835

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 114 agatgaaggagaaggtggag 133
           ||||||||||||||||||||
Sbjct: 897 agatgaaggagaaggtggag 916



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 11       gaaatccccaattccccaca 30
                ||||||||||||||||||||
Sbjct: 23081736 gaaatccccaattccccaca 23081755



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>ref|NM_201455.1| Danio rerio chaperonin containing TCP1, subunit 2 (beta) (cct2),
           mRNA
          Length = 1784

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 114 agatgaaggagaaggtggag 133
           ||||||||||||||||||||
Sbjct: 846 agatgaaggagaaggtggag 865



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>emb|AJ337232.1|HSA337232 Homo sapiens genomic sequence surrounding NotI site, clone
           NR5-FN12RS
          Length = 816

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 202 cgccctccgctggggcttca 221
           ||||||||||||||||||||
Sbjct: 155 cgccctccgctggggcttca 136



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>gb|U33117.1|TAU33117 Thermus aquaticus MutS gene, complete cds
          Length = 3396

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 109  gccggagatgaaggagaagg 128
            ||||||||||||||||||||
Sbjct: 1943 gccggagatgaaggagaagg 1962



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 11       gaaatccccaattccccaca 30
                ||||||||||||||||||||
Sbjct: 23391646 gaaatccccaattccccaca 23391665



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>gb|AC099701.4| Mus musculus chromosome 7, clone RP23-184F6, complete sequence
          Length = 226167

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    gatgaaggagaaggtggagg 134
              ||||||||||||||||||||
Sbjct: 124282 gatgaaggagaaggtggagg 124263



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>emb|AL672174.8| Mouse DNA sequence from clone RP23-408K4 on chromosome X, complete
              sequence
          Length = 201642

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 128    gtggaggcctcgtcgatcgacctggaggcggg 159
              ||||||||||||| | ||| ||||||||||||
Sbjct: 187821 gtggaggcctcgtgggtcgtcctggaggcggg 187790


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,893,216
Number of Sequences: 3902068
Number of extensions: 2893216
Number of successful extensions: 65493
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 65128
Number of HSP's gapped (non-prelim): 359
length of query: 431
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 409
effective length of database: 17,147,199,772
effective search space: 7013204706748
effective search space used: 7013204706748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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